Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004600

Physical Location & Seq

Genomic Coordinates Reverse (-)

63464246 .. 63466695

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG470300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGTGTTCTTGCAACGATTGCTAAGAATTTGGATACATTGATCGGGCCAGGAGTCACACTTCTTTATCCTCTATATGCAACAATGAGAGCAATAGAGAACCCTTCTGCACTAGACGATCAGCAGTGGCTTACATATTGGGTTTTATATTCTTTGATCACATTATTCGAGCTATTCTGTTGGAAAGTCCTTGCTTGGATTCCAATATGGCCATATTTGAAGCTGTTTTTTTGCATGTGGTTGGTGTTGCCAAAATTCAATGGAGCTGCCTACATCTACGAAAATATTGTGAGAAAATATGTGAAGCCCAGTGACTATATCAATTTTATCAGCTCATCATCATCAAAGCGCCCAGAGGGACAGAATAAGGTCCTCCAAATGATGAGCCTGGATGCAAGGAAATCAGTCGAGCGTTTTATCGATCAATACGGACCCGAGGCTTTCGAAAGAGTCGTCAAAGCAGTACAGCAATGTCATCTACCAAAATTTTCTTTTGATCGATCTCTCCACCGATCATTTAGCAGATGGGTTGGAGTTGCTCTAAGAGATCTTGTTCCAGTTACCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

189

Amino Acids

22.0

Weight (kDa)

