Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017204

Physical Location & Seq

Genomic Coordinates Reverse (-)

21948501 .. 21949796

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G59400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCGACCACAAACTCTCTCCACCACCACCACCACTCCTCTCCTTCTTACACACACCACCGCAACAATCTCCATTGCCAATCTCACTTCGGACCAACTTCTCTTTCCCTCAAACAACCCACTTCCGCCGCAACATTCTCACTAATCTGCTCTGCTTCTTCCACCTCCTCCTCCACCACCGCCGTATCTGCCGTTTCAACCACAAACGCCTCCGCCACAACTGCCGAAACCGCGACCATATTCGACGTTCTGGAGAACCATCTCGTCAATCAAAACTTCAGACAAGCCGACGAGGAGACACGGAGATTACTCATTCAGATATCCGGAGAAGCCGCCGTGAAACGTGGCTACGTTTTCTTCTCCGAGGTGAAAACAATCTCCCCCGAAGATCTTCAAGCTATCGACAATCTATGGATTAAACACAGTGATGGTAGATTCGGATACAGCGTGCAACGCAAAATCTGGTTAAAAGTGAAGAAAGATTTCACAAGATTCTTCGTTAAAGTTGAGTGGATGAAGCTTCTTGACACAGAGGTTGTTCAATACAATTACAGAGCGTTTCCTGACGAATTCAAGTGGGAGCTTAACGATGAAACGCCTTTAGGACACTTACCGCTCACAAACGCCTTGAGAGGAACGCAGCTTCTGAAATGCGTTTTAAGCCATCCTGCGTTTGCGACAGCTGATGATAACAGTGGAGAAACAGAAGACGAGCTTAACAGAGGTGTTGCGGTGGCTAAGGAACAGGCAGGAGTAGGAGCAGACAAAAGAGTGTTTAAAACAAATTACAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0019899 GO:0023052 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046906 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0065007 GO:0065009 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUN4

Protein Analysis

265

Amino Acids

29.66

Weight (kDa)

6.67

Isoelectric Point (pI)

