Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004133

Physical Location & Seq

Genomic Coordinates Forward (+)

14986827 .. 14992873

Gene Structure 6047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3921 bp

ATGGCATCTTCCCAAGTGGAAATGGCCTCTGCGCCGTTCGGTTGCGTTTTGAGGGATCACAACCGCCGGGACCGGTGCAGAGAGAGCAATGCCAGAGCCACCATAGGTGCTTTGCAGAAGAATCTCAAGAGTTTGGTGAGGGATCATCTCTGCATTGCAGTGTCTTCAAACTCTGGCTCCAATGACAGCAACTCCGAGAACCAGGCTCGAAACAAGGAGCCAAACAAGGATGAGAACAGCAACAGAAACGGTGAAAGAGAAGATGGTTCGGGTTCGGTTATGAGCCCGAGGCATGCTAGGGTTCTTGATCGATGGGCTTTCGCAAGACAAATAGTGACGAAACCAATTGAGAGGCAGAGGAGAGAAGAGGCAGAGGTGGTTTCTGTGCCGAACTCGGCGCCTTCTTCGACAAGGACGTCGACTTCTGCCAAGGAAGAGACTTTAGCAAGAACAGATAGCTTGGCTGATCTCACCAAAAAAGGCGTGGGGGCTTCGTCTCTGGTTCAAATTTGGGAGAAGAGGCTCCACAAATCAGAATCCCTCAAAACCAATTCCAATGGAAATGTAATATCCGAGACAAGTGGGTCAGATTCTGGAGTTAGCTGCCCTGAGAATGAGAATGAGAATGTAATAGTTCCCAATGCTTCACCGTCCAGAGTTTCTGAAGCAGAAAAGGCAGAGTCCCCTGGTGAGAAAGCAGGGGATACTATTTTCTCTATTGAAAAACCAGGGGACTCTGTTTTGGATATGGAAAAAGCAAGGGAGTCTATAGATGAAAGCTATGATGCCGGCACTGTTACTGACATTGAAGATTCTGATAGGATTGCTGTGAATAGCCGGAATTTAGATTCTAAAGAAAAAGAGAAGGTTCGAGTTGTGGATATTATTAGAAGACTGACTGCACAGGGTCCATCGTCCTCTTTGAGTGAGGAAAATGCTAATGATCATGATCAGCAGTTTAGTAGCGCTCACGGATCGCCATGTAGGGATATCCCCCGTGAGTTGTTACGTGATCGGTGTTCCGGGGTTGATCAAGCAGAGCACAGAGGCCTCTCTCATGTTATAAGCTCACCGCGCATCAGAGGGAGGCAGGCATTTGCCGATTTGCTTATGCAGATGGAGCGTGACAGGCATAGGGAACTTGACACACTGGTAAACCGCAAAACAGTTTCTAAGTTCCCACAGCGAGGCCGAACTCGAATTCAGTCATTACTTAGGCTTCGATTGCTTCAACGTGGTGTGGCATTTGCAGGTGTAGATGTGCCACCACTTCCGCCAAAAGCATCTCGAGTGAACAAACCGGCGCAAGGATCTAGCATCATGCATCTCAGGGAGAAATTTCGTACTAGTGCTGAGCAGGGTTCAGTAGTGCAGGGTGATGCACCTAATCCAAATAGCCCTCATAAGGAGATCATAAAGAACCAGTGTGTCAACGTAGACAAATCCTCCACCTCCAATAAGCCCAGTGAAAGCACTCCTAATCGAGAAGTTAATGTTATGGAACAGCAGAAAGCATCCCCAGTACTGCGTGCTAGTGAAGAAGCGACCCAAAGTTTACACAAATCCTCCACCTCCAATAAGCCCAGTGAAAGCACTTCTAATCGAGAAGTTAATGTTATGGAGCAGCAGAAAACATTCCCAGTACTGCGTGCTAGTGAAGATGTTTGTGAAGAAGCGACCCCCAGTTTACACAAATCCTCCACCTCTAATAAGCCTAGTGAAAGTACTCCTAATCGAGAAGTTACTGTTATGGAGCAGCAGAATGCATCCCCAGTACTGCGTGCTAGTGAAGATGTTTGTGAAGAAGCGACCCAGAGTTTACAGAAATCCTCCACCTCCAATAAGCCTAGTGAAAGCACTCCTAATCGAGAAGTTAATGTTATGGAGCAGCAGAAAACATCCCCAGTACTGCGTGCTAGTGAAGAAGCTATCCCCAGTTTACACAAATCCTCCACCTCCAATAAGCCTAGTGAAAGCCTTCCTAATCGAGAAGTTAATGATATGGAGCAGCAGAAAACATCCCCAGTACTGCGTGCTAGTGAGGATGTTTGTGAAGAAGTGACCCCCAGTTTAGAAGTTTGCTTCCAAGAAACTAGTTCAGTTTCTCAAAGCACCTTGCCAAATGTTAGTGAAGATCTTTGTGAAGTAGCCAGCCCAAGTCCGAAGGTCACCTGGCAAGACACAAGTTCAGTAGCTAGAAACCTTGGTTCGCAAGAAACTGCTGATCCAACCACACCCATAAATGGTTCAAATGAGAATGAGATATGGAAAGGAAAAGGTTCAGTGGATAGAAACCTTGATTCACAAGAAACTGTAGATTCAACAACATCCTTGAATGGTCGCGATGGGGATGATGAAATATGGAAACCCACAAGTTCAGAGGCTAGATACCTTGATTCACAACAAAGTGCAGATACAAGGAAACCCTTGAGTGGTGGGGATGGGACTGGGAATGAAATATGGAAAGGAACAAATTCAGAGGCTAGAAACCTTGACACACATGAAGCTGCAGATACAACCTCATCCTTGAACGGTTGGAATGAAAATGCGATATGGCATGGAACAAGTTTAGAGGCTAGAAACTTTGACTCACAAGTAGATACAACAACATCCTTGGTCGACTGGGATGAGAATGATGATGATTACCAGTATTACGGAGAAACAAATTATGACTGGATCAGTGAGATTTCTCGCCCACGGAGCTATTGGGAAGACATTAGGAAATCATGGTACCAAGAGATGCTTAACTCCAATTCAGAAAAAGGCGAGATACACCAACTCCTTGAAAGAAGAACAGTATCAAATTTTCTTTCTAGTGATTTCCGAGATAGGATAGATAGATTGATGGTATCTCGCATAGAAAGACAAACATGTCATAGTGTCAGTCAAGAAGAAGAAGATGACGAGAGCAGCTATGATAGAATGAATCAAATGGTGTCTTTCTTACAACAACGCAGCAGCGCATCAGGCACTGAAGAAGCAGAAGAAGTGCAAGAACATGTACAGGTACAAGAACAAAACCAAGTCCAAGAACAAGTGCTAGAACACGTGCAAGTCCAAGAACAGGTGCGAGAACATCAAGACCATGAAGACGAGGAGATGACAGAAGAAGAGGAGGAGCAAGAAGAAGCAGAAAAAGTGAAAGAACATGTACAGGTACTAGAACAAAACCAAGTCCAAGAACAAGTGCTAGAACAGGTGCAAGTCCAAGAACAGGTGCAAGAACATCAAGACCACGAGGACGAGGGGATGACAGAAGAAGAGGAAGAAGAAGAAAATGATGACAACTACGATGATGATGAAGAATCAAGGAGCCTAATTAGTGGTCAGTTTCAAGAAGCTAGTGATTATTTTGACCGTGCATCATTGCAGCCTTCACCATCTCACTTTACAACATGGAGTTACCAAGATAATGAAGTTGGGGATGATTCGGACCAAGCCACTTCTCCATCTCCTCACCAACGGTCATCCTTTCCATCTTACTATCCAAATAGTCCACAACTTTCACCATCTCCATCTTACAACGCTAATCACCGGCAGCATTCTCCCTCCCTCAGTCATCCTTCAATGGAAATGGAGCTCTTATACGACTTGAGAGGGCATATGATACAACTCTATCAAGAGATGTCGGAGCTAAGAAAAGAAATAAAGAGCTGCGTAGACATGCAAATGACAGTGCAACAATCCATGAACCAGGATGTTCATTCAGGTCAAGTGGGGATGAAAAGAAACTCTAGTGGGTTAACAAAGAAAGGCAATTGCCGCATTTGCAATGAAGCAAAAATCGACTCACTTTTGTACAGGTGTGGACACATGTGCACCTGTCTCAAGTGTGCTCATGATTTGCAATGGAACAGCGGAAAATGTCCAATCTGTCGAGCTCCGATTGCAGATGTCGTGAAGGCATACATGGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Utp11

Protein Analysis

1306

Amino Acids

146.42

Weight (kDa)

4.88

Isoelectric Point (pI)

59.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	1251 - 1298	3.1e-13	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54650 AT5G54650
fragaria_vesca	FvH4_3g21670 FvH4_3g21670 FvH4_3g21670 FvH4_3g21670 FvH4_3g21670 FvH4_3g21670
malus_domestica	MD03G1213400.v1.1 MD11G1228300.v1.1
