RchiOBHm_Chr2g0150951

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004600
Physical Location & Seq
Reverse (-)
68634984 .. 68636216
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52019

Sequence Viewer

Length: 489 bp
ATGGGTGTTCTTGCAGCGATTGCCAAGAATTTGGATACACTAATCGGGCCCGGAGTGACACTTCTTTATCCTTTATATGCAACAGTGAGAGCAATAGAGAGCGCTTCTACACTAGACGATCAGCAGTGGCTTACATATTGGGTGTTATATTCTTTGATCACATTATTCGAGCTCTTCTGTTGGAAAGTCCTCGCTTGGATTCCAATATGGCCATATATGAAGCTATTGTTCTGCATCTGGCTGGTGTTGCCAATATTCAACGGGGCAGCCTATGTTTATGAGAATATTGTGAGAAAATATGTGAAGCCCGGGGACTATATCAATTGGAGCTCATCGTCATCATCAAAACACCCAGAGGGACAGAAGAAGGTTATCCAAATGTTGAGCCTCGATGGAAGGAAGTCGGTAGAGCATTTTATCGATCACCATGGATCAGAGGCTTTCGAGAGGGTCGTCAAAACGGCTGAAAGAGAAGCTAGGAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

162

Amino Acids

18.67

Weight (kDa)

8.48

Isoelectric Point (pI)

