Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017204

Physical Location & Seq

Genomic Coordinates Forward (+)

27944302 .. 27947299

Gene Structure 2998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCTCATAACCAAAATAGATATAGAACACTGACCCTATGTCCTCTCCCTCTTTCAGAGCAAAAGCTGGCTTCAAGCTTGGCAGATAGTGTTACTCAAATGTCTCAAGATTGTGATCGTGGAATCCTTGAAGCCCTGAAGGTGCTTAGCTTGCAAGGATTTGCCTCAATTTTGGAGCCTAACCTCTCACCACCTTCACTCTCTCGTGATCTCTTCTACCAAAACGTTCTCAGTCTCGCCCACCACCTCATTTTCGACTCCTTCTTCTTCCTCCTCCAATTCCAACACCTTCGACCTCCTACAGCAGCACCTCTCGGCCCAAAACTTCCGCGAAGCGGACGAAGAAACTCGACGCCTCCTCATCGTCCTCGCAGGCGAGGCAGCCCAAAAGCGAGGATACGTCTTTTCTCCGAGGTCCAGTTCATCCCCGAAGCCGACCTCAAAGCCATTGACGACCTCTGGAGACAGCACAGCAACAACAGGTTCGGCTACTCCGTCCAGAAGAGGATATTCTTCGAAAAGGTTAACCAGGACTTCACCAACTTTTTCATCAAAGTCGGGTGGATGAAGAAGCTCGACACCGAGGTCGACCAGTACAACTACAGAGCTTTCCCTAACGAATTCATCTGGGAGCTCAACGACGACACACCCGAGGGTCATCTGCCATTGACGAATGCTTTGAGAGGGACCCAGTTGCTGAAATGCGTTCTGACCCATCCAGCATTTAAGAACACCGAAGAAGAAGAACGGCTACTCCAAGCGGGCAGGGCCGCCGTTGAAGATAATAAAGCAGCTAGTGGTGGAGGTTTGAAGGGGTTAATGGATGGATCCAAACCTCTGAACAAGAGGGTGCTCAAATCAGACTATAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0019899 GO:0023052 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046906 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0065007 GO:0065009 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUN4

Protein Analysis

291

Amino Acids

33.24

Weight (kDa)