prunus_persica	Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1
pyrus_communis	pycom03g16200 pycom11g20090
rosa_chinensis	RchiOBHm_Chr5g0037151
rosa_laevigata	RLG00000033762
rosa_multiflora	Rmu_ssc0000448.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043830
rosa_rugosa	Rorug05G0161100 Rorug05G0161100 Rorug05G0161200
rosa_samantha	Rh5AG252800 Rh5BG254700 Rh5CG287200 Rh5DG263200 Rh6CG204900
rosa_wichuraiana	Rw5G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1064
AarI	CACCTGC	1 cut(s)	1241
AasI	GACNNNNNNGTC	3 cut(s)	415, 583, 2871
AatII	GACGTC	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	1241
Acc65I	GGTACC	1 cut(s)	2730
AccB1I	GGYRCC	2 cut(s)	397, 2730
AccI	GTMKAC	4 cut(s)	419, 1437, 2619, 3660
AccII	CGCG	2 cut(s)	1075, 2343
AciI	CCGC	6 cut(s)	64, 1073, 1159, 1274, 3763, 3858
AclWI	GGATC	6 cut(s)	63, 150, 982, 1318, 2219, 2684
AcsI	RAATTY	6 cut(s)	507, 841, 1200, 1337, 2473, 2803
AcuI	CTGAAG	2 cut(s)	684, 2994
AcvI	CACGTG	1 cut(s)	3049
AcyI	GRCGYC	2 cut(s)	398, 416
AfeI	AGCGCT	1 cut(s)	967
AfiI	CCNNNNNNNGG	7 cut(s)	1187, 1307, 1405, 2243, 2432, 3064, 3214
AflIII	ACRYGT	5 cut(s)	2870, 2998, 3046, 3148, 3813
AgeI	ACCGGT	1 cut(s)	72
AhlI	ACTAGT	2 cut(s)	1346, 2093
AjnI	CCWGG	5 cut(s)	201, 685, 727, 2171, 3693
Alw21I	GWGCWC	5 cut(s)	1044, 3582, 3821, 3838, 3883
Alw26I	GTCTC	4 cut(s)	431, 501, 569, 3830
Alw44I	GTGCAC	1 cut(s)	3817
AlwI	GGATC	6 cut(s)	63, 150, 982, 1318, 2219, 2684
AlwNI	CAGNNNCTG	2 cut(s)	593, 2972
Ama87I	CYCGRG	2 cut(s)	286, 1287
Aor51HI	AGCGCT	1 cut(s)	967
AoxI	GGCC	3 cut(s)	24, 1048, 1189
ApaLI	GTGCAC	1 cut(s)	3817
ApoI	RAATTY	6 cut(s)	507, 841, 1200, 1337, 2473, 2803
AsiGI	ACCGGT	1 cut(s)	72
Asp700I	GAANNNNTTC	4 cut(s)	1634, 1977, 2278, 2473
Asp718I	GGTACC	1 cut(s)	2730
AspLEI	GCGC	6 cut(s)	34, 400, 968, 1077, 1306, 2963
AspS9I	GGNCC	3 cut(s)	70, 908, 3433
AsuC2I	CCSGG	2 cut(s)	68, 1024
AvaI	CYCGRG	2 cut(s)	286, 1287
AvaII	GGWCC	3 cut(s)	70, 908, 3433
BaeGI	GKGCMC	1 cut(s)	3821
BanI	GGYRCC	2 cut(s)	397, 2730
BanII	GRGCYC	3 cut(s)	287, 3582, 3883
BauI	CACGAG	1 cut(s)	3236
BbrPI	CACGTG	1 cut(s)	3049
BbsI	GAAGAC	4 cut(s)	156, 898, 2718, 3096
Bbv12I	GWGCWC	5 cut(s)	1044, 3582, 3821, 3838, 3883
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	5 cut(s)	203, 687, 729, 2173, 3695
BciVI	GTATCC	1 cut(s)	697
