RLG00000020520

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004600
Physical Location & Seq
Reverse (-)
65908561 .. 65909629
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020520

Sequence Viewer

Length: 366 bp
ATGGGTGTTCTTGCAACGATTGCTAAGAATTTGGATACATTGATCGGGCCAGGAGTTACACTTCTTTATCCTTTGATTCCAATATGGCCATATTTGAAGCTGTTTTTTTGCCTGTGGTTGGTGTTGCCAAAATTCAATGGAGCTGCCTACATCTACGAAAATATTGTGAGAAAATATGTGAAGCCCGGTGACTATATCAATTTTATCAGCTCATCATCATCAAAGCGCCCAGAGGGACAGAATAAGGTCCTCCAAATGATGAGCCTGGATGCAAGGAAATCAGTAGAGCGTTTTATCGATCAATACGGACCCGAGGCTTTTGAAAGAGTCGTCAAAGCAGCTGAAAGAGAAGCGAGAAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

9.52

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 22 - 59 4.6e-11 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 2 cut(s) 28, 131
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 3 cut(s) 97, 136, 323
AjnI CCWGG 2 cut(s) 49, 264
AluBI AGCT 4 cut(s) 100, 143, 210, 341
AluI AGCT 4 cut(s) 100, 143, 210, 341
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 2 cut(s) 47, 86
ApeKI GCWGC 2 cut(s) 143, 338
ApoI RAATTY 2 cut(s) 28, 131
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 3 cut(s) 47, 247, 308
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 2 cut(s) 247, 308
BalI TGGCCA 1 cut(s) 88
BbvI GCAGC 2 cut(s) 130, 350
BciT130I CCWGG 2 cut(s) 51, 266
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 229
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 2 cut(s) 144, 339
BlsI GCNGC 2 cut(s) 145, 340
Bme1390I CCNGG 3 cut(s) 51, 186, 266
Bme18I GGWCC 2 cut(s) 247, 308
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 47, 247, 308
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 3 cut(s) 51, 186, 266
BmsI GCATC 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 118
BseBI CCWGG 2 cut(s) 51, 266
BseCI ATCGAT 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 118
BseXI GCAGC 2 cut(s) 130, 350
BshFI GGCC 2 cut(s) 49, 88
BshVI ATCGAT 1 cut(s) 297
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 249
BsnI GGCC 2 cut(s) 49, 88
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 2 cut(s) 42, 298
BspANI GGCC 2 cut(s) 49, 88
BspDI ATCGAT 1 cut(s) 297
BspLI GGNNCC 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 42, 298
Bst2UI CCWGG 2 cut(s) 51, 266
BstAPI GCANNNNNTGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 45, 301
BstMBI GATC 2 cut(s) 42, 298
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 2 cut(s) 51, 266
BstSCI CCNGG 3 cut(s) 49, 184, 264
BstV1I GCAGC 2 cut(s) 130, 350
Bsu15I ATCGAT 1 cut(s) 297
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 49, 88
BsuTUI ATCGAT 1 cut(s) 297
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 361
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 47, 247, 308
ClaI ATCGAT 1 cut(s) 297
CviJI RGCY 9 cut(s) 49, 88, 100, 143, 184, 210, 264, 317, 341
CviKI_1 RGCY 9 cut(s) 49, 88, 100, 143, 184, 210, 264, 317, 341
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 44, 300
DpnII GATC 2 cut(s) 42, 298
EaeI YGGCCR 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 247, 308
Eco88I CYCGRG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 49, 264
FaiI YATR 4 cut(s) 85, 91, 177, 195
FaqI GGGAC 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 144, 339
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 2 cut(s) 144, 339
GlaI GCGC 1 cut(s) 227
GluI GCNGC 2 cut(s) 144, 339
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 49, 88
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 228
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 2 cut(s) 76, 327
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 14, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 24
HspAI GCGC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 42, 298
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 7 cut(s) 36, 63, 125, 199, 243, 251, 278
Lsp1109I GCAGC 2 cut(s) 130, 350
LweI GCATC 1 cut(s) 259
MaeIII GTNAC 2 cut(s) 55, 188
MalI GATC 2 cut(s) 44, 300
MboI GATC 2 cut(s) 42, 298
MlsI TGGCCA 1 cut(s) 88
MluCI AATT 3 cut(s) 28, 131, 199
MluNI TGGCCA 1 cut(s) 88
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 3 cut(s) 226, 260, 307
Mox20I TGGCCA 1 cut(s) 88
MscI TGGCCA 1 cut(s) 88
Msp20I TGGCCA 1 cut(s) 88
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 3 cut(s) 51, 186, 266
MvaI CCWGG 2 cut(s) 51, 266
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 42, 298
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 188
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 2 cut(s) 145, 340
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 49, 264
PspGI CCWGG 2 cut(s) 49, 264
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 3 cut(s) 47, 247, 308
PspPPI RGGWCCY 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 341
SatI GCNGC 2 cut(s) 144, 339
Sau3AI GATC 2 cut(s) 42, 298
Sau96I GGNCC 3 cut(s) 47, 247, 308
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 3 cut(s) 51, 186, 266
SetI ASST 5 cut(s) 102, 145, 212, 249, 343
SfaNI GCATC 1 cut(s) 259
SinI GGWCC 2 cut(s) 247, 308
Sse9I AATT 3 cut(s) 28, 131, 199
SspI AATATT 1 cut(s) 163
StyD4I CCNGG 3 cut(s) 49, 184, 264
TaqI TCGA 1 cut(s) 297
TasI AATT 3 cut(s) 28, 131, 199
TfiI GAWTC 1 cut(s) 76
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 143, 338
Tsp45I GTSAC 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 247, 308
XapI RAATTY 2 cut(s) 28, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.