Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004133

Physical Location & Seq

Genomic Coordinates Forward (+)

34180163 .. 34180993

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG204900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAATGATGGAACATTTCGTGGTGGTGCACAGGCATTTAAGCTGGACACACTCTTGAAATTGTCAGATGTAAAGGGAACAGATGGCAAGACAACTCTTTTGCACTTTGTTGTTCAGGAAATAATCCGCTCTGAGGGTGTGAGAGCTGCTCGTGCAGCAAAAGAGAACCGGAGTTTCTCTAGCGTCAAAACAGATGATCTCCTTGACGAAACTTCCCATGACACAGAAGAGCACTATTGTAATCTTGGTCTGGAGAAAGTATCAGGTTTAAGCAATGAACTCGAGAATGTAAAAAAAGCATCAATTTTGGATGCTGATAGCTTAACAGGAACTGTTGCCAAACTTGGAAGTGCTCTGGTAAAAGCCCGAGATTTTCTGAACTCAGACATGAAGAAGTCAGGGGAAGAAAGTGGTTTTCATGAAACACTGAAGAGTTTTGTGCAGAATGCTGATGTTGATATCAGGGGTCTCTGTGAGGAAGAAAAGAGAATCATGGCTCTGGTAAAGAGCACTGGAGACTATTTCCATGGGAATGCAGGGAAGGATGAGGGTTTACATTTGTTTGTTGTTGTGCGGGATTTTTTAATAATTTTAGATAAGGTATGCAAAGAAGTGAGATTGAATCCAAAAAAGTTCGCAAAGGTTCAGAAAAAGGAGGCACCTTCCTCTGATCCCCACCAGCCTCTTACAACGCCATCTGCCTCTGATCCCCACCAGCCTCCTTCTCCTGGTCTACGCCAGCCTCCTTTTCCAGATCTCCATCAGCGGCTTTTCCCGGCAATCAAGGATCGGCGCATGGACAATTCTAGCTCAGATGATGAAGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009524 GO:0009653 GO:0009791 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010638 GO:0016043 GO:0022414 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030312 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0034622 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044424 GO:0044444 GO:0044464 GO:0045010 GO:0048316 GO:0048317 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051258 GO:0051493 GO:0051495 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0090698 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04320 map04320

Pfam Domains

Protein Families

FH2

Protein Analysis

276

Amino Acids

30.41

Weight (kDa)

6.01

Isoelectric Point (pI)