BclI	TGATCA	3 cut(s)	943, 949, 1030
BcnI	CCSGG	2 cut(s)	68, 1024
BcoDI	GTCTC	4 cut(s)	431, 501, 569, 3830
BcuI	ACTAGT	2 cut(s)	1346, 2093
BfmI	CTRYAG	3 cut(s)	768, 2313, 2508
BfoI	RGCGCY	2 cut(s)	401, 969
BfuAI	ACCTGC	1 cut(s)	1241
BfuI	GTATCC	1 cut(s)	697
BglII	AGATCT	1 cut(s)	2134
BlpI	GCTNAGC	1 cut(s)	1353
BmcAI	AGTACT	6 cut(s)	1524, 1644, 1726, 1776, 1908, 2028
Bme1390I	CCNGG	7 cut(s)	68, 203, 687, 729, 1024, 2173, 3695
Bme18I	GGWCC	3 cut(s)	70, 908, 3433
BmeT110I	CYCGRG	2 cut(s)	286, 1287
BmgT120I	GGNCC	3 cut(s)	70, 908, 3433
BmiI	GGNNCC	8 cut(s)	71, 178, 219, 399, 524, 909, 2732, 3314
BmrFI	CCNGG	7 cut(s)	68, 203, 687, 729, 1024, 2173, 3695
BpiI	GAAGAC	4 cut(s)	156, 898, 2718, 3096
BpmI	CTGGAG	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	1353
BpuEI	CTTGAG	4 cut(s)	110, 2449, 3613, 3812
BpuMI	CCSGG	2 cut(s)	68, 1024
Bsa29I	ATCGAT	1 cut(s)	310
BsaAI	YACGTR	2 cut(s)	1010, 3049
BsaBI	GATNNNNATC	1 cut(s)	948
BsaHI	GRCGYC	2 cut(s)	398, 416
BsaJI	CCNNGG	8 cut(s)	287, 429, 685, 728, 1023, 2203, 2613, 2696
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	7 cut(s)	1187, 1307, 1405, 2243, 2432, 3064, 3214
Bse118I	RCCGGY	4 cut(s)	72, 788, 1300, 3534
Bse3DI	GCAATG	5 cut(s)	94, 153, 3365, 3778, 3854
Bse8I	GATNNNNATC	1 cut(s)	948
BseBI	CCWGG	5 cut(s)	203, 687, 729, 2173, 3695
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	8 cut(s)	287, 429, 685, 728, 1023, 2203, 2613, 2696
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	7 cut(s)	1187, 1307, 1405, 2243, 2432, 3064, 3214
BseMI	GCAATG	5 cut(s)	94, 153, 3365, 3778, 3854
BseMII	CTCAG	4 cut(s)	600, 1342, 1344, 3568
BseRI	GAGGAG	5 cut(s)	373, 3110, 3128, 3131, 3444
BseSI	GKGCMC	1 cut(s)	3821
BsgI	GTGCAG	4 cut(s)	97, 885, 1391, 2430
Bsh1236I	CGCG	2 cut(s)	1075, 2343
BshFI	GGCC	3 cut(s)	26, 1050, 1191
BshNI	GGYRCC	2 cut(s)	397, 2730
BshTI	ACCGGT	1 cut(s)	72
BshVI	ATCGAT	1 cut(s)	310
BsiHKAI	GWGCWC	5 cut(s)	1044, 3582, 3821, 3838, 3883
BsiHKCI	CYCGRG	2 cut(s)	286, 1287
BsiSI	CCGG	7 cut(s)	67, 73, 789, 838, 1023, 1301, 3535
BslFI	GGGAC	4 cut(s)	83, 667, 746, 2458
BslI	CCNNNNNNNGG	7 cut(s)	1187, 1307, 1405, 2243, 2432, 3064, 3214
BsmAI	GTCTC	4 cut(s)	431, 501, 569, 3830
BsmBI	CGTCTC	1 cut(s)	501
BsmFI	GGGAC	4 cut(s)	83, 667, 746, 2458
BsmI	GAATGC	2 cut(s)	1768, 3541
BsnI	GGCC	3 cut(s)	26, 1050, 1191