9.1

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 100	1.5e-27	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42820
fragaria_vesca	FvH4_6g37830 FvH4_6g37840
malus_domestica	MD09G1155500.v1.1 MD17G1141500.v1.1
prunus_persica	Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1 Prupe.3G170400_v2.0.a1
pyrus_communis	pycom09g07440 pycom17g13490
rosa_chinensis	RchiOBHm_Chr2g0150951 RchiOBHm_Chr2g0150981
rosa_laevigata	RLG00000020519 RLG00000020520
rosa_multiflora	Rmu_sc0000185.1_g000031 Rmu_sc0000185.1_g000032
rosa_roxburghii	Rroxscaffold_2G00096800 Rroxscaffold_2G00096820
rosa_rugosa	Rorug02G0423400 Rorug02G0423400
rosa_samantha	Rh2AG484100 Rh2AG484200 Rh2BG496300 Rh2BG496400 Rh2CG470200 Rh2CG470300 Rh2DG507200
rosa_wichuraiana	Rw2G039670 Rw2G039680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	3 cut(s)	28, 254, 485
AfaI	GTAC	1 cut(s)	465
AgsI	TTSAA	2 cut(s)	220, 259
AjnI	CCWGG	2 cut(s)	49, 387
AluBI	AGCT	4 cut(s)	172, 223, 266, 333
AluI	AGCT	4 cut(s)	172, 223, 266, 333
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	47, 209
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	28, 254, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	438, 470
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	47, 370, 431
AsuII	TTCGAA	1 cut(s)	444
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	370, 431
BalI	TGGCCA	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	519
BciT130I	CCWGG	2 cut(s)	51, 389
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	156
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	51, 389
Bme18I	GGWCC	2 cut(s)	370, 431
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	3 cut(s)	47, 370, 431
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	2 cut(s)	51, 389
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	444
Bsa29I	ATCGAT	2 cut(s)	420, 499
BsaJI	CCNNGG	1 cut(s)	435
Bse1I	ACTGG	2 cut(s)	309, 557
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	51, 389
BseCI	ATCGAT	2 cut(s)	420, 499
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	309, 557
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	49, 211
BshVI	ATCGAT	2 cut(s)	420, 499
BsiHKCI	CYCGRG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	49, 211
BsoBI	CYCGRG	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	444
Bsp143I	GATC	8 cut(s)	42, 118, 156, 421, 496, 500, 512, 547
BspANI	GGCC	2 cut(s)	49, 211
BspDI	ATCGAT	2 cut(s)	420, 499
BspLI	GGNNCC	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	309, 557
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	8 cut(s)	42, 118, 156, 421, 496, 500, 512, 547
Bst2UI	CCWGG	2 cut(s)	51, 389
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	444
BstDEI	CTNAG	2 cut(s)	24, 542
BstF5I	GGATG	1 cut(s)	397
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	8 cut(s)	45, 121, 159, 424, 499, 503, 515, 550
BstMBI	GATC	8 cut(s)	42, 118, 156, 421, 496, 500, 512, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	2 cut(s)	51, 389
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	49, 387
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
Bsu15I	ATCGAT	2 cut(s)	420, 499
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	49, 211
BsuTUI	ATCGAT	2 cut(s)	420, 499
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 316
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	47, 370, 431
ClaI	ATCGAT	2 cut(s)	420, 499
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	1 cut(s)	235
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	2 cut(s)	24, 542
DpnI	GATC	8 cut(s)	44, 120, 158, 423, 498, 502, 514, 549
DpnII	GATC	8 cut(s)	42, 118, 156, 421, 496, 500, 512, 547
EaeI	YGGCCR	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	370, 431
Eco88I	CYCGRG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRII	CCWGG	2 cut(s)	49, 387
FaeI	CATG	1 cut(s)	238
FaiI	YATR	9 cut(s)	76, 78, 136, 148, 208, 214, 236, 300, 318
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	49, 211
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	3 cut(s)	54, 199, 450
HpyAV	CCTTC	1 cut(s)	114
HpyCH4V	TGCA	5 cut(s)	14, 80, 110, 234, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	24, 542
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	8 cut(s)	42, 118, 156, 421, 496, 500, 512, 547
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	6 cut(s)	36, 63, 322, 366, 374, 401
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	113
MaeIII	GTNAC	3 cut(s)	55, 311, 559
MalI	GATC	8 cut(s)	44, 120, 158, 423, 498, 502, 514, 549
MboI	GATC	8 cut(s)	42, 118, 156, 421, 496, 500, 512, 547
MflI	RGATCY	1 cut(s)	547
MlsI	TGGCCA	1 cut(s)	211
MluCI	AATT	4 cut(s)	28, 254, 322, 485
MluNI	TGGCCA	1 cut(s)	211
MlyI	GAGTC	2 cut(s)	63, 459
MmeI	TCCRAC	2 cut(s)	161, 511
MnlI	CCTC	4 cut(s)	81, 349, 383, 430
Mox20I	TGGCCA	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	211
Msp20I	TGGCCA	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	51, 389
MvaI	CCWGG	2 cut(s)	51, 389
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	8 cut(s)	42, 118, 156, 421, 496, 500, 512, 547
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	2 cut(s)	55, 311
NspI	RCATGY	1 cut(s)	238
NspV	TTCGAA	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	2 cut(s)	62, 458
PpsI	GAGTC	2 cut(s)	62, 458
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	49, 387
PspGI	CCWGG	2 cut(s)	49, 387
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	3 cut(s)	47, 370, 431
PspPPI	RGGWCCY	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	8 cut(s)	42, 118, 156, 421, 496, 500, 512, 547
Sau96I	GGNCC	3 cut(s)	47, 370, 431
SchI	GAGTC	2 cut(s)	63, 459
ScrFI	CCNGG	2 cut(s)	51, 389
SetI	ASST	5 cut(s)	174, 225, 268, 335, 372
SfaNI	GCATC	1 cut(s)	382
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	2 cut(s)	370, 431
Sse9I	AATT	4 cut(s)	28, 254, 322, 485
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	2 cut(s)	49, 387
TaqI	TCGA	5 cut(s)	168, 408, 420, 444, 499
TasI	AATT	4 cut(s)	28, 254, 322, 485
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	2 cut(s)	131, 316
TseFI	GTSAC	2 cut(s)	55, 311
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	2 cut(s)	55, 311
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	2 cut(s)	131, 316
VpaK11BI	GGWCC	2 cut(s)	370, 431
XapI	RAATTY	3 cut(s)	28, 254, 485
XceI	RCATGY	1 cut(s)	238
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.