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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G58770 |
| fragaria_vesca | FvH4_6g37820 FvH4_6g37820 |
| malus_domestica | MD09G1155600.v1.1 MD17G1141700.v1.1 |
| prunus_persica | Prupe.3G170300_v2.0.a1 |
| pyrus_communis | pycom17g13500 |
| rosa_chinensis | RchiOBHm_Chr2g0150941 |
| rosa_laevigata | RLG00000020518 |
| rosa_multiflora | Rmu_sc0000185.1_g000030 |
| rosa_roxburghii | Rroxscaffold_2G00096830 |
| rosa_rugosa | Rorug02G0423400 Rorug02G0423400 Rorug02G0423400 |
| rosa_samantha | Rh2AG484000 Rh2BG496200 Rh2CG470100 Rh2DG507100 |
| rosa_wichuraiana | Rw2G039660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2857 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 397 |
| AatII | GACGTC | 1 cut(s) | 395 |
| Acc16I | TGCGCA | 2 cut(s) | 459, 3751 |
| Acc36I | ACCTGC | 6 cut(s) | 1468, 1543, 1871, 2255, 2857, 2986 |
| AccB1I | GGYRCC | 3 cut(s) | 568, 1844, 2866 |
| AccBSI | CCGCTC | 1 cut(s) | 499 |
| AccI | GTMKAC | 3 cut(s) | 1287, 2269, 3596 |
| AccII | CGCG | 2 cut(s) | 41, 3227 |
| AccIII | TCCGGA | 1 cut(s) | 3049 |
| AciI | CCGC | 9 cut(s) | 41, 226, 499, 1059, 1810, 2318, 2461, 2793, 3225 |
| AclWI | GGATC | 4 cut(s) | 571, 2401, 2815, 3798 |
| AcoI | YGGCCR | 1 cut(s) | 435 |
| AcuI | CTGAAG | 2 cut(s) | 1500, 2655 |
| AcyI | GRCGYC | 4 cut(s) | 392, 485, 569, 926 |
| AfaI | GTAC | 7 cut(s) | 38, 531, 1458, 2062, 2382, 2575, 3840 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 481, 1282, 1664, 3049, 3176 |
| AflII | CTTAAG | 1 cut(s) | 229 |
| AflIII | ACRYGT | 2 cut(s) | 63, 3516 |
| AjiI | CACGTC | 1 cut(s) | 64 |
| AjnI | CCWGG | 3 cut(s) | 2011, 2376, 3803 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3139, 3171 |
| Alw21I | GWGCWC | 3 cut(s) | 222, 3092, 3610 |
| Alw26I | GTCTC | 3 cut(s) | 369, 383, 3469 |
| AlwI | GGATC | 4 cut(s) | 571, 2401, 2815, 3798 |
| Ama87I | CYCGRG | 1 cut(s) | 3622 |
| Aor13HI | TCCGGA | 1 cut(s) | 3049 |
| ApaI | GGGCCC | 1 cut(s) | 214 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 746, 3578 |
| AspLEI | GCGC | 5 cut(s) | 460, 571, 2080, 3229, 3752 |
| AspS9I | GGNCC | 8 cut(s) | 210, 211, 1157, 1243, 2016, 2942, 3100, 3734 |
| AsuC2I | CCSGG | 1 cut(s) | 2879 |
| AvaI | CYCGRG | 1 cut(s) | 3622 |
| AvaII | GGWCC | 4 cut(s) | 1243, 2016, 2942, 3734 |
| BaeGI | GKGCMC | 2 cut(s) | 214, 2869 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1209, 1242 |
| BanI | GGYRCC | 3 cut(s) | 568, 1844, 2866 |