24.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 24 - 100 2.1e-27 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 1 cut(s) 28
AfeI AGCGCT 1 cut(s) 103
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 4 cut(s) 172, 223, 330, 476
AluI AGCT 4 cut(s) 172, 223, 330, 476
Alw21I GWGCWC 2 cut(s) 174, 332
AlwI GGATC 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 308
Aor51HI AGCGCT 1 cut(s) 103
AoxI GGCC 2 cut(s) 47, 209
ApaI GGGCCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 14, 266
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 47, 48
AsuC2I CCSGG 3 cut(s) 51, 309, 310
AsuHPI GGTGA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 51
BalI TGGCCA 1 cut(s) 211
BanII GRGCYC 3 cut(s) 51, 174, 332
Bbv12I GWGCWC 2 cut(s) 174, 332
BbvI GCAGC 2 cut(s) 26, 278
BccI CCATC 1 cut(s) 386
BceAI ACGGC 1 cut(s) 477
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 1 cut(s) 156
BcnI CCSGG 3 cut(s) 51, 309, 310
BfaI CTAG 2 cut(s) 113, 477
BfoI RGCGCY 1 cut(s) 105
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 2 cut(s) 15, 267
BlsI GCNGC 2 cut(s) 16, 268
Bme1390I CCNGG 3 cut(s) 51, 309, 310
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 47, 48
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 3 cut(s) 51, 309, 310
BmsI GCATC 1 cut(s) 243
BpuMI CCSGG 3 cut(s) 51, 309, 310
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 308, 309, 427
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 308, 309, 427
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 2 cut(s) 26, 278
BshFI GGCC 2 cut(s) 49, 211
BshVI ATCGAT 1 cut(s) 420
BsiHKAI GWGCWC 2 cut(s) 174, 332
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 2 cut(s) 51, 309
BslFI GGGAC 2 cut(s) 326, 372
BsmFI GGGAC 2 cut(s) 326, 372
BsnI GGCC 2 cut(s) 49, 211
BsoBI CYCGRG 1 cut(s) 308
Bsp120I GGGCCC 1 cut(s) 47
Bsp1286I GDGCHC 3 cut(s) 51, 174, 332
Bsp143I GATC 4 cut(s) 118, 156, 421, 431
Bsp19I CCATGG 1 cut(s) 427
BspANI GGCC 2 cut(s) 49, 211
BspDI ATCGAT 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 1 cut(s) 439
BspQI GCTCTTC 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 308, 309, 427
BssMI GATC 4 cut(s) 118, 156, 421, 431
BssT1I CCWWGG 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 427
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 4 cut(s) 121, 159, 424, 434
BstMBI GATC 4 cut(s) 118, 156, 421, 431
BstMWI GCNNNNNNNGC 2 cut(s) 20, 247
BstSCI CCNGG 3 cut(s) 49, 307, 308
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 26, 278
BstXI CCANNNNNNTGG 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 420
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 49, 211
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 427
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 3 cut(s) 90, 131, 484
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 47, 48
Cfr9I CCCGGG 1 cut(s) 308
ClaI ATCGAT 1 cut(s) 420
CviAII CATG 1 cut(s) 428
DpnI GATC 4 cut(s) 120, 158, 423, 433
DpnII GATC 4 cut(s) 118, 156, 421, 431
EaeI YGGCCR 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 2 cut(s) 172, 330
Eco130I CCWWGG 1 cut(s) 427
Eco24I GRGCYC 3 cut(s) 51, 174, 332
Eco47III AGCGCT 1 cut(s) 103
Eco53kI GAGCTC 2 cut(s) 172, 330
Eco88I CYCGRG 1 cut(s) 308
EcoICRI GAGCTC 2 cut(s) 172, 330
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 3 cut(s) 51, 174, 332
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 1 cut(s) 431
FaqI GGGAC 2 cut(s) 326, 372
FatI CATG 1 cut(s) 427
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 15, 267
FriOI GRGCYC 3 cut(s) 51, 174, 332
Fsp4HI GCNGC 2 cut(s) 15, 267
FspBI CTAG 2 cut(s) 113, 477
GlaI GCGC 1 cut(s) 103
GluI GCNGC 2 cut(s) 15, 267
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 2 cut(s) 49, 211
HapII CCGG 2 cut(s) 51, 309
HhaI GCGC 1 cut(s) 104
Hin1II CATG 1 cut(s) 431
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 1 cut(s) 199
HpaII CCGG 2 cut(s) 51, 309
HphI GGTGA 1 cut(s) 416
Hpy188I TCNGA 1 cut(s) 436
Hpy188III TCNNGA 1 cut(s) 445
HpyAV CCTTC 2 cut(s) 361, 390
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 3 cut(s) 14, 80, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 247
Hsp92II CATG 1 cut(s) 431
HspAI GCGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 4 cut(s) 118, 156, 421, 431
LguI GCTCTTC 1 cut(s) 179
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 5 cut(s) 64, 223, 227, 322, 366
Lsp1109I GCAGC 2 cut(s) 26, 278
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 113, 477
MaeIII GTNAC 1 cut(s) 55
MalI GATC 4 cut(s) 120, 158, 423, 433
MboI GATC 4 cut(s) 118, 156, 421, 431
MboII GAAGA 2 cut(s) 166, 376
MfeI CAATTG 1 cut(s) 322
MhlI GDGCHC 3 cut(s) 51, 174, 332
MlsI TGGCCA 1 cut(s) 211
MluCI AATT 2 cut(s) 28, 322
MluNI TGGCCA 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 5 cut(s) 200, 349, 398, 430, 441
Mox20I TGGCCA 1 cut(s) 211
MscI TGGCCA 1 cut(s) 211
Msp20I TGGCCA 1 cut(s) 211
MspI CCGG 2 cut(s) 51, 309
MspR9I CCNGG 3 cut(s) 51, 309, 310
MunI CAATTG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 20, 247
NciI CCSGG 3 cut(s) 51, 309, 310
NcoI CCATGG 1 cut(s) 427
NdeII GATC 4 cut(s) 118, 156, 421, 431
NlaIII CATG 1 cut(s) 431
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 16, 268
Psp124BI GAGCTC 2 cut(s) 174, 332
PspN4I GGNNCC 1 cut(s) 49
PspOMI GGGCCC 1 cut(s) 47
PspPI GGNCC 2 cut(s) 47, 48
SacI GAGCTC 2 cut(s) 174, 332
SapI GCTCTTC 1 cut(s) 179
SatI GCNGC 2 cut(s) 15, 267
Sau3AI GATC 4 cut(s) 118, 156, 421, 431
Sau96I GGNCC 2 cut(s) 47, 48
ScrFI CCNGG 3 cut(s) 51, 309, 310
SduI GDGCHC 3 cut(s) 51, 174, 332
SetI ASST 5 cut(s) 174, 225, 332, 372, 478
SfaNI GCATC 1 cut(s) 243
SmaI CCCGGG 1 cut(s) 310
Sse9I AATT 2 cut(s) 28, 322
SspI AATATT 2 cut(s) 255, 286
SspMI CTAG 2 cut(s) 113, 477
SstI GAGCTC 2 cut(s) 174, 332
StyD4I CCNGG 3 cut(s) 49, 307, 308
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 4 cut(s) 168, 390, 420, 444
TasI AATT 2 cut(s) 28, 322
TfiI GAWTC 1 cut(s) 199
TscAI CASTG 2 cut(s) 90, 131
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 14, 266
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 233
TspMI CCCGGG 1 cut(s) 308
TspRI CASTG 2 cut(s) 90, 131
XapI RAATTY 1 cut(s) 28
XmaI CCCGGG 1 cut(s) 308
XspI CTAG 2 cut(s) 113, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.