Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0017204

Physical Location & Seq

Genomic Coordinates Reverse (-)

36432462 .. 36433310

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008758

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCCACCAACACTTTCCAATCCGCATACCACAATCACCAATCTCTTGGTCTCAACCACCACTCTACTGCTCATGACATTCCTCCTTCCACCACCACTCTTTTCCTTAAACCCACACACACCACCGTAACCTCCTCCCCTCGCTCTTCTCATCACCACCTTCACTCTCTCGTGATCTCTTCAACCAAAACGTTCTCAGTCTCGCCCACCACCTCATTTTCGACTCCTTCTTCCTCCTCCTCCTCCTCCAAATCCAACACCTTCGACCTTCTACAGCAGCACCTCTCCGCCCAAAACTTCCGCGAAGCCGACGAAGAGACTCGCCGCCTCCTCATCGTCCTCGCAGGCGAGGCAGCCCAAAAGCGAGGATACGTCTTTTTCTCCGAGGTCCAGTTCATCGCCGAAGCCGACCTCAAAGCCATTGACGACCTCTGGAGACAGCACAGCAACAACAGGTTCGGCTACTCCGTCCAGAAGAGGATATTCTTCGAAAAGGTTAACCAGGACTTCACCAACTTCTTCATCAAAGTCGGGTGGATGAAGAAGCTCGACACCGAGGTCGACCAGTACAACTACAGAGCTTTCCCTAACGAATTCATCTGGGAGCTCAACGACGACACACCCGAGGGTCATCTGCCATTGACGAATGCTTTGAGAGGGACCCAGTTGCTGAAATGCGTTCTGAACCATCCAGCATTTAAGAACACCGAAGACGAAGAACGGCTACTCCAAGCGGGCAGGGCCGCCGTTGAAGGTAATAAAGCAGCTAGTGGTGGAGGATTGAAGGGGTTAATGGATGGATCCAAACCTTTGAACAAGAGGGTGCTCAAATCAGACTATAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0019899 GO:0023052 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046906 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0065007 GO:0065009 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUN4

Protein Analysis

283

Amino Acids

31.74

Weight (kDa)