| BanII | GRGCYC | 3 cut(s) | 214, 222, 3092 |
| BauI | CACGAG | 1 cut(s) | 215 |
| BbsI | GAAGAC | 1 cut(s) | 2661 |
| Bbv12I | GWGCWC | 3 cut(s) | 222, 3092, 3610 |
| BbvCI | CCTCAGC | 2 cut(s) | 354, 1991 |
| BceAI | ACGGC | 5 cut(s) | 317, 434, 548, 2649, 3214 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 311, 345 |
| BciT130I | CCWGG | 3 cut(s) | 2013, 2378, 3805 |
| BciVI | GTATCC | 1 cut(s) | 1996 |
| BclI | TGATCA | 4 cut(s) | 1378, 1642, 1795, 2161 |
| BcnI | CCSGG | 1 cut(s) | 2879 |
| BcoDI | GTCTC | 3 cut(s) | 369, 383, 3469 |
| BfaI | CTAG | 3 cut(s) | 1571, 1722, 3306 |
| BfmI | CTRYAG | 6 cut(s) | 90, 1339, 2658, 2909, 3131, 3391 |
| BfoI | RGCGCY | 1 cut(s) | 572 |
| BfrI | CTTAAG | 1 cut(s) | 229 |
| BfuAI | ACCTGC | 6 cut(s) | 1468, 1543, 1871, 2255, 2857, 2986 |
| BfuI | GTATCC | 1 cut(s) | 1996 |
| BglII | AGATCT | 1 cut(s) | 542 |
| BmcAI | AGTACT | 1 cut(s) | 2575 |
| Bme1390I | CCNGG | 4 cut(s) | 2013, 2378, 2879, 3805 |
| Bme18I | GGWCC | 4 cut(s) | 1243, 2016, 2942, 3734 |
| BmeT110I | CYCGRG | 1 cut(s) | 3622 |
| BmgBI | CACGTC | 1 cut(s) | 64 |
| BmgT120I | GGNCC | 8 cut(s) | 210, 211, 1157, 1243, 2016, 2942, 3100, 3734 |
| BmiI | GGNNCC | 8 cut(s) | 212, 570, 1624, 1846, 1885, 2017, 2868, 3736 |
| BmrFI | CCNGG | 4 cut(s) | 2013, 2378, 2879, 3805 |
| BmsI | GCATC | 6 cut(s) | 94, 245, 1003, 2351, 2645, 3247 |
| BpiI | GAAGAC | 1 cut(s) | 2661 |
| BpmI | CTGGAG | 4 cut(s) | 2005, 2916, 3324, 3787 |
| Bpu10I | CCTNAGC | 4 cut(s) | 354, 480, 990, 1991 |
| BpuEI | CTTGAG | 2 cut(s) | 368, 1013 |
| BpuMI | CCSGG | 1 cut(s) | 2879 |
| BsaBI | GATNNNNATC | 3 cut(s) | 188, 1561, 3424 |
| BsaHI | GRCGYC | 4 cut(s) | 392, 485, 569, 926 |
| BsaJI | CCNNGG | 9 cut(s) | 57, 564, 1160, 1278, 2012, 3077, 3096, 3110, 3405 |
| BsaWI | WCCGGW | 1 cut(s) | 3049 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1590, 1620, 3493, 3523 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 481, 1282, 1664, 3049, 3176 |
| Bse3DI | GCAATG | 2 cut(s) | 2859, 3375 |
| Bse8I | GATNNNNATC | 3 cut(s) | 188, 1561, 3424 |
| BseAI | TCCGGA | 1 cut(s) | 3049 |
| BseBI | CCWGG | 3 cut(s) | 2013, 2378, 3805 |
| BseDI | CCNNGG | 9 cut(s) | 57, 564, 1160, 1278, 2012, 3077, 3096, 3110, 3405 |
| BseJI | GATNNNNATC | 3 cut(s) | 188, 1561, 3424 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 481, 1282, 1664, 3049, 3176 |
| BseMI | GCAATG | 2 cut(s) | 2859, 3375 |
| BseRI | GAGGAG | 3 cut(s) | 509, 746, 3082 |
