Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009445

Physical Location & Seq

Genomic Coordinates Reverse (-)

22312258 .. 22314427

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCGTCGCTGCGTAATGCTATTCCACGGCCTGCTCATAAGGAGCGATCTCAACCGGAAGCGAGGAAGAGGTTTGGCATCCTCGAGAAGCATAAGGATTATATTATCCGAGCTAATGCTTATCACAAAAAGCAGGAAACTTTAAAGATACTTAGGCAGAAGGCTGCATTCAAGAATCCAGATGAATTCAACTTTAAGATGATTAATAGTAAAACAGTTGATGGACGTCATAGACCAAAAGATGAGGTAAATAAATACTCTGCGGAAGAGCTTATGATTATGAAGACTCAAGATATTGGATATGTGTTCCAAAAATGGCAGAGTGAGAAAAACAAAATTGACAAGCTGACTGCATCGCTGCAATGTACTGGGGATCAGTCAAGCCGTAGACATGTTTACTATGCAGAAGACAGAGAGGAGGCTAGAGAACTGGAGGTACAAGGTAGAAGCAAAAGTGATATCTCTACAGTAGAGATTCCGAAAGATATTAAAAAGAAAATGGATAGGTCCTATAGAGACCTCGAGGGGCGGAAGAGCAGGGCTAAAGATTTGGAGAAGTTATACACGGATATGTCAATGCAGAAGGAGTTACAGAAAAAGGGTCGCAAACGGAAGCTGCGTGATGACGAGCTGCTCAATCCAAATGGTAAAGCGGTATACAAATGGCGCGCCGATAGAAAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Utp11

Protein Analysis

228

Amino Acids

27.15

Weight (kDa)

