Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0017204

Physical Location & Seq

Genomic Coordinates Reverse (-)

14498708 .. 14499556

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCCACCAACACTTTCCACAATCACCACTACTCTCTTGGTCTCAACCGCCACCACTCTACCACATATGACAACATTCCTCCTCCTTCCGCCACCACTTTCTTCCTTAAACCCACAAACACCACCTTAACCTCCTCCCCTCTCTCTTCCCATCACCACCTTCACTCTCTCGCCATCTCTTCCACCAAAACCTTCTCAGTTTCTCCCACTACCTCGTTTTCCACTCCTTCTTCTTCTTCTTCCTCCAAGTTCGACATCCTACAGCAGCACCTCTCCGCCCAAAACTTCCGCGAAGCCGACGAAGAGACTCGCCGCCTCCTCATCGTCCTCGCCGGCGAGGCTGCCCAAAAGCGAGGCTACGTCTTCTTCTCCGAGGTCCAGTTCATCCCCGAAGCCGACCTCAAAGCCATTGACGACCTGTGGAGACAGCACAGCAACAACAGGTTCGGCTACTCCGTCCAGAAGAGGATATTCTTCGACAAGGTCAACCAGGACTTCACCAACTTCTTCATCAAAGTCGGGTGGATGAAGAAGCTCGACACCGAGGTCGACCAGTACAACTACAGAGCTTTTCCTAACGAGTTCATATGGGAGCTCAACGACGACACACCCGAGGGTCATCTGCCATTGACTAATGCTTTGAGAGGCACCCAGTTGCTCAAATGCGTTCTAAACCATCCAGCCTTCAAGAACACCCCAGAAGAAGAAGAAGAACGACTACTCAAAGCGGCCATTATTGAAGGTAACAAAGCAGCAGCTAGTAGTATTGGTGGAGGAGGGTTGAAAGGGTTAATAGATGGATCCAAACCTCTCAACAAGAGGGTGCTGAAATCAGACTATAGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0019899 GO:0023052 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0046906 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051716 GO:0065007 GO:0065009 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUN4

Protein Analysis

283

Amino Acids

31.82

Weight (kDa)