| BseSI | GKGCMC | 2 cut(s) | 214, 2869 |
| BsgI | GTGCAG | 2 cut(s) | 1790, 2057 |
| Bsh1236I | CGCG | 2 cut(s) | 41, 3227 |
| BshNI | GGYRCC | 3 cut(s) | 568, 1844, 2866 |
| BsiHKAI | GWGCWC | 3 cut(s) | 222, 3092, 3610 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3622 |
| BsiSI | CCGG | 3 cut(s) | 2879, 3050, 3311 |
| BslFI | GGGAC | 2 cut(s) | 1645, 3720 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 481, 1282, 1664, 3049, 3176 |
| BsmAI | GTCTC | 3 cut(s) | 369, 383, 3469 |
| BsmBI | CGTCTC | 1 cut(s) | 383 |
| BsmFI | GGGAC | 2 cut(s) | 1645, 3720 |
| BsmI | GAATGC | 4 cut(s) | 460, 1023, 1548, 3059 |
| BsoBI | CYCGRG | 1 cut(s) | 3622 |
| Bsp120I | GGGCCC | 1 cut(s) | 210 |
| Bsp1286I | GDGCHC | 5 cut(s) | 214, 222, 2869, 3092, 3610 |
| Bsp13I | TCCGGA | 1 cut(s) | 3049 |
| Bsp19I | CCATGG | 2 cut(s) | 1278, 3077 |
| BspACI | CCGC | 9 cut(s) | 41, 226, 499, 1059, 1810, 2318, 2461, 2793, 3225 |
| BspEI | TCCGGA | 1 cut(s) | 3049 |
| BspFNI | CGCG | 2 cut(s) | 41, 3227 |
| BspHI | TCATGA | 3 cut(s) | 100, 1036, 2340 |
| BspLI | GGNNCC | 8 cut(s) | 212, 570, 1624, 1846, 1885, 2017, 2868, 3736 |
| BspMAI | CTGCAG | 2 cut(s) | 94, 1343 |
| BspMI | ACCTGC | 6 cut(s) | 1468, 1543, 1871, 2255, 2857, 2986 |
| BspPI | GGATC | 4 cut(s) | 571, 2401, 2815, 3798 |
| BspT107I | GGYRCC | 3 cut(s) | 568, 1844, 2866 |
| BspTI | CTTAAG | 1 cut(s) | 229 |
| BsrBI | CCGCTC | 1 cut(s) | 499 |
| BsrDI | GCAATG | 2 cut(s) | 2859, 3375 |
| BssECI | CCNNGG | 9 cut(s) | 57, 564, 1160, 1278, 2012, 3077, 3096, 3110, 3405 |
| BssNAI | GTATAC | 1 cut(s) | 2270 |
| BssNI | GRCGYC | 4 cut(s) | 392, 485, 569, 926 |
| BssSI | CACGAG | 1 cut(s) | 215 |
| BssT1I | CCWWGG | 6 cut(s) | 1160, 1278, 3077, 3096, 3110, 3405 |
| Bst1107I | GTATAC | 1 cut(s) | 2270 |
| Bst2BI | CACGAG | 1 cut(s) | 215 |
| Bst2UI | CCWGG | 3 cut(s) | 2013, 2378, 3805 |
| Bst6I | CTCTTC | 3 cut(s) | 533, 950, 1288 |
| BstACI | GRCGYC | 4 cut(s) | 392, 485, 569, 926 |
| BstAFI | CTTAAG | 1 cut(s) | 229 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3374 |
| BstC8I | GCNNGC | 4 cut(s) | 1073, 1339, 1546, 3104 |
| BstDSI | CCRYGG | 4 cut(s) | 57, 564, 1278, 3077 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 479 |
| BstFNI | CGCG | 2 cut(s) | 41, 3227 |
| BstH2I | RGCGCY | 1 cut(s) | 572 |
| BstHHI | GCGC | 5 cut(s) | 460, 571, 2080, 3229, 3752 |
| BstMAI | GTCTC | 3 cut(s) | 369, 383, 3469 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 455, 1000, 1469, 2298, 2301, 2620, 3235, 3374, 3488 |