BsoBI	CYCGRG	2 cut(s)	286, 1287
Bsp1286I	GDGCHC	6 cut(s)	287, 1044, 3582, 3821, 3838, 3883
Bsp1407I	TGTACA	3 cut(s)	3001, 3151, 3798
Bsp1720I	GCTNAGC	1 cut(s)	1353
Bsp68I	TCGCGA	1 cut(s)	2343
BspACI	CCGC	6 cut(s)	64, 1073, 1159, 1274, 3763, 3858
BspANI	GGCC	3 cut(s)	26, 1050, 1191
BspCNI	CTCAG	4 cut(s)	601, 1341, 1345, 3567
BspDI	ATCGAT	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	1075, 2343
BspHI	TCATGA	2 cut(s)	946, 3838
BspLI	GGNNCC	8 cut(s)	71, 178, 219, 399, 524, 909, 2732, 3314
BspMAI	CTGCAG	1 cut(s)	2512
BspMI	ACCTGC	1 cut(s)	1241
BspPI	GGATC	6 cut(s)	63, 150, 982, 1318, 2219, 2684
BspT107I	GGYRCC	2 cut(s)	397, 2730
BsrDI	GCAATG	5 cut(s)	94, 153, 3365, 3778, 3854
BsrFI	RCCGGY	4 cut(s)	72, 788, 1300, 3534
BsrGI	TGTACA	3 cut(s)	3001, 3151, 3798
BssAI	RCCGGY	4 cut(s)	72, 788, 1300, 3534
BssECI	CCNNGG	8 cut(s)	287, 429, 685, 728, 1023, 2203, 2613, 2696
BssNI	GRCGYC	2 cut(s)	398, 416
BssSI	CACGAG	1 cut(s)	3236
BssT1I	CCWWGG	3 cut(s)	429, 2203, 2613
Bst2BI	CACGAG	1 cut(s)	3236
Bst2UI	CCWGG	5 cut(s)	203, 687, 729, 2173, 3695
Bst6I	CTCTTC	5 cut(s)	360, 429, 512, 3105, 3255
BstACI	GRCGYC	2 cut(s)	398, 416
BstAUI	TGTACA	3 cut(s)	3001, 3151, 3798
BstBAI	YACGTR	2 cut(s)	1010, 3049
BstC8I	GCNNGC	9 cut(s)	294, 790, 1092, 1530, 1650, 1782, 1914, 2034, 2152
BstDEI	CTNAG	7 cut(s)	609, 1173, 1214, 1328, 1353, 3554, 3635
BstDSI	CCRYGG	1 cut(s)	2696
BstEII	GGTNACC	1 cut(s)	2167
BstFNI	CGCG	2 cut(s)	1075, 2343
BstH2I	RGCGCY	2 cut(s)	401, 969
BstHHI	GCGC	6 cut(s)	34, 400, 968, 1077, 1306, 2963
BstMAI	GTCTC	4 cut(s)	431, 501, 569, 3830
BstNI	CCWGG	5 cut(s)	203, 687, 729, 2173, 3695
BstNSI	RCATGY	6 cut(s)	296, 2874, 3002, 3152, 3667, 3817
BstPI	GGTNACC	1 cut(s)	2167
BstSCI	CCNGG	7 cut(s)	66, 201, 685, 727, 1022, 2171, 3693
BstSFI	CTRYAG	3 cut(s)	768, 2313, 2508
BstSLI	GKGCMC	1 cut(s)	3821
BstUI	CGCG	2 cut(s)	1075, 2343
BstV2I	GAAGAC	4 cut(s)	156, 898, 2718, 3096
BstX2I	RGATCY	2 cut(s)	1310, 2134
BstYI	RGATCY	2 cut(s)	1310, 2134
Bsu15I	ATCGAT	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	697
BsuRI	GGCC	3 cut(s)	26, 1050, 1191
BsuTUI	ATCGAT	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	2696
BtgZI	GCGATG	1 cut(s)	2358
BtsI	GCAGTG	1 cut(s)	165
BtuMI	TCGCGA	1 cut(s)	2343
BveI	ACCTGC	1 cut(s)	1241