9.42

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUN4	PF05419	135 - 240	7.2e-33	GUN4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59400
fragaria_vesca	FvH4_4g10790
malus_domestica	MD04G1040300.v1.1
prunus_persica	Prupe.1G193000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406801
rosa_laevigata	RLG00000008758
rosa_multiflora	Rmu_sc0006408.1_g000008
rosa_roxburghii	Rroxscaffold_5G00351580
rosa_rugosa	Rorug04G0073400
rosa_samantha	Rh4AG140700 Rh4CG147600 Rh4DG134700
rosa_wichuraiana	Rw4G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	1 cut(s)	331
AciI	CCGC	4 cut(s)	329, 336, 761, 771
AclI	AACGTT	1 cut(s)	225
AclWI	GGATC	2 cut(s)	822, 835
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	75, 131, 779, 811
AhdI	GACNNNNNGTC	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	528
AloI	GAACNNNNNNTCC	2 cut(s)	738, 770
AluBI	AGCT	8 cut(s)	67, 78, 150, 574, 608, 634, 794, 870
AluI	AGCT	8 cut(s)	67, 78, 150, 574, 608, 634, 794, 870
Alw21I	GWGCWC	2 cut(s)	636, 855
Alw26I	GTCTC	4 cut(s)	9, 108, 239, 457
AlwI	GGATC	2 cut(s)	822, 835
AlwNI	CAGNNNCTG	1 cut(s)	697
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	2 cut(s)	316, 768
ApeKI	GCWGC	3 cut(s)	305, 381, 791
ApoI	RAATTY	1 cut(s)	620
ArsI	GACNNNNNNTTYG	2 cut(s)	661, 693
AspS9I	GGNCC	4 cut(s)	317, 415, 687, 768
AsuHPI	GGTGA	2 cut(s)	180, 529
AsuII	TTCGAA	1 cut(s)	516
AvaI	CYCGRG	1 cut(s)	650
AvaII	GGWCC	2 cut(s)	415, 687
BamHI	GGATCC	1 cut(s)	827
BanII	GRGCYC	1 cut(s)	636
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BauI	CACGAG	1 cut(s)	204
Bbv12I	GWGCWC	2 cut(s)	636, 855
BbvI	GCAGC	3 cut(s)	317, 393, 803
BccI	CCATC	2 cut(s)	723, 818
BceAI	ACGGC	2 cut(s)	758, 764
BciT130I	CCWGG	1 cut(s)	530
BciVI	GTATCC	1 cut(s)	390
BcoDI	GTCTC	4 cut(s)	9, 108, 239, 457
BfaI	CTAG	1 cut(s)	795
BfmI	CTRYAG	3 cut(s)	300, 601, 865
BfuI	GTATCC	1 cut(s)	390
BisI	GCNGC	4 cut(s)	306, 382, 771, 792
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	4 cut(s)	307, 383, 772, 793
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	2 cut(s)	415, 687
BmeRI	GACNNNNNGTC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	4 cut(s)	317, 415, 687, 768
BmiI	GGNNCC	4 cut(s)	177, 688, 689, 829
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	685
BmuI	ACTGGG	1 cut(s)	685
BpmI	CTGGAG	1 cut(s)	481
Bpu1102I	GCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	411, 582, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	3 cut(s)	418, 592, 691
Bse8I	GATNNNNATC	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	3 cut(s)	411, 582, 651
BseGI	GGATG	4 cut(s)	423, 570, 715, 829
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	3 cut(s)	418, 592, 691
BseRI	GAGGAG	2 cut(s)	263, 348
BseXI	GCAGC	3 cut(s)	317, 393, 803
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	318, 770
BsiHKAI	GWGCWC	2 cut(s)	636, 855
BsiHKCI	CYCGRG	1 cut(s)	650
BslFI	GGGAC	1 cut(s)	700
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	4 cut(s)	9, 108, 239, 457
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	679
BsnI	GGCC	2 cut(s)	318, 770
BsoBI	CYCGRG	1 cut(s)	650
Bsp119I	TTCGAA	1 cut(s)	516
Bsp1286I	GDGCHC	2 cut(s)	636, 855
Bsp143I	GATC	3 cut(s)	115, 208, 827
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	4 cut(s)	329, 336, 761, 771
BspANI	GGCC	2 cut(s)	318, 770
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	331
BspLI	GGNNCC	4 cut(s)	177, 688, 689, 829
BspPI	GGATC	2 cut(s)	822, 835
BspT104I	TTCGAA	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	418, 592, 691
BssECI	CCNNGG	3 cut(s)	411, 582, 651
BssMI	GATC	3 cut(s)	115, 208, 827
BssNI	GRCGYC	1 cut(s)	353
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	530
Bst6I	CTCTTC	2 cut(s)	218, 497
BstACI	GRCGYC	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	516
BstC8I	GCNNGC	4 cut(s)	69, 152, 374, 763
BstDEI	CTNAG	2 cut(s)	146, 230
BstF5I	GGATG	4 cut(s)	423, 570, 715, 829
BstFNI	CGCG	1 cut(s)	331
BstKTI	GATC	3 cut(s)	118, 211, 830
BstMAI	GTCTC	4 cut(s)	9, 108, 239, 457
BstMBI	GATC	3 cut(s)	115, 208, 827
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 378, 767
BstNI	CCWGG	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	3 cut(s)	300, 601, 865
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	3 cut(s)	317, 393, 803
BstX2I	RGATCY	1 cut(s)	827
BstYI	RGATCY	1 cut(s)	827
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	318, 770