| BstNI | CCWGG | 3 cut(s) | 2013, 2378, 3805 |
| BstNSI | RCATGY | 5 cut(s) | 1075, 1127, 2693, 3125, 3338 |
| BstSCI | CCNGG | 4 cut(s) | 2011, 2376, 2877, 3803 |
| BstSFI | CTRYAG | 6 cut(s) | 90, 1339, 2658, 2909, 3131, 3391 |
| BstSLI | GKGCMC | 2 cut(s) | 214, 2869 |
| BstUI | CGCG | 2 cut(s) | 41, 3227 |
| BstV2I | GAAGAC | 1 cut(s) | 2661 |
| BstX2I | RGATCY | 2 cut(s) | 542, 576 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3385 |
| BstYI | RGATCY | 2 cut(s) | 542, 576 |
| BstZ17I | GTATAC | 1 cut(s) | 2270 |
| BsuI | GTATCC | 1 cut(s) | 1996 |
| BtgI | CCRYGG | 4 cut(s) | 57, 564, 1278, 3077 |
| BtrI | CACGTC | 1 cut(s) | 64 |
| BtsI | GCAGTG | 2 cut(s) | 84, 327 |
| BtsIMutI | CAGTG | 9 cut(s) | 84, 327, 438, 667, 887, 1633, 2362, 2403, 3589 |
| BveI | ACCTGC | 6 cut(s) | 1468, 1543, 1871, 2255, 2857, 2986 |
| Cac8I | GCNNGC | 4 cut(s) | 1073, 1339, 1546, 3104 |
| CciI | TCATGA | 3 cut(s) | 100, 1036, 2340 |
| CfoI | GCGC | 5 cut(s) | 460, 571, 2080, 3229, 3752 |
| Cfr13I | GGNCC | 8 cut(s) | 210, 211, 1157, 1243, 2016, 2942, 3100, 3734 |
| CseI | GACGC | 2 cut(s) | 474, 934 |
| CsiI | ACCWGGT | 1 cut(s) | 2376 |
| Csp6I | GTAC | 7 cut(s) | 37, 530, 1457, 2061, 2381, 2574, 3839 |
| CviQI | GTAC | 7 cut(s) | 37, 530, 1457, 2061, 2381, 2574, 3839 |
| DinI | GGCGCC | 1 cut(s) | 570 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 397 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 397 |
| EaeI | YGGCCR | 1 cut(s) | 435 |
| Eam1104I | CTCTTC | 3 cut(s) | 533, 950, 1288 |
| EarI | CTCTTC | 3 cut(s) | 533, 950, 1288 |
| Ecl136II | GAGCTC | 2 cut(s) | 220, 3090 |
| Eco130I | CCWWGG | 6 cut(s) | 1160, 1278, 3077, 3096, 3110, 3405 |
| Eco147I | AGGCCT | 3 cut(s) | 170, 1337, 2331 |
| Eco24I | GRGCYC | 3 cut(s) | 214, 222, 3092 |
| Eco32I | GATATC | 3 cut(s) | 304, 1563, 3799 |
| Eco47I | GGWCC | 4 cut(s) | 1243, 2016, 2942, 3734 |
| Eco53kI | GAGCTC | 2 cut(s) | 220, 3090 |
| Eco57I | CTGAAG | 2 cut(s) | 1500, 2655 |
| Eco88I | CYCGRG | 1 cut(s) | 3622 |
| EcoICRI | GAGCTC | 2 cut(s) | 220, 3090 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 479 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2016, 3100 |
| EcoRI | GAATTC | 2 cut(s) | 323, 2984 |
| EcoRII | CCWGG | 3 cut(s) | 2011, 2376, 3803 |
| EcoRV | GATATC | 3 cut(s) | 304, 1563, 3799 |
| EcoT14I | CCWWGG | 6 cut(s) | 1160, 1278, 3077, 3096, 3110, 3405 |
| EcoT22I | ATGCAT | 1 cut(s) | 3240 |