24.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUN4	PF05419	77 - 223	2e-50	GUN4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59400
fragaria_vesca	FvH4_4g10790
malus_domestica	MD04G1040300.v1.1
prunus_persica	Prupe.1G193000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406801
rosa_laevigata	RLG00000008758
rosa_multiflora	Rmu_sc0006408.1_g000008
rosa_roxburghii	Rroxscaffold_5G00351580
rosa_rugosa	Rorug04G0073400
rosa_samantha	Rh4AG140700 Rh4CG147600 Rh4DG134700
rosa_wichuraiana	Rw4G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	616
AccII	CGCG	1 cut(s)	233
AccIII	TCCGGA	1 cut(s)	323
AciI	CCGC	9 cut(s)	61, 126, 129, 180, 213, 231, 333, 614, 731
AcsI	RAATTY	1 cut(s)	569
AcuI	CTGAAG	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	198, 395, 542, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	7 cut(s)	398, 520, 583, 643, 683, 715, 792
AluI	AGCT	7 cut(s)	398, 520, 583, 643, 683, 715, 792
Alw26I	GTCTC	1 cut(s)	290
AlwNI	CAGNNNCTG	2 cut(s)	646, 795
Aor13HI	TCCGGA	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	640
ApoI	RAATTY	1 cut(s)	569
Asp700I	GAANNNNTTC	2 cut(s)	390, 482
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	168, 201
BbsI	GAAGAC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	3 cut(s)	267, 422, 672
BceAI	ACGGC	3 cut(s)	167, 176, 320
BciVI	GTATCC	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	129, 333, 641
BlsI	GCNGC	3 cut(s)	130, 334, 642
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	714
BpmI	CTGGAG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	1 cut(s)	649
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse3DI	GCAATG	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	519, 664
BseMI	GCAATG	1 cut(s)	73
BseRI	GAGGAG	4 cut(s)	28, 157, 160, 308
BseXI	GCAGC	1 cut(s)	652
Bsh1236I	CGCG	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	290
Bsp13I	TCCGGA	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	9 cut(s)	61, 126, 129, 180, 213, 231, 333, 614, 731
BspEI	TCCGGA	1 cut(s)	323
BspFNI	CGCG	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	425, 695
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	1 cut(s)	738
BstF5I	GGATG	2 cut(s)	519, 664
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	5 cut(s)	188, 221, 230, 453, 660
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	519, 664
BtsIMutI	CAGTG	2 cut(s)	430, 700
Cac8I	GCNNGC	1 cut(s)	449
CaiI	CAGNNNCTG	2 cut(s)	646, 795
Cfr13I	GGNCC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
DraI	TTTAAA	1 cut(s)	778
EciI	GGCGGA	2 cut(s)	115, 202
Eco32I	GATATC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	569
EcoRV	GATATC	1 cut(s)	321
FaiI	YATR	2 cut(s)	239, 412
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
Fnu4HI	GCNGC	3 cut(s)	129, 333, 641
FokI	GGATG	2 cut(s)	526, 651
Fsp4HI	GCNGC	3 cut(s)	129, 333, 641
GluI	GCNGC	3 cut(s)	129, 333, 641
GsuI	CTGGAG	1 cut(s)	272
HapII	CCGG	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	2 cut(s)	435, 492
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	379
Hpy188I	TCNGA	7 cut(s)	92, 281, 318, 364, 440, 648, 797
Hpy188III	TCNNGA	4 cut(s)	251, 324, 524, 563
Hpy99I	CGWCG	2 cut(s)	248, 293
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	2 cut(s)	425, 695
HpyCH4IV	ACGT	3 cut(s)	246, 343, 351
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	5 cut(s)	188, 221, 230, 453, 660
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	3 cut(s)	246, 343, 351
Kpn2I	TCCGGA	1 cut(s)	323
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	580, 758
LpnPI	CCDG	7 cut(s)	236, 337, 448, 576, 681, 731, 735
Lsp1109I	GCAGC	1 cut(s)	652
MaeII	ACGT	3 cut(s)	246, 343, 351
MalI	GATC	1 cut(s)	390
MbiI	CCGCTC	1 cut(s)	616
MboI	GATC	1 cut(s)	388
MboII	GAAGA	7 cut(s)	150, 349, 383, 398, 487, 487, 719
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	3 cut(s)	547, 569, 784
MroI	TCCGGA	1 cut(s)	323
MroXI	GAANNNNTTC	2 cut(s)	390, 482
MseI	TTAA	7 cut(s)	417, 467, 501, 585, 659, 717, 777
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	1 cut(s)	324
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	5 cut(s)	188, 221, 230, 453, 660
NdeII	GATC	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PdmI	GAANNNNTTC	2 cut(s)	390, 482
PfeI	GAWTC	2 cut(s)	435, 492
PkrI	GCNGC	3 cut(s)	130, 334, 642
PspPI	GGNCC	1 cut(s)	92
PstNI	CAGNNNCTG	2 cut(s)	646, 795
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	683
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	7 cut(s)	417, 467, 501, 585, 659, 717, 777
SatI	GCNGC	3 cut(s)	129, 333, 641
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	92
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	3 cut(s)	547, 569, 784
SsiI	CCGC	9 cut(s)	61, 126, 129, 180, 213, 231, 333, 614, 731
TaaI	ACNGT	2 cut(s)	425, 695
TaiI	ACGT	3 cut(s)	249, 346, 354
TaqI	TCGA	2 cut(s)	243, 402
TasI	AATT	3 cut(s)	547, 569, 784
TauI	GCSGC	2 cut(s)	131, 335
TfiI	GAWTC	2 cut(s)	435, 492
Tru1I	TTAA	7 cut(s)	417, 467, 501, 585, 659, 717, 777
Tru9I	TTAA	7 cut(s)	417, 467, 501, 585, 659, 717, 777
TscAI	CASTG	2 cut(s)	430, 700
TseI	GCWGC	1 cut(s)	640
TspDTI	ATGAA	2 cut(s)	530, 606
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	2 cut(s)	430, 700
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	569
XmnI	GAANNNNTTC	2 cut(s)	390, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.