7.25

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUN4	PF05419	78 - 227	6.3e-50	GUN4-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59400
fragaria_vesca	FvH4_4g10790
malus_domestica	MD04G1040300.v1.1
prunus_persica	Prupe.1G193000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0406801
rosa_laevigata	RLG00000008758
rosa_multiflora	Rmu_sc0006408.1_g000008
rosa_roxburghii	Rroxscaffold_5G00351580
rosa_rugosa	Rorug04G0073400
rosa_samantha	Rh4AG140700 Rh4CG147600 Rh4DG134700
rosa_wichuraiana	Rw4G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
AccB1I	GGYRCC	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	549
AccII	CGCG	1 cut(s)	291
AciI	CCGC	6 cut(s)	49, 90, 276, 289, 313, 728
AclWI	GGATC	2 cut(s)	795, 808
AcoI	YGGCCR	2 cut(s)	3, 729
AfaI	GTAC	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	688, 740, 784
AjnI	CCWGG	1 cut(s)	489
AluBI	AGCT	5 cut(s)	535, 569, 595, 758, 843
AluI	AGCT	5 cut(s)	535, 569, 595, 758, 843
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	3 cut(s)	47, 299, 418
AlwI	GGATC	2 cut(s)	795, 808
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	3, 729
ApeKI	GCWGC	4 cut(s)	265, 341, 752, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	622, 654
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	3 cut(s)	17, 146, 490
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	800
BanI	GGYRCC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	597
BarI	GAAGNNNNNNTAC	2 cut(s)	702, 734
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	597
BbvI	GCAGC	4 cut(s)	277, 328, 764, 767
BccI	CCATC	4 cut(s)	159, 182, 684, 791
BciT130I	CCWGG	1 cut(s)	491
BcoDI	GTCTC	3 cut(s)	47, 299, 418
BfaI	CTAG	1 cut(s)	759
BfmI	CTRYAG	3 cut(s)	260, 562, 838
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	6 cut(s)	266, 313, 342, 729, 753, 756
BlsI	GCNGC	6 cut(s)	267, 314, 343, 730, 754, 757
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	2 cut(s)	649, 802
BmrFI	CCNGG	1 cut(s)	491
BmrI	ACTGGG	1 cut(s)	646
BmuI	ACTGGG	1 cut(s)	646
BpiI	GAAGAC	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	372, 543, 612
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	3 cut(s)	379, 553, 652
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	3 cut(s)	372, 543, 612
BseGI	GGATG	4 cut(s)	255, 384, 531, 676
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	3 cut(s)	379, 553, 652
BseRI	GAGGAG	4 cut(s)	72, 124, 308, 789
BseXI	GCAGC	4 cut(s)	277, 328, 764, 767
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	5, 731
BshNI	GGYRCC	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	1 cut(s)	333
BsmAI	GTCTC	3 cut(s)	47, 299, 418
BsnI	GGCC	2 cut(s)	5, 731
Bso31I	GGTCTC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	1 cut(s)	800
BspACI	CCGC	6 cut(s)	49, 90, 276, 289, 313, 728
BspANI	GGCC	2 cut(s)	5, 731
BspCNI	CTCAG	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	649, 802
BspPI	GGATC	2 cut(s)	795, 808
BspT107I	GGYRCC	1 cut(s)	647
BspTNI	GGTCTC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	379, 553, 652
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	372, 543, 612
BssMI	GATC	1 cut(s)	800
Bst2UI	CCWGG	1 cut(s)	491
Bst6I	CTCTTC	4 cut(s)	151, 184, 297, 458
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	4 cut(s)	255, 384, 531, 676
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	803
BstMAI	GTCTC	3 cut(s)	47, 299, 418
BstMBI	GATC	1 cut(s)	800
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	3 cut(s)	260, 562, 838
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	4 cut(s)	277, 328, 764, 767
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	800
BstYI	RGATCY	1 cut(s)	800
BsuRI	GGCC	2 cut(s)	5, 731
BtsCI	GGATG	4 cut(s)	255, 384, 531, 676
Cac8I	GCNNGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	556
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	1 cut(s)	802
DpnII	GATC	1 cut(s)	800
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
EaeI	YGGCCR	2 cut(s)	3, 729
Eam1104I	CTCTTC	4 cut(s)	151, 184, 297, 458
EarI	CTCTTC	4 cut(s)	151, 184, 297, 458
EciI	GGCGGA	2 cut(s)	79, 265
Ecl136II	GAGCTC	1 cut(s)	595
Eco24I	GRGCYC	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	595
Eco88I	CYCGRG	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	597
FaiI	YATR	5 cut(s)	67, 69, 587, 589, 840
FauNDI	CATATG	2 cut(s)	67, 587
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	6 cut(s)	266, 313, 342, 729, 753, 756
FokI	GGATG	4 cut(s)	242, 371, 538, 663
FriOI	GRGCYC	1 cut(s)	597
Fsp4HI	GCNGC	6 cut(s)	266, 313, 342, 729, 753, 756
FspBI	CTAG	1 cut(s)	759
GluI	GCNGC	6 cut(s)	266, 313, 342, 729, 753, 756
HaeIII	GGCC	2 cut(s)	5, 731
HapII	CCGG	1 cut(s)	333
HincII	GTYRAC	2 cut(s)	487, 550
HindII	GTYRAC	2 cut(s)	487, 550
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	3 cut(s)	17, 146, 490
Hpy166II	GTNNAC	2 cut(s)	487, 550
Hpy188I	TCNGA	2 cut(s)	373, 835
Hpy188III	TCNNGA	2 cut(s)	460, 688
Hpy8I	GTNNAC	2 cut(s)	487, 550
Hpy99I	CGWCG	2 cut(s)	302, 605
HpyAV	CCTTC	6 cut(s)	96, 170, 202, 237, 694, 734
HpyCH4IV	ACGT	1 cut(s)	360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	360
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	800
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	4 cut(s)	277, 328, 764, 767
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	1 cut(s)	802
MboI	GATC	1 cut(s)	800
MflI	RGATCY	1 cut(s)	800
MhlI	GDGCHC	1 cut(s)	597
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	301
Mox20I	TGGCCA	1 cut(s)	5
MreI	CGCCGGCG	1 cut(s)	332
MroNI	GCCGGC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	108, 128, 791, 847
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	491
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	338
NaeI	GCCGGC	1 cut(s)	334
NdeI	CATATG	2 cut(s)	67, 587
NdeII	GATC	1 cut(s)	800
NgoMIV	GCCGGC	1 cut(s)	332
NlaIV	GGNNCC	2 cut(s)	649, 802
PcsI	WCGNNNNNNNCGW	2 cut(s)	453, 609
PdiI	GCCGGC	1 cut(s)	334
PflFI	GACNNNGTC	1 cut(s)	482
PkrI	GCNGC	6 cut(s)	267, 314, 343, 730, 754, 757
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	649, 802
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	800
PsyI	GACNNNGTC	1 cut(s)	482
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
SacI	GAGCTC	1 cut(s)	597
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	4 cut(s)	108, 128, 791, 847
SatI	GCNGC	6 cut(s)	266, 313, 342, 729, 753, 756
Sau3AI	GATC	1 cut(s)	800
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	597
SfcI	CTRYAG	3 cut(s)	260, 562, 838
SgrAI	CRCCGGYG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	376
SsiI	CCGC	6 cut(s)	49, 90, 276, 289, 313, 728
SspMI	CTAG	1 cut(s)	759
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	489
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	4 cut(s)	252, 477, 537, 549
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	2 cut(s)	315, 731
Tru1I	TTAA	4 cut(s)	108, 128, 791, 847
Tru9I	TTAA	4 cut(s)	108, 128, 791, 847
TseI	GCWGC	4 cut(s)	265, 341, 752, 755
TspDTI	ATGAA	4 cut(s)	373, 499, 542, 574
TspGWI	ACGGA	1 cut(s)	445
Tth111I	GACNNNGTC	1 cut(s)	482
VpaK11BI	GGWCC	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.