Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009445

Physical Location & Seq

Genomic Coordinates Reverse (-)

31484514 .. 31488729

Gene Structure 4216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG287100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCGTCTCTAAGGAATGCTGTTAGCAGACGTGCTCACAAGGAGCGATCTCAACCGGAATCGAGGAAAAAATTTGGGTTTCTTGAAAAGCACAAGGACTATGTTCAGCGTGCTAAGGTGTACCACAAAAAGGAGGAGACTTTACAGATACTGAAGCAGAAAGCAAGATTTCGAAACCCAGATGAGTTTTACTTCAAGATGATTAACACCCGAACTGTTGATGGAGTCCATAAAATAGAGGGTCAGGCTAACAAGTACACTCCAGAAGAGCTCTTGCTTATGAAGACCCAGGATATTGGATATGTACTGCAGAAAGTACAGAGTGAGAAAAAGAAAATTGAAAAGATGACTGCAACTCTGCATTCACTTGATAATCGGCCTTCAAGCAGACACGTATACTTTGCTGAAGACAGGGAAGAGGCTAAAGAGCTTCAGTCACGTAGTTCAAGAGGGGAAATATTGCTCGGTTCTGAGAATATTCCAGATCGTATTAAAAGGTATAAGCAAAACTTTTGTACCTTTTTAATGGACACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Utp11

Protein Analysis

179

Amino Acids

21.27

Weight (kDa)

9.73

Isoelectric Point (pI)

77.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp11	PF03998	10 - 148	3.2e-52	Utp11 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60360
fragaria_vesca	FvH4_3g21660
malus_domestica	MD11G1228500.v1.1 MD11G1228700.v1.1 MD15G1425000.v1.1
prunus_persica	Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.8G106900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037141
rosa_laevigata	RLG00000033753
rosa_multiflora	Rmu_ssc0000448.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043840
rosa_rugosa	Rorug05G0161000 Rorug05G0161100
rosa_samantha	Rh5AG252700 Rh5BG254600 Rh5CG287100 Rh5DG263000 Rh6CG205000
rosa_wichuraiana	Rw5G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	3 cut(s)	173, 416, 426
AfaI	GTAC	5 cut(s)	122, 257, 306, 318, 517
AfiI	CCNNNNNNNGG	1 cut(s)	130
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	5 cut(s)	86, 196, 341, 384, 447
AjiI	CACGTC	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	2 cut(s)	271, 430
AluI	AGCT	2 cut(s)	271, 430
Alw21I	GWGCWC	2 cut(s)	37, 273
Alw26I	GTCTC	2 cut(s)	12, 131
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	172
BaeI	ACNNNNGTAYC	2 cut(s)	499, 532
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	2 cut(s)	290, 414
Bbv12I	GWGCWC	2 cut(s)	37, 273
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	12, 131
BfmI	CTRYAG	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	290
BmgBI	CACGTC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	290
BpiI	GAAGAC	2 cut(s)	290, 414
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	172
BsaAI	YACGTR	2 cut(s)	394, 440
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	379
BsiHKAI	GWGCWC	2 cut(s)	37, 273
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	2 cut(s)	12, 131
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	2 cut(s)	22, 361
BsnI	GGCC	1 cut(s)	379
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	37, 273
Bsp143I	GATC	2 cut(s)	47, 484
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	463
BspMAI	CTGCAG	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	47, 484
BssNAI	GTATAC	1 cut(s)	397
Bst1107I	GTATAC	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	261, 411
BstBAI	YACGTR	2 cut(s)	394, 440
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	11, 114, 471
BstKTI	GATC	2 cut(s)	50, 487
BstMAI	GTCTC	2 cut(s)	12, 131
BstMBI	GATC	2 cut(s)	47, 484
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	308
BstV2I	GAAGAC	2 cut(s)	290, 414
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstZ17I	GTATAC	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	379
BtrI	CACGTC	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	1 cut(s)	151
Csp6I	GTAC	5 cut(s)	121, 256, 305, 317, 516
CviJI	RGCY	5 cut(s)	248, 271, 379, 422, 430
CviKI_1	RGCY	5 cut(s)	248, 271, 379, 422, 430
CviQI	GTAC	5 cut(s)	121, 256, 305, 317, 516
DdeI	CTNAG	3 cut(s)	11, 114, 471
DpnI	GATC	2 cut(s)	49, 486
DpnII	GATC	2 cut(s)	47, 484
Eam1104I	CTCTTC	2 cut(s)	261, 411
EarI	CTCTTC	2 cut(s)	261, 411
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	3 cut(s)	173, 416, 426
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	12
FaiI	YATR	6 cut(s)	102, 231, 281, 303, 397, 501
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FblI	GTMKAC	1 cut(s)	396
FriOI	GRGCYC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	1 cut(s)	56
HinfI	GANTC	2 cut(s)	59, 225
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	3 cut(s)	121, 258, 397
Hpy188I	TCNGA	1 cut(s)	472
Hpy188III	TCNNGA	5 cut(s)	83, 196, 263, 447, 482
Hpy8I	GTNNAC	3 cut(s)	121, 258, 397
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	3 cut(s)	31, 393, 439
HpyCH4V	TGCA	3 cut(s)	310, 353, 361
HpyF3I	CTNAG	3 cut(s)	11, 114, 471
HpySE526I	ACGT	3 cut(s)	31, 393, 439
Kzo9I	GATC	2 cut(s)	47, 484
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	8 cut(s)	69, 192, 230, 275, 276, 302, 397, 495
MaeII	ACGT	3 cut(s)	31, 393, 439
MaeIII	GTNAC	1 cut(s)	435
MalI	GATC	2 cut(s)	49, 486
MboI	GATC	2 cut(s)	47, 484
MboII	GAAGA	4 cut(s)	278, 295, 419, 428
MhlI	GDGCHC	2 cut(s)	37, 273
MluCI	AATT	2 cut(s)	71, 336
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	5 cut(s)	57, 127, 232, 412, 443
MseI	TTAA	3 cut(s)	204, 492, 524
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	290
Mva1269I	GAATGC	2 cut(s)	22, 361
MvaI	CCWGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	47, 484
NmuCI	GTSAC	1 cut(s)	435
NspV	TTCGAA	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	261
PctI	GAATGC	2 cut(s)	22, 361
PfeI	GAWTC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Ppu21I	YACGTR	2 cut(s)	394, 440
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	151
RsaI	GTAC	5 cut(s)	122, 257, 306, 318, 517
RsaNI	GTAC	5 cut(s)	121, 256, 305, 317, 516
SacI	GAGCTC	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	204, 492, 524
Sau3AI	GATC	2 cut(s)	47, 484
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	2 cut(s)	37, 273
SetI	ASST	8 cut(s)	34, 120, 273, 396, 432, 442, 500, 521
SfcI	CTRYAG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	172
Sse9I	AATT	2 cut(s)	71, 336
SspI	AATATT	2 cut(s)	459, 478
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	3 cut(s)	34, 396, 442
TaqI	TCGA	2 cut(s)	62, 172
TasI	AATT	2 cut(s)	71, 336
TatI	WGTACW	3 cut(s)	255, 304, 316
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	3 cut(s)	204, 492, 524
Tru9I	TTAA	3 cut(s)	204, 492, 524
TseFI	GTSAC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	435
TspDTI	ATGAA	1 cut(s)	296
XapI	RAATTY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.