MD17G1141500.v1.1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0004600
Physical Location & Seq
Forward (+)
12720196 .. 12721688
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1141500.v1.1.491

Sequence Viewer

Length: 471 bp
ATGGGTGTTCTTGGAGCCATTGCTAAAAATTTGGATACAATAATCGGGCCAGGAGTGATGCTTCTTTATCCATTGTATGCATCAATGAGAGCAATCGAGAGCCCCTCAGCACTCGACGAACAGCAGTGGCTACCGTATTGGGTTATATACTCTTTCATAACCTTATTCGAACTATCCTTCTGGAAAGTACTAGCTTGGATTCCAATATGGCCCTATATGAAGCTGTTATTTTGCATGTGGTTGGTGCTGCCAATTTTCAATGGGGCAGCCTATGTTTATGAGAACGTTGTGAGGAAGTATGTGAAGCTTGGAGACCATTTGAGCTCAAACTATCCAGCGAATCAGAAGAAGGTCCTGCAAATGATGAGCCTCGACGCAAGGAAGTATGTCGAACGCTACATCGATCAATATGGAGTTGAAGCTTTAGAAAGAGTCGTCAAAGCAGCTGAAAGAGAAGCTAGGAGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

157

Amino Acids

18.24

Weight (kDa)

8.89

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 24 - 100 2.8e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 285
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 2 cut(s) 259, 419
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 7 cut(s) 194, 223, 307, 324, 422, 446, 458
AluI AGCT 7 cut(s) 194, 223, 307, 324, 422, 446, 458
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 2 cut(s) 47, 209
ApeKI GCWGC 3 cut(s) 247, 266, 443
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 3 cut(s) 47, 210, 352
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 1 cut(s) 352
BanII GRGCYC 2 cut(s) 104, 326
Bbv12I GWGCWC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 106
BbvI GCAGC 3 cut(s) 234, 278, 455
BciT130I CCWGG 1 cut(s) 51
BciVI GTATCC 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 2 cut(s) 191, 459
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 3 cut(s) 248, 267, 444
BlsI GCNGC 3 cut(s) 249, 268, 445
BmcAI AGTACT 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 3 cut(s) 47, 210, 352
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 2 cut(s) 48, 89
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu10I CCTNAGC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 402
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 234, 278, 455
BshFI GGCC 2 cut(s) 49, 211
BshVI ATCGAT 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 2 cut(s) 49, 211
Bso31I GGTCTC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 104, 326
Bsp143I GATC 1 cut(s) 403
BspANI GGCC 2 cut(s) 49, 211
BspCNI CTCAG 1 cut(s) 119
BspDI ATCGAT 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 16
BspT104I TTCGAA 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 18
BssMI GATC 1 cut(s) 403
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 106
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 403
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 49
BstV1I GCAGC 3 cut(s) 234, 278, 455
Bsu15I ATCGAT 1 cut(s) 402
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 49, 211
BsuTUI ATCGAT 1 cut(s) 402
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 131
Cfr13I GGNCC 3 cut(s) 47, 210, 352
ClaI ATCGAT 1 cut(s) 402
CseI GACGC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 188
CviAII CATG 1 cut(s) 235
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 106
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 324
Eco24I GRGCYC 2 cut(s) 104, 326
Eco31I GGTCTC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 82
EcoT38I GRGCYC 2 cut(s) 104, 326
FaeI CATG 1 cut(s) 238
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 248, 267, 444
FriOI GRGCYC 2 cut(s) 104, 326
Fsp4HI GCNGC 3 cut(s) 248, 267, 444
FspBI CTAG 2 cut(s) 191, 459
GluI GCNGC 3 cut(s) 248, 267, 444
HaeIII GGCC 2 cut(s) 49, 211
HgaI GACGC 1 cut(s) 383
Hin1II CATG 1 cut(s) 238
HindIII AAGCTT 2 cut(s) 305, 420
HinfI GANTC 3 cut(s) 199, 340, 432
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 97, 181
Hpy99I CGWCG 2 cut(s) 119, 377
HpyAV CCTTC 2 cut(s) 187, 343
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 80, 234, 358
HpyF3I CTNAG 1 cut(s) 106
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 5 cut(s) 36, 63, 166, 348, 368
Lsp1109I GCAGC 3 cut(s) 234, 278, 455
LweI GCATC 2 cut(s) 48, 89
MaeI CTAG 2 cut(s) 191, 459
MaeII ACGT 1 cut(s) 285
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 1 cut(s) 358
MhlI GDGCHC 2 cut(s) 104, 326
MluCI AATT 2 cut(s) 28, 252
MlyI GAGTC 1 cut(s) 441
MnlI CCTC 4 cut(s) 115, 285, 380, 456
Mph1103I ATGCAT 1 cut(s) 82
MspA1I CMGCKG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
NdeII GATC 1 cut(s) 403
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 82
NspI RCATGY 1 cut(s) 238
NspV TTCGAA 1 cut(s) 168
PfeI GAWTC 2 cut(s) 199, 340
PkrI GCNGC 3 cut(s) 249, 268, 445
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PpuMI RGGWCCY 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 326
Psp1406I AACGTT 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 3 cut(s) 47, 210, 352
PspPPI RGGWCCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SacI GAGCTC 1 cut(s) 326
SatI GCNGC 3 cut(s) 248, 267, 444
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 3 cut(s) 47, 210, 352
ScaI AGTACT 1 cut(s) 189
SchI GAGTC 1 cut(s) 441
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 2 cut(s) 104, 326
SfaNI GCATC 2 cut(s) 48, 89
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 1 cut(s) 352
Sse9I AATT 2 cut(s) 28, 252
SspMI CTAG 2 cut(s) 191, 459
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 1 cut(s) 288
TaqI TCGA 6 cut(s) 96, 114, 168, 372, 390, 402
TasI AATT 2 cut(s) 28, 252
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 2 cut(s) 199, 340
TscAI CASTG 1 cut(s) 131
TseI GCWGC 3 cut(s) 247, 266, 443
TspDTI ATGAA 2 cut(s) 145, 233
TspRI CASTG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 238
XspI CTAG 2 cut(s) 191, 459
ZrmI AGTACT 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.