Cac8I	GCNNGC	9 cut(s)	294, 790, 1092, 1530, 1650, 1782, 1914, 2034, 2152
CaiI	CAGNNNCTG	2 cut(s)	593, 2972
CciI	TCATGA	2 cut(s)	946, 3838
CfoI	GCGC	6 cut(s)	34, 400, 968, 1077, 1306, 2963
Cfr10I	RCCGGY	4 cut(s)	72, 788, 1300, 3534
Cfr13I	GGNCC	3 cut(s)	70, 908, 3433
ClaI	ATCGAT	1 cut(s)	310
CspAI	ACCGGT	1 cut(s)	72
DdeI	CTNAG	7 cut(s)	609, 1173, 1214, 1328, 1353, 3554, 3635
DinI	GGCGCC	1 cut(s)	399
DrdI	GACNNNNNNGTC	3 cut(s)	415, 583, 2871
DseDI	GACNNNNNNGTC	3 cut(s)	415, 583, 2871
Eam1104I	CTCTTC	5 cut(s)	360, 429, 512, 3105, 3255
EarI	CTCTTC	5 cut(s)	360, 429, 512, 3105, 3255
EciI	GGCGGA	1 cut(s)	1263
Ecl136II	GAGCTC	2 cut(s)	3580, 3881
Eco130I	CCWWGG	3 cut(s)	429, 2203, 2613
Eco147I	AGGCCT	1 cut(s)	1050
Eco24I	GRGCYC	3 cut(s)	287, 3582, 3883
Eco32I	GATATC	1 cut(s)	991
Eco47I	GGWCC	3 cut(s)	70, 908, 3433
Eco47III	AGCGCT	1 cut(s)	967
Eco53kI	GAGCTC	2 cut(s)	3580, 3881
Eco57I	CTGAAG	2 cut(s)	684, 2994
Eco72I	CACGTG	1 cut(s)	3049
Eco88I	CYCGRG	2 cut(s)	286, 1287
Eco91I	GGTNACC	1 cut(s)	2167
EcoICRI	GAGCTC	2 cut(s)	3580, 3881
EcoO65I	GGTNACC	1 cut(s)	2167
EcoRI	GAATTC	1 cut(s)	1200
EcoRII	CCWGG	5 cut(s)	201, 685, 727, 2171, 3693
EcoRV	GATATC	1 cut(s)	991
EcoT14I	CCWWGG	3 cut(s)	429, 2203, 2613
EcoT22I	ATGCAT	2 cut(s)	1326, 1768
EcoT38I	GRGCYC	3 cut(s)	287, 3582, 3883
EgeI	GGCGCC	1 cut(s)	399
EheI	GGCGCC	1 cut(s)	399
ErhI	CCWWGG	3 cut(s)	429, 2203, 2613
Esp3I	CGTCTC	1 cut(s)	501
FalI	AAGNNNNNCTT	2 cut(s)	2727, 2759
FaqI	GGGAC	4 cut(s)	83, 667, 746, 2458
FauNDI	CATATG	1 cut(s)	3603
FbaI	TGATCA	3 cut(s)	943, 949, 1030
FblI	GTMKAC	4 cut(s)	419, 1437, 2619, 3660
FriOI	GRGCYC	3 cut(s)	287, 3582, 3883
GlaI	GCGC	6 cut(s)	33, 399, 967, 1076, 1305, 2962
GsuI	CTGGAG	1 cut(s)	615
HaeII	RGCGCY	2 cut(s)	401, 969
HaeIII	GGCC	3 cut(s)	26, 1050, 1191
HapII	CCGG	7 cut(s)	67, 73, 789, 838, 1023, 1301, 3535
HhaI	GCGC	6 cut(s)	34, 400, 968, 1077, 1306, 2963
Hin1I	GRCGYC	2 cut(s)	398, 416
Hin6I	GCGC	6 cut(s)	32, 398, 966, 1075, 1304, 2961
HinP1I	GCGC	6 cut(s)	32, 398, 966, 1075, 1304, 2961
HincII	GTYRAC	4 cut(s)	420, 1432, 2620, 3744
HindII	GTYRAC	4 cut(s)	420, 1432, 2620, 3744
HpaI	GTTAAC	1 cut(s)	3744
HpaII	CCGG	7 cut(s)	67, 73, 789, 838, 1023, 1301, 3535
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	7 cut(s)	411, 859, 1988, 2158, 3384, 3573, 3895
HpyCH4IV	ACGT	5 cut(s)	416, 1009, 1234, 1434, 3048