| EcoT38I | GRGCYC | 3 cut(s) | 214, 222, 3092 |
| EgeI | GGCGCC | 1 cut(s) | 570 |
| EheI | GGCGCC | 1 cut(s) | 570 |
| ErhI | CCWWGG | 6 cut(s) | 1160, 1278, 3077, 3096, 3110, 3405 |
| Esp3I | CGTCTC | 1 cut(s) | 383 |
| FaqI | GGGAC | 2 cut(s) | 1645, 3720 |
| FauNDI | CATATG | 1 cut(s) | 1540 |
| FbaI | TGATCA | 4 cut(s) | 1378, 1642, 1795, 2161 |
| FblI | GTMKAC | 3 cut(s) | 1287, 2269, 3596 |
| FriOI | GRGCYC | 3 cut(s) | 214, 222, 3092 |
| FspAI | RTGCGCAY | 1 cut(s) | 459 |
| FspBI | CTAG | 3 cut(s) | 1571, 1722, 3306 |
| FspI | TGCGCA | 2 cut(s) | 459, 3751 |
| GlaI | GCGC | 5 cut(s) | 459, 570, 2079, 3228, 3751 |
| GsuI | CTGGAG | 4 cut(s) | 2005, 2916, 3324, 3787 |
| HaeII | RGCGCY | 1 cut(s) | 572 |
| HapII | CCGG | 3 cut(s) | 2879, 3050, 3311 |
| HgaI | GACGC | 2 cut(s) | 474, 934 |
| HhaI | GCGC | 5 cut(s) | 460, 571, 2080, 3229, 3752 |
| Hin1I | GRCGYC | 4 cut(s) | 392, 485, 569, 926 |
| Hin6I | GCGC | 5 cut(s) | 458, 569, 2078, 3227, 3750 |
| HinP1I | GCGC | 5 cut(s) | 458, 569, 2078, 3227, 3750 |
| HincII | GTYRAC | 4 cut(s) | 276, 286, 445, 3619 |
| HindII | GTYRAC | 4 cut(s) | 276, 286, 445, 3619 |
| HindIII | AAGCTT | 1 cut(s) | 3688 |
| HpaI | GTTAAC | 2 cut(s) | 276, 286 |
| HpaII | CCGG | 3 cut(s) | 2879, 3050, 3311 |
| Hpy99I | CGWCG | 5 cut(s) | 397, 400, 403, 490, 2440 |
| HpyCH4IV | ACGT | 5 cut(s) | 63, 392, 1041, 3518, 3615 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 455, 1000, 1469, 2298, 2301, 2620, 3235, 3374, 3488 |
| HpySE526I | ACGT | 5 cut(s) | 63, 392, 1041, 3518, 3615 |
| Hsp92I | GRCGYC | 4 cut(s) | 392, 485, 569, 926 |
| HspAI | GCGC | 5 cut(s) | 458, 569, 2078, 3227, 3750 |
| KasI | GGCGCC | 1 cut(s) | 568 |
| Kpn2I | TCCGGA | 1 cut(s) | 3049 |
| Ksp22I | TGATCA | 4 cut(s) | 1378, 1642, 1795, 2161 |
| KspAI | GTTAAC | 2 cut(s) | 276, 286 |
| LmnI | GCTCC | 8 cut(s) | 225, 496, 1667, 1697, 2897, 3095, 3343, 3755 |
| LweI | GCATC | 6 cut(s) | 94, 245, 1003, 2351, 2645, 3247 |
| MabI | ACCWGGT | 1 cut(s) | 2376 |
| MaeI | CTAG | 3 cut(s) | 1571, 1722, 3306 |
| MaeII | ACGT | 5 cut(s) | 63, 392, 1041, 3518, 3615 |
| MaeIII | GTNAC | 6 cut(s) | 853, 907, 2236, 2426, 2835, 3117 |
| MbiI | CCGCTC | 1 cut(s) | 499 |
| MfeI | CAATTG | 2 cut(s) | 1311, 2484 |
| MflI | RGATCY | 2 cut(s) | 542, 576 |
| MhlI | GDGCHC | 5 cut(s) | 214, 222, 2869, 3092, 3610 |
| Mly113I | GGCGCC | 1 cut(s) | 569 |
| MlyI | GAGTC | 4 cut(s) | 371, 1969, 3614, 3710 |
| MmeI | TCCRAC | 3 cut(s) | 708, 1980, 1988 |