7.92

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUN4	PF05419	82 - 231	1.9e-49	GUN4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0017204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59400
fragaria_vesca	FvH4_4g10790
malus_domestica	MD04G1040300.v1.1
prunus_persica	Prupe.1G193000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406801
rosa_laevigata	RLG00000008758
rosa_multiflora	Rmu_sc0006408.1_g000008
rosa_roxburghii	Rroxscaffold_5G00351580
rosa_rugosa	Rorug04G0073400
rosa_samantha	Rh4AG140700 Rh4CG147600 Rh4DG134700
rosa_wichuraiana	Rw4G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	1 cut(s)	303
AciI	CCGC	6 cut(s)	24, 288, 301, 325, 734, 744
AclI	AACGTT	1 cut(s)	191
AclWI	GGATC	2 cut(s)	795, 808
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	593
AfaI	GTAC	1 cut(s)	569
AgsI	TTSAA	4 cut(s)	183, 752, 784, 814
AjnI	CCWGG	1 cut(s)	501
AloI	GAACNNNNNNTCC	2 cut(s)	711, 743
AluBI	AGCT	5 cut(s)	547, 581, 607, 767, 843
AluI	AGCT	5 cut(s)	547, 581, 607, 767, 843
Alw21I	GWGCWC	2 cut(s)	609, 828
Alw26I	GTCTC	4 cut(s)	56, 205, 311, 430
AlwI	GGATC	2 cut(s)	795, 808
AlwNI	CAGNNNCTG	1 cut(s)	670
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	2 cut(s)	3, 741
ApeKI	GCWGC	3 cut(s)	277, 353, 764
ApoI	RAATTY	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	634, 666
AspS9I	GGNCC	3 cut(s)	388, 660, 741
AsuHPI	GGTGA	3 cut(s)	29, 146, 502
AsuII	TTCGAA	1 cut(s)	489
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	388, 660
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	609
BarI	GAAGNNNNNNTAC	2 cut(s)	708, 740
BauI	CACGAG	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	2 cut(s)	609, 828
BbvI	GCAGC	3 cut(s)	289, 365, 776
BccI	CCATC	2 cut(s)	696, 791
BceAI	ACGGC	2 cut(s)	731, 737
BciT130I	CCWGG	1 cut(s)	503
BciVI	GTATCC	1 cut(s)	362
BcoDI	GTCTC	4 cut(s)	56, 205, 311, 430
BfaI	CTAG	1 cut(s)	768
BfmI	CTRYAG	3 cut(s)	272, 574, 838
BfuI	GTATCC	1 cut(s)	362
BisI	GCNGC	5 cut(s)	278, 325, 354, 744, 765
BlsI	GCNGC	5 cut(s)	279, 326, 355, 745, 766
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	2 cut(s)	388, 660
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	3 cut(s)	388, 660, 741
BmiI	GGNNCC	3 cut(s)	661, 662, 802
BmrFI	CCNGG	1 cut(s)	503
BmrI	ACTGGG	1 cut(s)	658
BmuI	ACTGGG	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	717
BpmI	CTGGAG	1 cut(s)	454
Bpu14I	TTCGAA	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	384, 555, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bse1I	ACTGG	3 cut(s)	391, 565, 664
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	384, 555, 624
BseGI	GGATG	3 cut(s)	543, 688, 802
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	3 cut(s)	391, 565, 664
BseRI	GAGGAG	6 cut(s)	124, 226, 229, 232, 235, 320
BseXI	GCAGC	3 cut(s)	289, 365, 776
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	5, 743
BsiHKAI	GWGCWC	2 cut(s)	609, 828
BsiHKCI	CYCGRG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	673
BsmAI	GTCTC	4 cut(s)	56, 205, 311, 430
BsmFI	GGGAC	1 cut(s)	673
BsmI	GAATGC	1 cut(s)	652
BsnI	GGCC	2 cut(s)	5, 743
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	623
Bsp119I	TTCGAA	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	609, 828
Bsp143I	GATC	2 cut(s)	174, 800
BspACI	CCGC	6 cut(s)	24, 288, 301, 325, 734, 744
BspANI	GGCC	2 cut(s)	5, 743
BspCNI	CTCAG	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	3 cut(s)	661, 662, 802
BspPI	GGATC	2 cut(s)	795, 808
BspQI	GCTCTTC	1 cut(s)	151
BspT104I	TTCGAA	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	3 cut(s)	391, 565, 664
BssECI	CCNNGG	3 cut(s)	384, 555, 624
BssMI	GATC	2 cut(s)	174, 800
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	4 cut(s)	151, 184, 309, 470
BstBI	TTCGAA	1 cut(s)	489
BstC8I	GCNNGC	2 cut(s)	346, 736
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	3 cut(s)	543, 688, 802
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	2 cut(s)	177, 803
BstMAI	GTCTC	4 cut(s)	56, 205, 311, 430
BstMBI	GATC	2 cut(s)	174, 800
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 740
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstSFI	CTRYAG	3 cut(s)	272, 574, 838
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	289, 365, 776
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	800
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	800
BsuI	GTATCC	1 cut(s)	362
BsuRI	GGCC	2 cut(s)	5, 743
BtgZI	GCGATG	1 cut(s)	382