9.94

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp11	PF03998	11 - 228	1.5e-56	Utp11 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60360
fragaria_vesca	FvH4_3g21660
malus_domestica	MD11G1228500.v1.1 MD11G1228700.v1.1 MD15G1425000.v1.1
prunus_persica	Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.8G106900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037141
rosa_laevigata	RLG00000033753
rosa_multiflora	Rmu_ssc0000448.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043840
rosa_rugosa	Rorug05G0161000 Rorug05G0161100
rosa_samantha	Rh5AG252700 Rh5BG254600 Rh5CG287100 Rh5DG263000 Rh6CG205000
rosa_wichuraiana	Rw5G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	229
AbsI	CCTCGAGG	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	388, 657
AccII	CGCG	1 cut(s)	669
AciI	CCGC	3 cut(s)	263, 529, 653
AclWI	GGATC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	226
AfaI	GTAC	2 cut(s)	367, 438
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	2 cut(s)	172, 190
AluBI	AGCT	5 cut(s)	113, 271, 346, 616, 631
AluI	AGCT	5 cut(s)	113, 271, 346, 616, 631
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	381
Ama87I	CYCGRG	2 cut(s)	83, 521
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	5 cut(s)	10, 164, 358, 616, 631
ApoI	RAATTY	1 cut(s)	185
AscI	GGCGCGCC	1 cut(s)	667
AseI	ATTAAT	1 cut(s)	204
AspLEI	GCGC	2 cut(s)	669, 671
AspS9I	GGNCC	1 cut(s)	507
AvaI	CYCGRG	2 cut(s)	83, 521
AvaII	GGWCC	1 cut(s)	507
BbsI	GAAGAC	2 cut(s)	290, 414
BbvI	GCAGC	4 cut(s)	151, 345, 603, 618
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	2 cut(s)	44, 369
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	2 cut(s)	465, 511
BisI	GCNGC	5 cut(s)	11, 165, 359, 617, 632
BlsI	GCNGC	5 cut(s)	12, 166, 360, 618, 633
Bme18I	GGWCC	1 cut(s)	507
BmeT110I	CYCGRG	2 cut(s)	83, 521
BmgT120I	GGNCC	1 cut(s)	507
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	87, 362
BmuI	ACTGGG	1 cut(s)	378
BpiI	GAAGAC	2 cut(s)	290, 414
BpmI	CTGGAG	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	373, 435
Bse3DI	GCAATG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	78
BseMI	GCAATG	1 cut(s)	368
BseNI	ACTGG	2 cut(s)	373, 435
BsePI	GCGCGC	1 cut(s)	667
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	4 cut(s)	151, 345, 603, 618
Bsh1236I	CGCG	1 cut(s)	669
BshFI	GGCC	1 cut(s)	31
BsiHKCI	CYCGRG	2 cut(s)	83, 521
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	510
BsoBI	CYCGRG	2 cut(s)	83, 521
Bsp143I	GATC	2 cut(s)	47, 373
BspACI	CCGC	3 cut(s)	263, 529, 653
BspANI	GGCC	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	669
BspPI	GGATC	1 cut(s)	381
BspQI	GCTCTTC	2 cut(s)	261, 527
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	373, 435
BssECI	CCNNGG	1 cut(s)	26
BssHII	GCGCGC	1 cut(s)	667
BssMI	GATC	2 cut(s)	47, 373
BssNAI	GTATAC	1 cut(s)	658
BssNI	GRCGYC	1 cut(s)	226
Bst1107I	GTATAC	1 cut(s)	658
Bst4CI	ACNGT	2 cut(s)	217, 469
Bst6I	CTCTTC	3 cut(s)	62, 261, 527
BstACI	GRCGYC	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	33, 669
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	669
BstHHI	GCGC	2 cut(s)	669, 671
BstKTI	GATC	2 cut(s)	50, 376
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	2 cut(s)	47, 373
BstNSI	RCATGY	1 cut(s)	395
BstSFI	CTRYAG	2 cut(s)	465, 511
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	4 cut(s)	151, 345, 603, 618
BstV2I	GAAGAC	2 cut(s)	290, 414
BstZ17I	GTATAC	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	33, 669
CfoI	GCGC	2 cut(s)	669, 671
Cfr13I	GGNCC	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	366, 437
CviAII	CATG	1 cut(s)	392
CviQI	GTAC	2 cut(s)	366, 437
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	2 cut(s)	49, 375
DpnII	GATC	2 cut(s)	47, 373
DraI	TTTAAA	1 cut(s)	144
Eam1104I	CTCTTC	3 cut(s)	62, 261, 527
EarI	CTCTTC	3 cut(s)	62, 261, 527
EciI	GGCGGA	1 cut(s)	544
Eco31I	GGTCTC	1 cut(s)	510
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	507
Eco88I	CYCGRG	2 cut(s)	83, 521
EcoO109I	RGGNCCY	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	460
FaeI	CATG	1 cut(s)	395
FatI	CATG	1 cut(s)	391
FblI	GTMKAC	2 cut(s)	388, 657
Fnu4HI	GCNGC	5 cut(s)	11, 165, 359, 617, 632
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	5 cut(s)	11, 165, 359, 617, 632
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	2 cut(s)	668, 670
GluI	GCNGC	5 cut(s)	11, 165, 359, 617, 632
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	2 cut(s)	669, 671
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	2 cut(s)	667, 669
HinP1I	GCGC	2 cut(s)	667, 669
HinfI	GANTC	3 cut(s)	175, 286, 475
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	3 cut(s)	389, 397, 658
Hpy188I	TCNGA	2 cut(s)	110, 480
Hpy188III	TCNNGA	4 cut(s)	85, 172, 179, 290
Hpy8I	GTNNAC	3 cut(s)	389, 397, 658
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	154, 577
HpyCH4III	ACNGT	2 cut(s)	217, 469
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	5 cut(s)	167, 353, 361, 404, 580
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	2 cut(s)	667, 669
Kzo9I	GATC	2 cut(s)	47, 373
LguI	GCTCTTC	2 cut(s)	261, 527
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	7 cut(s)	45, 69, 119, 192, 354, 416, 523
Lsp1109I	GCAGC	4 cut(s)	151, 345, 603, 618
LweI	GCATC	2 cut(s)	87, 362
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	588
MalI	GATC	2 cut(s)	49, 375
MboI	GATC	2 cut(s)	47, 373
MboII	GAAGA	5 cut(s)	79, 278, 295, 419, 544
MluCI	AATT	2 cut(s)	185, 336
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	9 cut(s)	57, 63, 92, 238, 409, 412, 427, 517, 530
MseI	TTAA	4 cut(s)	143, 195, 204, 489
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	167
MvnI	CGCG	1 cut(s)	669
NdeII	GATC	2 cut(s)	47, 373
NlaIII	CATG	1 cut(s)	395
NspI	RCATGY	1 cut(s)	395
PaeR7I	CTCGAG	2 cut(s)	83, 521
PalAI	GGCGCGCC	1 cut(s)	667
PauI	GCGCGC	1 cut(s)	667
PciI	ACATGT	1 cut(s)	391
PciSI	GCTCTTC	2 cut(s)	261, 527
PcsI	WCGNNNNNNNCGW	1 cut(s)	616
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	175, 475
PkrI	GCNGC	5 cut(s)	12, 166, 360, 618, 633
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	507
PscI	ACATGT	1 cut(s)	391
PshBI	ATTAAT	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	507
PspPPI	RGGWCCY	1 cut(s)	507
PspXI	VCTCGAGB	1 cut(s)	521
PsrI	GAACNNNNNNTAC	2 cut(s)	420, 452
PteI	GCGCGC	1 cut(s)	667
RsaI	GTAC	2 cut(s)	367, 438
RsaNI	GTAC	2 cut(s)	366, 437
RseI	CAYNNNNRTG	1 cut(s)	569
SapI	GCTCTTC	2 cut(s)	261, 527
SaqAI	TTAA	4 cut(s)	143, 195, 204, 489
SatI	GCNGC	5 cut(s)	11, 165, 359, 617, 632
Sau3AI	GATC	2 cut(s)	47, 373
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	1 cut(s)	280
SfaNI	GCATC	2 cut(s)	87, 362
SfcI	CTRYAG	2 cut(s)	465, 511
Sfr274I	CTCGAG	2 cut(s)	83, 521
SgsI	GGCGCGCC	1 cut(s)	667
SinI	GGWCC	1 cut(s)	507
SlaI	CTCGAG	2 cut(s)	83, 521
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	3 cut(s)	83, 288, 521
SmoI	CTYRAG	3 cut(s)	83, 288, 521
Sse9I	AATT	2 cut(s)	185, 336
SsiI	CCGC	3 cut(s)	263, 529, 653
SspMI	CTAG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	217, 469
TaiI	ACGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	84, 522
TasI	AATT	2 cut(s)	185, 336
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	175, 475
Tru1I	TTAA	4 cut(s)	143, 195, 204, 489
Tru9I	TTAA	4 cut(s)	143, 195, 204, 489
TseI	GCWGC	5 cut(s)	10, 164, 358, 616, 631
TspDTI	ATGAA	2 cut(s)	198, 296
TspGWI	ACGGA	2 cut(s)	581, 625
VpaK11BI	GGWCC	1 cut(s)	507
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	395
XhoI	CTCGAG	2 cut(s)	83, 521
XmiI	GTMKAC	2 cut(s)	388, 657
XspI	CTAG	1 cut(s)	423
ZraI	GACGTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.