| Mph1103I | ATGCAT | 1 cut(s) | 3240 |
| MroI | TCCGGA | 1 cut(s) | 3049 |
| MroXI | GAANNNNTTC | 2 cut(s) | 746, 3578 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3383 |
| MspA1I | CMGCKG | 2 cut(s) | 471, 1990 |
| MspCI | CTTAAG | 1 cut(s) | 229 |
| MspI | CCGG | 3 cut(s) | 2879, 3050, 3311 |
| MspR9I | CCNGG | 4 cut(s) | 2013, 2378, 2879, 3805 |
| MunI | CAATTG | 2 cut(s) | 1311, 2484 |
| Mva1269I | GAATGC | 4 cut(s) | 460, 1023, 1548, 3059 |
| MvaI | CCWGG | 3 cut(s) | 2013, 2378, 3805 |
| MvnI | CGCG | 2 cut(s) | 41, 3227 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 455, 1000, 1469, 2298, 2301, 2620, 3235, 3374, 3488 |
| NarI | GGCGCC | 1 cut(s) | 569 |
| NciI | CCSGG | 1 cut(s) | 2879 |
| NcoI | CCATGG | 2 cut(s) | 1278, 3077 |
| NdeI | CATATG | 1 cut(s) | 1540 |
| NlaIV | GGNNCC | 8 cut(s) | 212, 570, 1624, 1846, 1885, 2017, 2868, 3736 |
| NmeAIII | GCCGAG | 1 cut(s) | 3231 |
| NmuCI | GTSAC | 2 cut(s) | 853, 2426 |
| NsbI | TGCGCA | 2 cut(s) | 459, 3751 |
| NsiI | ATGCAT | 1 cut(s) | 3240 |
| NspI | RCATGY | 5 cut(s) | 1075, 1127, 2693, 3125, 3338 |
| PaeI | GCATGC | 1 cut(s) | 1075 |
| PaeR7I | CTCGAG | 1 cut(s) | 3622 |
| PagI | TCATGA | 3 cut(s) | 100, 1036, 2340 |
| PaqCI | CACCTGC | 1 cut(s) | 2857 |
| PceI | AGGCCT | 3 cut(s) | 170, 1337, 2331 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 389, 398 |
| PctI | GAATGC | 4 cut(s) | 460, 1023, 1548, 3059 |
| PdmI | GAANNNNTTC | 2 cut(s) | 746, 3578 |
| PflFI | GACNNNGTC | 1 cut(s) | 394 |
| PfoI | TCCNGGA | 1 cut(s) | 2877 |
| PleI | GAGTC | 4 cut(s) | 370, 1968, 3614, 3709 |
| PluTI | GGCGCC | 1 cut(s) | 572 |
| PpsI | GAGTC | 4 cut(s) | 370, 1968, 3614, 3709 |
| PpuMI | RGGWCCY | 1 cut(s) | 2016 |
| Psp124BI | GAGCTC | 2 cut(s) | 222, 3092 |
| Psp5II | RGGWCCY | 1 cut(s) | 2016 |
| Psp6I | CCWGG | 3 cut(s) | 2011, 2376, 3803 |
| PspGI | CCWGG | 3 cut(s) | 2011, 2376, 3803 |
| PspN4I | GGNNCC | 8 cut(s) | 212, 570, 1624, 1846, 1885, 2017, 2868, 3736 |
| PspOMI | GGGCCC | 1 cut(s) | 210 |
| PspPI | GGNCC | 8 cut(s) | 210, 211, 1157, 1243, 2016, 2942, 3100, 3734 |
| PspPPI | RGGWCCY | 1 cut(s) | 2016 |
| PspXI | VCTCGAGB | 1 cut(s) | 3622 |
| PstI | CTGCAG | 2 cut(s) | 94, 1343 |
| PsuI | RGATCY | 2 cut(s) | 542, 576 |
| PsyI | GACNNNGTC | 1 cut(s) | 394 |
| PvuII | CAGCTG | 2 cut(s) | 471, 1990 |
| RsaI | GTAC | 7 cut(s) | 38, 531, 1458, 2062, 2382, 2575, 3840 |
| RsaNI | GTAC | 7 cut(s) | 37, 530, 1457, 2061, 2381, 2574, 3839 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3383 |