BtsCI	GGATG	3 cut(s)	543, 688, 802
Cac8I	GCNNGC	2 cut(s)	346, 736
CaiI	CAGNNNCTG	1 cut(s)	670
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	3 cut(s)	388, 660, 741
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	1 cut(s)	74
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	2 cut(s)	176, 802
DpnII	GATC	2 cut(s)	174, 800
DrdI	GACNNNNNNGTC	1 cut(s)	557
DseDI	GACNNNNNNGTC	1 cut(s)	557
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	151, 184, 309, 470
EarI	CTCTTC	4 cut(s)	151, 184, 309, 470
EciI	GGCGGA	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	607
Eco24I	GRGCYC	1 cut(s)	609
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	388, 660
Eco53kI	GAGCTC	1 cut(s)	607
Eco88I	CYCGRG	1 cut(s)	623
EcoICRI	GAGCTC	1 cut(s)	607
EcoO109I	RGGNCCY	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	609
FaeI	CATG	1 cut(s)	77
FaiI	YATR	3 cut(s)	28, 75, 840
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	727
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	278, 325, 354, 744, 765
FokI	GGATG	3 cut(s)	550, 675, 809
FriOI	GRGCYC	1 cut(s)	609
Fsp4HI	GCNGC	5 cut(s)	278, 325, 354, 744, 765
FspBI	CTAG	1 cut(s)	768
GluI	GCNGC	5 cut(s)	278, 325, 354, 744, 765
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	5, 743
Hin1II	CATG	1 cut(s)	77
HincII	GTYRAC	2 cut(s)	499, 562
HindII	GTYRAC	2 cut(s)	499, 562
HinfI	GANTC	2 cut(s)	223, 319
HpaI	GTTAAC	1 cut(s)	499
HphI	GGTGA	3 cut(s)	29, 146, 502
Hpy166II	GTNNAC	2 cut(s)	499, 562
Hpy188I	TCNGA	3 cut(s)	385, 684, 835
Hpy188III	TCNNGA	4 cut(s)	74, 172, 433, 472
Hpy8I	GTNNAC	2 cut(s)	499, 562
Hpy99I	CGWCG	2 cut(s)	314, 617
HpyAV	CCTTC	7 cut(s)	96, 170, 237, 271, 278, 746, 778
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	191, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 740
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	2 cut(s)	191, 372
Hsp92II	CATG	1 cut(s)	77
KflI	GGGWCCC	1 cut(s)	660
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	174, 800
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	3 cut(s)	289, 365, 776
MaeI	CTAG	1 cut(s)	768
MaeII	ACGT	2 cut(s)	191, 372
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	2 cut(s)	176, 802
MboI	GATC	2 cut(s)	174, 800
MflI	RGATCY	1 cut(s)	800
MhlI	GDGCHC	2 cut(s)	609, 828
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	593
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	217, 313
MmeI	TCCRAC	1 cut(s)	279
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	108, 498, 699, 791
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	503
Mva1269I	GAATGC	1 cut(s)	652
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	350, 740
NdeII	GATC	2 cut(s)	174, 800
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	3 cut(s)	661, 662, 802
NspV	TTCGAA	1 cut(s)	489
PagI	TCATGA	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	3 cut(s)	405, 465, 621
PctI	GAATGC	1 cut(s)	652
PkrI	GCNGC	5 cut(s)	279, 326, 355, 745, 766
PleI	GAGTC	2 cut(s)	217, 313
PpsI	GAGTC	2 cut(s)	217, 313
PpuMI	RGGWCCY	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	609
Psp1406I	AACGTT	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	661, 662, 802
PspPI	GGNCC	3 cut(s)	388, 660, 741
PspPPI	RGGWCCY	1 cut(s)	660
PstNI	CAGNNNCTG	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	800
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SacI	GAGCTC	1 cut(s)	609
SalI	GTCGAC	1 cut(s)	560
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	4 cut(s)	108, 498, 699, 791
SatI	GCNGC	5 cut(s)	278, 325, 354, 744, 765
Sau3AI	GATC	2 cut(s)	174, 800
Sau96I	GGNCC	3 cut(s)	388, 660, 741
SchI	GAGTC	2 cut(s)	217, 313
ScrFI	CCNGG	1 cut(s)	503
SduI	GDGCHC	2 cut(s)	609, 828
SfcI	CTRYAG	3 cut(s)	272, 574, 838
SfuI	TTCGAA	1 cut(s)	489
SinI	GGWCC	2 cut(s)	388, 660
Sse9I	AATT	1 cut(s)	593
SsiI	CCGC	6 cut(s)	24, 288, 301, 325, 734, 744
SspMI	CTAG	1 cut(s)	768
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	501
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	194, 375
TaqI	TCGA	5 cut(s)	221, 264, 489, 549, 561
TasI	AATT	1 cut(s)	593
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	2 cut(s)	327, 746
Tru1I	TTAA	4 cut(s)	108, 498, 699, 791
Tru9I	TTAA	4 cut(s)	108, 498, 699, 791
TseI	GCWGC	3 cut(s)	277, 353, 764
TspDTI	ATGAA	4 cut(s)	385, 511, 554, 586
TspGWI	ACGGA	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	388, 660
XapI	RAATTY	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.