Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004600

Physical Location & Seq

Genomic Coordinates Forward (+)

5620182 .. 5621829

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07440.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTGTTCTTGGAGCCATTGCTAAAAATTTGGATACAATAATCGGGCCAGGCCTTATGCTTCTTTATCCATTGTATGCATCAATGAGAGCAATCGAGAGCCCTTCAGCACTCGACGATCAGCAGTGGCTAACATATTGGGTTATATACTCTTTCATAACCTTATTCGAACTATCCTGCTGGAAAGTCCTAGCTTGGATTCCAATATGGCCGTATACGAAGCTGTTATTTTGCATTTGGTTGGTGTTGCCAATTTTCAATGGGGCAGCCTATATTTATGAGAACGTTGTGAGGAAGTATGTGAAGCTTGGAATGGATGCGACGAGCTCAAACTATACAGCGGGTCAGAAGAAGGTCCTGCAAATGATGAGCCTCGACGCAAGGAAGTCCGTCGAACGCTTCATCAATCAACATGGAGATGATGCTTTCGAAAGAGTCGTCAAAGCGGCTGAAAAAGAAGCTAGGAGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

158

Amino Acids

18.06

Weight (kDa)

8.81

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42820
fragaria_vesca	FvH4_6g37830 FvH4_6g37840
malus_domestica	MD09G1155500.v1.1 MD17G1141500.v1.1
prunus_persica	Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1
pyrus_communis	pycom09g07440 pycom17g13490
rosa_chinensis	RchiOBHm_Chr2g0150951 RchiOBHm_Chr2g0150981
rosa_laevigata	RLG00000020519 RLG00000020520
rosa_multiflora	Rmu_sc0000185.1_g000031 Rmu_sc0000185.1_g000032
rosa_roxburghii	Rroxscaffold_2G00096800 Rroxscaffold_2G00096820
rosa_rugosa	Rorug02G0423400 Rorug02G0423400
rosa_samantha	Rh2AG484100 Rh2AG484200 Rh2BG496300 Rh2BG496400 Rh2CG470200 Rh2CG470300 Rh2DG507200
rosa_wichuraiana	Rw2G039670 Rw2G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	215
AciI	CCGC	2 cut(s)	341, 446
AclI	AACGTT	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	194, 223, 307, 327, 461
AluI	AGCT	5 cut(s)	194, 223, 307, 327, 461
Alw21I	GWGCWC	1 cut(s)	329
AoxI	GGCC	3 cut(s)	47, 52, 209
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	28
ArsI	GACNNNNNNTTYG	2 cut(s)	423, 455
AspS9I	GGNCC	2 cut(s)	47, 355
AsuII	TTCGAA	2 cut(s)	168, 429
AvaII	GGWCC	1 cut(s)	355
BanII	GRGCYC	2 cut(s)	104, 329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	191, 462
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	2 cut(s)	267, 447
BlsI	GCNGC	2 cut(s)	268, 448
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	47, 355
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	3 cut(s)	89, 307, 412
Bpu14I	TTCGAA	2 cut(s)	168, 429
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	3 cut(s)	49, 54, 211
BsiHKAI	GWGCWC	1 cut(s)	329
BsnI	GGCC	3 cut(s)	49, 54, 211
Bsp119I	TTCGAA	2 cut(s)	168, 429
Bsp1286I	GDGCHC	2 cut(s)	104, 329
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	2 cut(s)	341, 446
BspANI	GGCC	3 cut(s)	49, 54, 211
BspLI	GGNNCC	1 cut(s)	16
BspT104I	TTCGAA	2 cut(s)	168, 429
BsrDI	GCAATG	1 cut(s)	18
BssMI	GATC	1 cut(s)	118
BssNAI	GTATAC	1 cut(s)	216
Bst1107I	GTATAC	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	51
BstBI	TTCGAA	2 cut(s)	168, 429
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	278
BstZ17I	GTATAC	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	49, 54, 211
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	47, 355
CseI	GACGC	1 cut(s)	386
CviAII	CATG	1 cut(s)	413
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	54
Eco24I	GRGCYC	2 cut(s)	104, 329
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	2 cut(s)	104, 329
FaeI	CATG	1 cut(s)	416
FatI	CATG	1 cut(s)	412
FauI	CCCGC	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	267, 447
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	2 cut(s)	104, 329
Fsp4HI	GCNGC	2 cut(s)	267, 447
FspBI	CTAG	2 cut(s)	191, 462
GluI	GCNGC	2 cut(s)	267, 447
HaeIII	GGCC	3 cut(s)	49, 54, 211
HgaI	GACGC	1 cut(s)	386
Hin1II	CATG	1 cut(s)	416
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	199, 435
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	4 cut(s)	119, 325, 380, 395
HpyAV	CCTTC	2 cut(s)	114, 346
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	80, 234, 361
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	416
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	5 cut(s)	36, 63, 166, 190, 371
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	3 cut(s)	89, 307, 412
MaeI	CTAG	2 cut(s)	191, 462
MaeII	ACGT	1 cut(s)	285
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	361
MhlI	GDGCHC	2 cut(s)	104, 329
MluCI	AATT	2 cut(s)	28, 252
MlyI	GAGTC	1 cut(s)	444
MnlI	CCTC	2 cut(s)	285, 383
Mph1103I	ATGCAT	1 cut(s)	82
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	82
NspV	TTCGAA	2 cut(s)	168, 429
PceI	AGGCCT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	268, 448
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PpuMI	RGGWCCY	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	329
Psp1406I	AACGTT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	2 cut(s)	47, 355
PspPPI	RGGWCCY	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	329
SatI	GCNGC	2 cut(s)	267, 447
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	2 cut(s)	47, 355
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	104, 329
SetI	ASST	8 cut(s)	164, 196, 225, 288, 309, 329, 357, 463
SfaNI	GCATC	3 cut(s)	89, 307, 412
SfuI	TTCGAA	2 cut(s)	168, 429
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	417
Sse9I	AATT	2 cut(s)	28, 252
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	2 cut(s)	341, 446
SspMI	CTAG	2 cut(s)	191, 462
SstI	GAGCTC	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	49
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	6 cut(s)	96, 114, 168, 375, 393, 429
TasI	AATT	2 cut(s)	28, 252
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	131
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	145, 391
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	2 cut(s)	191, 462
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.