BtsCI	GGATG	4 cut(s)	423, 570, 715, 829
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	4 cut(s)	69, 152, 374, 763
CaiI	CAGNNNCTG	1 cut(s)	697
Cfr13I	GGNCC	4 cut(s)	317, 415, 687, 768
CseI	GACGC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	595
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	2 cut(s)	146, 230
DpnI	GATC	3 cut(s)	117, 210, 829
DpnII	GATC	3 cut(s)	115, 208, 827
DrdI	GACNNNNNNGTC	1 cut(s)	584
DriI	GACNNNNNGTC	1 cut(s)	39
DseDI	GACNNNNNNGTC	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	218, 497
Eam1105I	GACNNNNNGTC	1 cut(s)	39
EarI	CTCTTC	2 cut(s)	218, 497
Ecl136II	GAGCTC	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	636
Eco47I	GGWCC	2 cut(s)	415, 687
Eco53kI	GAGCTC	1 cut(s)	634
Eco57I	CTGAAG	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	634
EcoO109I	RGGNCCY	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	636
FaiI	YATR	4 cut(s)	9, 24, 40, 867
FaqI	GGGAC	1 cut(s)	700
FauI	CCCGC	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	4 cut(s)	306, 382, 771, 792
FokI	GGATG	4 cut(s)	410, 577, 702, 836
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	4 cut(s)	306, 382, 771, 792
FspBI	CTAG	1 cut(s)	795
GluI	GCNGC	4 cut(s)	306, 382, 771, 792
GsuI	CTGGAG	1 cut(s)	481
HaeIII	GGCC	2 cut(s)	318, 770
HgaI	GACGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	353
HincII	GTYRAC	2 cut(s)	526, 589
HindII	GTYRAC	2 cut(s)	526, 589
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	2 cut(s)	123, 257
HpaI	GTTAAC	1 cut(s)	526
HphI	GGTGA	2 cut(s)	180, 529
Hpy166II	GTNNAC	2 cut(s)	526, 589
Hpy188I	TCNGA	5 cut(s)	58, 412, 711, 840, 862
Hpy188III	TCNNGA	4 cut(s)	107, 206, 460, 499
Hpy8I	GTNNAC	2 cut(s)	526, 589
Hpy99I	CGWCG	2 cut(s)	355, 644
HpyAV	CCTTC	5 cut(s)	133, 204, 271, 299, 805
HpyCH4IV	ACGT	2 cut(s)	225, 400
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 378, 767
HpyF3I	CTNAG	2 cut(s)	146, 230
HpySE526I	ACGT	2 cut(s)	225, 400
Hsp92I	GRCGYC	1 cut(s)	353
KflI	GGGWCCC	1 cut(s)	687
KspAI	GTTAAC	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	115, 208, 827
LmnI	GCTCC	2 cut(s)	175, 631
Lsp1109I	GCAGC	3 cut(s)	317, 393, 803
MaeI	CTAG	1 cut(s)	795
MaeII	ACGT	2 cut(s)	225, 400
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	3 cut(s)	117, 210, 829
MboI	GATC	3 cut(s)	115, 208, 827
MflI	RGATCY	1 cut(s)	827
MhlI	GDGCHC	2 cut(s)	636, 855
MluCI	AATT	3 cut(s)	168, 278, 620
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	307
MseI	TTAA	3 cut(s)	525, 726, 818
MspR9I	CCNGG	1 cut(s)	530
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	151, 378, 767
NdeII	GATC	3 cut(s)	115, 208, 827
NlaIV	GGNNCC	4 cut(s)	177, 688, 689, 829
NmeAIII	GCCGAG	1 cut(s)	294
NspV	TTCGAA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	2 cut(s)	492, 648
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	307, 383, 772, 793
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PpuMI	RGGWCCY	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	636
Psp1406I	AACGTT	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	4 cut(s)	177, 688, 689, 829
PspPI	GGNCC	4 cut(s)	317, 415, 687, 768
PspPPI	RGGWCCY	1 cut(s)	687
PstNI	CAGNNNCTG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	827
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SacI	GAGCTC	1 cut(s)	636
SalI	GTCGAC	1 cut(s)	587
SaqAI	TTAA	3 cut(s)	525, 726, 818
SatI	GCNGC	4 cut(s)	306, 382, 771, 792
Sau3AI	GATC	3 cut(s)	115, 208, 827
Sau96I	GGNCC	4 cut(s)	317, 415, 687, 768
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	636, 855
SfcI	CTRYAG	3 cut(s)	300, 601, 865
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	2 cut(s)	415, 687
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	168, 278, 620
SsiI	CCGC	4 cut(s)	329, 336, 761, 771
SspMI	CTAG	1 cut(s)	795
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	1 cut(s)	528
TaiI	ACGT	2 cut(s)	228, 403
TaqI	TCGA	6 cut(s)	255, 292, 350, 516, 576, 588
TasI	AATT	3 cut(s)	168, 278, 620
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	3 cut(s)	525, 726, 818
Tru9I	TTAA	3 cut(s)	525, 726, 818
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	3 cut(s)	305, 381, 791
TspDTI	ATGAA	4 cut(s)	412, 538, 581, 613
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	2 cut(s)	415, 687
XapI	RAATTY	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.