Rh2AG484200

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004600
Physical Location & Seq
Reverse (-)
70491226 .. 70492924
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG484200.1

Sequence Viewer

Length: 435 bp
ATGGATGAACATATATACAGATATGCAACAATGAGAGCAATAGAGAACCCTTCTGCACTAGACGATCAGCAGTGGCTTACATATTGGGTTTTATATTCTTTGATCACATTATTCGAGCTATTCTGTTGGAAAGTCCTTGCTTGGATTCCAATATGGCCATATTTGAAGCTGTTTTTTTGCATGTGGTTGGTGTTGCCAAAATTCAATGGAGCTGCCTACATCTACGAAAATATTGTGAGAAAATATGTGAAGCCCAGTGACTATATCAATTTTATCAGCTCATCATCATCAAAGCGCCCAGAGGGACAGAATAAGGTCCTCCAAATGATGAGCCTGGATGCAAGGAAATCAGTCGAGCGTTTTATCGATCAATACGGACCCGAGGCTTTCGAAAGAGTCGTCAAAGCAGCTGAAAGAGAAGCGAGGAAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

144

Amino Acids

17.26

Weight (kDa)

8.81

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 8 - 82 7.6e-27 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 1 cut(s) 200
AgsI TTSAA 2 cut(s) 166, 205
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 5 cut(s) 118, 169, 212, 279, 410
AluI AGCT 5 cut(s) 118, 169, 212, 279, 410
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 212, 407
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 384, 416
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 2 cut(s) 316, 377
AsuII TTCGAA 1 cut(s) 390
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 2 cut(s) 316, 377
BalI TGGCCA 1 cut(s) 157
BbvI GCAGC 2 cut(s) 199, 419
BciT130I CCWGG 1 cut(s) 335
BclI TGATCA 1 cut(s) 102
BfaI CTAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 298
BisI GCNGC 2 cut(s) 213, 408
BlsI GCNGC 2 cut(s) 214, 409
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 2 cut(s) 316, 377
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 316, 377
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 1 cut(s) 335
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 249
Bpu14I TTCGAA 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 335
BseCI ATCGAT 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 10, 343
BseNI ACTGG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 199, 419
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 157
BshVI ATCGAT 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 390
Bsp143I GATC 3 cut(s) 64, 102, 367
BspANI GGCC 1 cut(s) 157
BspDI ATCGAT 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 379
BspT104I TTCGAA 1 cut(s) 390
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 3 cut(s) 64, 102, 367
Bst2UI CCWGG 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 390
BstF5I GGATG 2 cut(s) 10, 343
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 3 cut(s) 67, 105, 370
BstMBI GATC 3 cut(s) 64, 102, 367
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 199, 419
Bsu15I ATCGAT 1 cut(s) 366
BsuRI GGCC 1 cut(s) 157
BsuTUI ATCGAT 1 cut(s) 366
BtsCI GGATG 2 cut(s) 10, 343
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 3 cut(s) 77, 262, 430
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 316, 377
ClaI ATCGAT 1 cut(s) 366
CviAII CATG 1 cut(s) 181
DpnI GATC 3 cut(s) 66, 104, 369
DpnII GATC 3 cut(s) 64, 102, 367
EaeI YGGCCR 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 316, 377
Eco88I CYCGRG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 184
FaqI GGGAC 1 cut(s) 318
FatI CATG 1 cut(s) 180
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 213, 408
FokI GGATG 2 cut(s) 17, 350
Fsp4HI GCNGC 2 cut(s) 213, 408
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 296
GluI GCNGC 2 cut(s) 213, 408
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 157
HhaI GCGC 1 cut(s) 297
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HinfI GANTC 2 cut(s) 145, 396
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 26, 56, 180, 341
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 3 cut(s) 64, 102, 367
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 268, 312, 320, 347
Lsp1109I GCAGC 2 cut(s) 199, 419
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 257
MalI GATC 3 cut(s) 66, 104, 369
MboI GATC 3 cut(s) 64, 102, 367
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 2 cut(s) 200, 268
MluNI TGGCCA 1 cut(s) 157
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 4 cut(s) 295, 329, 376, 417
Mox20I TGGCCA 1 cut(s) 157
MscI TGGCCA 1 cut(s) 157
Msp20I TGGCCA 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
NdeII GATC 3 cut(s) 64, 102, 367
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 214, 409
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PpuMI RGGWCCY 1 cut(s) 316
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 316, 377
PspPPI RGGWCCY 1 cut(s) 316
PvuII CAGCTG 1 cut(s) 410
SatI GCNGC 2 cut(s) 213, 408
Sau3AI GATC 3 cut(s) 64, 102, 367
Sau96I GGNCC 2 cut(s) 316, 377
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 335
SetI ASST 6 cut(s) 120, 171, 214, 281, 318, 412
SfaNI GCATC 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 390
SinI GGWCC 2 cut(s) 316, 377
Sse9I AATT 2 cut(s) 200, 268
SspI AATATT 1 cut(s) 232
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 333
TaqI TCGA 4 cut(s) 114, 354, 366, 390
TasI AATT 2 cut(s) 200, 268
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 2 cut(s) 77, 262
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 212, 407
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 21
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 2 cut(s) 77, 262
VpaK11BI GGWCC 2 cut(s) 316, 377
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 184
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.