HpyF3I	CTNAG	7 cut(s)	609, 1173, 1214, 1328, 1353, 3554, 3635
HpySE526I	ACGT	5 cut(s)	416, 1009, 1234, 1434, 3048
Hsp92I	GRCGYC	2 cut(s)	398, 416
HspAI	GCGC	6 cut(s)	32, 398, 966, 1075, 1304, 2961
KasI	GGCGCC	1 cut(s)	397
KpnI	GGTACC	1 cut(s)	2734
KroI	GCCGGC	1 cut(s)	788
KroNI	GCCGGC	1 cut(s)	790
Ksp22I	TGATCA	3 cut(s)	943, 949, 1030
KspAI	GTTAAC	1 cut(s)	3744
MaeII	ACGT	5 cut(s)	416, 1009, 1234, 1434, 3048
MaeIII	GTNAC	8 cut(s)	334, 796, 1005, 1124, 1741, 2059, 2167, 3401
MfeI	CAATTG	2 cut(s)	345, 3757
MflI	RGATCY	2 cut(s)	1310, 2134
MhlI	GDGCHC	6 cut(s)	287, 1044, 3582, 3821, 3838, 3883
Mly113I	GGCGCC	1 cut(s)	398
MlyI	GAGTC	5 cut(s)	689, 728, 773, 2582, 3782
MmeI	TCCRAC	3 cut(s)	2252, 2516, 3609
Mph1103I	ATGCAT	2 cut(s)	1326, 1768
MroNI	GCCGGC	1 cut(s)	788
MroXI	GAANNNNTTC	4 cut(s)	1634, 1977, 2278, 2473
MseI	TTAA	7 cut(s)	1491, 1611, 1875, 1995, 2745, 3743, 3919
MslI	CAYNNNNRTG	2 cut(s)	158, 3668
MspA1I	CMGCKG	1 cut(s)	3858
MspI	CCGG	7 cut(s)	67, 73, 789, 838, 1023, 1301, 3535
MspR9I	CCNGG	7 cut(s)	68, 203, 687, 729, 1024, 2173, 3695
MunI	CAATTG	2 cut(s)	345, 3757
Mva1269I	GAATGC	2 cut(s)	1768, 3541
MvaI	CCWGG	5 cut(s)	203, 687, 729, 2173, 3695
MvnI	CGCG	2 cut(s)	1075, 2343
NaeI	GCCGGC	1 cut(s)	790
NarI	GGCGCC	1 cut(s)	398
NciI	CCSGG	2 cut(s)	68, 1024
NdeI	CATATG	1 cut(s)	3603
NgoMIV	GCCGGC	1 cut(s)	788
NlaIV	GGNNCC	8 cut(s)	71, 178, 219, 399, 524, 909, 2732, 3314
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	4 cut(s)	334, 1124, 2059, 2167
NruI	TCGCGA	1 cut(s)	2343
NsiI	ATGCAT	2 cut(s)	1326, 1768
NspI	RCATGY	6 cut(s)	296, 2874, 3002, 3152, 3667, 3817
PaeI	GCATGC	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	1287
PagI	TCATGA	2 cut(s)	946, 3838
PaqCI	CACCTGC	1 cut(s)	1241
PceI	AGGCCT	1 cut(s)	1050
PciI	ACATGT	4 cut(s)	2870, 2998, 3148, 3813
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PctI	GAATGC	2 cut(s)	1768, 3541
PdiI	GCCGGC	1 cut(s)	790
PdmI	GAANNNNTTC	4 cut(s)	1634, 1977, 2278, 2473
PinAI	ACCGGT	1 cut(s)	72
PleI	GAGTC	5 cut(s)	688, 728, 772, 2582, 3782
PluTI	GGCGCC	1 cut(s)	401
PmaCI	CACGTG	1 cut(s)	3049
PmlI	CACGTG	1 cut(s)	3049
PpsI	GAGTC	5 cut(s)	688, 728, 772, 2582, 3782
Ppu21I	YACGTR	2 cut(s)	1010, 3049
PscI	ACATGT	4 cut(s)	2870, 2998, 3148, 3813
PsiI	TTATAA	1 cut(s)	1064
Psp124BI	GAGCTC	2 cut(s)	3582, 3883