| SacI | GAGCTC | 2 cut(s) | 222, 3092 |
| Sau96I | GGNCC | 8 cut(s) | 210, 211, 1157, 1243, 2016, 2942, 3100, 3734 |
| ScaI | AGTACT | 1 cut(s) | 2575 |
| SchI | GAGTC | 4 cut(s) | 371, 1969, 3614, 3710 |
| ScrFI | CCNGG | 4 cut(s) | 2013, 2378, 2879, 3805 |
| SduI | GDGCHC | 5 cut(s) | 214, 222, 2869, 3092, 3610 |
| SexAI | ACCWGGT | 1 cut(s) | 2376 |
| SfaNI | GCATC | 6 cut(s) | 94, 245, 1003, 2351, 2645, 3247 |
| SfcI | CTRYAG | 6 cut(s) | 90, 1339, 2658, 2909, 3131, 3391 |
| SfoI | GGCGCC | 1 cut(s) | 570 |
| Sfr274I | CTCGAG | 1 cut(s) | 3622 |
| SinI | GGWCC | 4 cut(s) | 1243, 2016, 2942, 3734 |
| SlaI | CTCGAG | 1 cut(s) | 3622 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3383 |
| SmlI | CTYRAG | 4 cut(s) | 229, 347, 1028, 3622 |
| SmoI | CTYRAG | 4 cut(s) | 229, 347, 1028, 3622 |
| SphI | GCATGC | 1 cut(s) | 1075 |
| SseBI | AGGCCT | 3 cut(s) | 170, 1337, 2331 |
| SsiI | CCGC | 9 cut(s) | 41, 226, 499, 1059, 1810, 2318, 2461, 2793, 3225 |
| SspDI | GGCGCC | 1 cut(s) | 568 |
| SspMI | CTAG | 3 cut(s) | 1571, 1722, 3306 |
| SstI | GAGCTC | 2 cut(s) | 222, 3092 |
| StuI | AGGCCT | 3 cut(s) | 170, 1337, 2331 |
| StyD4I | CCNGG | 4 cut(s) | 2011, 2376, 2877, 3803 |
| StyI | CCWWGG | 6 cut(s) | 1160, 1278, 3077, 3096, 3110, 3405 |
| TaiI | ACGT | 5 cut(s) | 66, 395, 1044, 3521, 3618 |
| TaqI | TCGA | 8 cut(s) | 165, 321, 360, 465, 488, 2438, 3602, 3623 |
| TaqII | GACCGA | 1 cut(s) | 1493 |
| TatI | WGTACW | 1 cut(s) | 2573 |
| TauI | GCSGC | 1 cut(s) | 44 |
| TscAI | CASTG | 9 cut(s) | 91, 334, 445, 667, 894, 1633, 2362, 2403, 3589 |
| TseFI | GTSAC | 2 cut(s) | 853, 2426 |
| Tsp45I | GTSAC | 2 cut(s) | 853, 2426 |
| TspGWI | ACGGA | 1 cut(s) | 905 |
| TspRI | CASTG | 9 cut(s) | 91, 334, 445, 667, 894, 1633, 2362, 2403, 3589 |
| Tth111I | GACNNNGTC | 1 cut(s) | 394 |
| Vha464I | CTTAAG | 1 cut(s) | 229 |
| VpaK11BI | GGWCC | 4 cut(s) | 1243, 2016, 2942, 3734 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 479 |
| XbaI | TCTAGA | 1 cut(s) | 1570 |
| XceI | RCATGY | 5 cut(s) | 1075, 1127, 2693, 3125, 3338 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1837, 3784 |
| XhoI | CTCGAG | 1 cut(s) | 3622 |
| XmiI | GTMKAC | 3 cut(s) | 1287, 2269, 3596 |
| XmnI | GAANNNNTTC | 2 cut(s) | 746, 3578 |
| XspI | CTAG | 3 cut(s) | 1571, 1722, 3306 |
| ZraI | GACGTC | 1 cut(s) | 393 |
| ZrmI | AGTACT | 1 cut(s) | 2575 |
| Zsp2I | ATGCAT | 1 cut(s) | 3240 |