Psp6I	CCWGG	5 cut(s)	201, 685, 727, 2171, 3693
PspCI	CACGTG	1 cut(s)	3049
PspEI	GGTNACC	1 cut(s)	2167
PspGI	CCWGG	5 cut(s)	201, 685, 727, 2171, 3693
PspN4I	GGNNCC	8 cut(s)	71, 178, 219, 399, 524, 909, 2732, 3314
PspPI	GGNCC	3 cut(s)	70, 908, 3433
PstI	CTGCAG	1 cut(s)	2512
PstNI	CAGNNNCTG	2 cut(s)	593, 2972
PsuI	RGATCY	2 cut(s)	1310, 2134
RruI	TCGCGA	1 cut(s)	2343
RseI	CAYNNNNRTG	2 cut(s)	158, 3668
SacI	GAGCTC	2 cut(s)	3582, 3883
SalI	GTCGAC	2 cut(s)	418, 2618
SaqAI	TTAA	7 cut(s)	1491, 1611, 1875, 1995, 2745, 3743, 3919
Sau96I	GGNCC	3 cut(s)	70, 908, 3433
ScaI	AGTACT	6 cut(s)	1524, 1644, 1726, 1776, 1908, 2028
SchI	GAGTC	5 cut(s)	689, 728, 773, 2582, 3782
ScrFI	CCNGG	7 cut(s)	68, 203, 687, 729, 1024, 2173, 3695
SduI	GDGCHC	6 cut(s)	287, 1044, 3582, 3821, 3838, 3883
SfcI	CTRYAG	3 cut(s)	768, 2313, 2508
SfoI	GGCGCC	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	1287
SinI	GGWCC	3 cut(s)	70, 908, 3433
SlaI	CTCGAG	1 cut(s)	1287
SmiMI	CAYNNNNRTG	2 cut(s)	158, 3668
SmlI	CTYRAG	5 cut(s)	125, 1287, 2428, 3592, 3827
SmoI	CTYRAG	5 cut(s)	125, 1287, 2428, 3592, 3827
SpeI	ACTAGT	2 cut(s)	1346, 2093
SphI	GCATGC	1 cut(s)	296
SseBI	AGGCCT	1 cut(s)	1050
SsiI	CCGC	6 cut(s)	64, 1073, 1159, 1274, 3763, 3858
SspDI	GGCGCC	1 cut(s)	397
SstI	GAGCTC	2 cut(s)	3582, 3883
StuI	AGGCCT	1 cut(s)	1050
StyD4I	CCNGG	7 cut(s)	66, 201, 685, 727, 1022, 2171, 3693
StyI	CCWWGG	3 cut(s)	429, 2203, 2613
TaiI	ACGT	5 cut(s)	419, 1012, 1237, 1437, 3051
TatI	WGTACW	9 cut(s)	1522, 1642, 1724, 1774, 1906, 2026, 3001, 3151, 3798
TauI	GCSGC	1 cut(s)	3765
Tru1I	TTAA	7 cut(s)	1491, 1611, 1875, 1995, 2745, 3743, 3919
Tru9I	TTAA	7 cut(s)	1491, 1611, 1875, 1995, 2745, 3743, 3919
TseFI	GTSAC	4 cut(s)	334, 1124, 2059, 2167
Tsp45I	GTSAC	4 cut(s)	334, 1124, 2059, 2167
TspGWI	ACGGA	3 cut(s)	987, 2670, 2713
VneI	GTGCAC	1 cut(s)	3817
VpaK11BI	GGWCC	3 cut(s)	70, 908, 3433
XapI	RAATTY	6 cut(s)	507, 841, 1200, 1337, 2473, 2803
XceI	RCATGY	6 cut(s)	296, 2874, 3002, 3152, 3667, 3817
XcmI	CCANNNNNNNNNTGG	2 cut(s)	481, 2703
XhoI	CTCGAG	1 cut(s)	1287
XmiI	GTMKAC	4 cut(s)	419, 1437, 2619, 3660
XmnI	GAANNNNTTC	4 cut(s)	1634, 1977, 2278, 2473
ZraI	GACGTC	1 cut(s)	417
ZrmI	AGTACT	6 cut(s)	1524, 1644, 1726, 1776, 1908, 2028
Zsp2I	ATGCAT	2 cut(s)	1326, 1768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.