31.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FH2	PF02181	1 - 197	5.2e-38	Formin Homology 2 Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54650 AT5G54650
fragaria_vesca	FvH4_3g21670 FvH4_3g21670 FvH4_3g21670 FvH4_3g21670 FvH4_3g21670 FvH4_3g21670
malus_domestica	MD03G1213400.v1.1 MD11G1228300.v1.1
prunus_persica	Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1 Prupe.4G201000_v2.0.a1
pyrus_communis	pycom03g16200 pycom11g20090
rosa_chinensis	RchiOBHm_Chr5g0037151
rosa_laevigata	RLG00000033762
rosa_multiflora	Rmu_ssc0000448.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043830
rosa_rugosa	Rorug05G0161100 Rorug05G0161100 Rorug05G0161200
rosa_samantha	Rh5AG252800 Rh5BG254700 Rh5CG287200 Rh5DG263200 Rh6CG204900
rosa_wichuraiana	Rw5G023330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	658
AccBSI	CCGCTC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	733
AciI	CCGC	3 cut(s)	127, 574, 766
AclWI	GGATC	3 cut(s)	665, 701, 795
AcuI	CTGAAG	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	133, 728
AgsI	TTSAA	2 cut(s)	58, 622
AjnI	CCWGG	1 cut(s)	727
AluBI	AGCT	4 cut(s)	43, 146, 321, 810
AluI	AGCT	4 cut(s)	43, 146, 321, 810
Alw21I	GWGCWC	4 cut(s)	31, 234, 355, 512
Alw26I	GTCTC	2 cut(s)	473, 510
Alw44I	GTGCAC	1 cut(s)	27
AlwI	GGATC	3 cut(s)	665, 701, 795
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	2 cut(s)	281, 366
ApaLI	GTGCAC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	146, 155
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AspLEI	GCGC	1 cut(s)	795
AspS9I	GGNCC	1 cut(s)	824
AsuC2I	CCSGG	1 cut(s)	776
AvaI	CYCGRG	2 cut(s)	281, 366
AvaII	GGWCC	1 cut(s)	824
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	658
BauI	CACGAG	1 cut(s)	150
Bbv12I	GWGCWC	4 cut(s)	31, 234, 355, 512
BbvI	GCAGC	2 cut(s)	133, 167
BccI	CCATC	4 cut(s)	2, 77, 703, 768
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	1 cut(s)	729
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	2 cut(s)	473, 510
BfaI	CTAG	2 cut(s)	180, 807
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	3 cut(s)	147, 156, 767
BlsI	GCNGC	3 cut(s)	148, 157, 768
Bme1390I	CCNGG	2 cut(s)	729, 776
Bme18I	GGWCC	1 cut(s)	824
BmeT110I	CYCGRG	2 cut(s)	281, 366
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	2 cut(s)	729, 776
BmsI	GCATC	2 cut(s)	301, 308
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
BpmI	CTGGAG	2 cut(s)	272, 534
BpuMI	CCSGG	1 cut(s)	776
BsaBI	GATNNNNATC	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 728
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	280
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	316, 550
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	2 cut(s)	133, 728
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	3 cut(s)	123, 396, 825
BseNI	ACTGG	1 cut(s)	517
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	133, 167
BsgI	GTGCAG	2 cut(s)	174, 461
BshNI	GGYRCC	1 cut(s)	658
BsiHKAI	GWGCWC	4 cut(s)	31, 234, 355, 512
BsiHKCI	CYCGRG	2 cut(s)	281, 366
BsiSI	CCGG	2 cut(s)	169, 776
BslI	CCNNNNNNNGG	2 cut(s)	133, 728
BsmAI	GTCTC	2 cut(s)	473, 510
BsmI	GAATGC	2 cut(s)	451, 538
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	2 cut(s)	281, 366
Bsp1286I	GDGCHC	4 cut(s)	31, 234, 355, 512
Bsp143I	GATC	5 cut(s)	196, 670, 706, 754, 787
Bsp19I	CCATGG	1 cut(s)	526
BspACI	CCGC	3 cut(s)	127, 574, 766
BspCNI	CTCAG	3 cut(s)	124, 395, 824
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	660
BspPI	GGATC	3 cut(s)	665, 701, 795
BspQI	GCTCTTC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	5 cut(s)	196, 670, 706, 754, 787
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	526
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	2 cut(s)	222, 425
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	3 cut(s)	132, 382, 811
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	316, 550
BstHHI	GCGC	1 cut(s)	795
BstKTI	GATC	5 cut(s)	199, 673, 709, 757, 790
BstMAI	GTCTC	2 cut(s)	473, 510
BstMBI	GATC	5 cut(s)	196, 670, 706, 754, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 155
BstNI	CCWGG	1 cut(s)	729
BstSCI	CCNGG	2 cut(s)	727, 774
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	133, 167
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	2 cut(s)	316, 550
BtsIMutI	CAGTG	2 cut(s)	425, 510
Cac8I	GCNNGC	1 cut(s)	740
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	795
Cfr13I	GGNCC	1 cut(s)	824
CseI	GACGC	1 cut(s)	172
CviAII	CATG	6 cut(s)	218, 388, 419, 493, 527, 796
DdeI	CTNAG	3 cut(s)	132, 382, 811
DpnI	GATC	5 cut(s)	198, 672, 708, 756, 789
DpnII	GATC	5 cut(s)	196, 670, 706, 754, 787
Eam1104I	CTCTTC	2 cut(s)	222, 425
EarI	CTCTTC	2 cut(s)	222, 425
Eco130I	CCWWGG	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	824
Eco57I	CTGAAG	1 cut(s)	449
Eco88I	CYCGRG	2 cut(s)	281, 366
EcoRII	CCWGG	1 cut(s)	727
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	6 cut(s)	221, 391, 422, 496, 530, 799
FaiI	YATR	8 cut(s)	219, 389, 420, 494, 528, 604, 797, 829
FatI	CATG	6 cut(s)	217, 387, 418, 492, 526, 795
FauI	CCCGC	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	733
Fnu4HI	GCNGC	3 cut(s)	147, 156, 767
FokI	GGATG	2 cut(s)	323, 557
Fsp4HI	GCNGC	3 cut(s)	147, 156, 767
FspBI	CTAG	2 cut(s)	180, 807
GlaI	GCGC	1 cut(s)	794
GluI	GCNGC	3 cut(s)	147, 156, 767
GsuI	CTGGAG	2 cut(s)	272, 534
HapII	CCGG	2 cut(s)	169, 776
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	795
Hin1II	CATG	6 cut(s)	221, 391, 422, 496, 530, 799
Hin6I	GCGC	1 cut(s)	793
HinP1I	GCGC	1 cut(s)	793
HinfI	GANTC	2 cut(s)	489, 622
HpaII	CCGG	2 cut(s)	169, 776
Hpy166II	GTNNAC	3 cut(s)	29, 554, 734
Hpy188I	TCNGA	8 cut(s)	67, 133, 378, 385, 648, 670, 706, 814
Hpy188III	TCNNGA	6 cut(s)	55, 116, 251, 283, 419, 752
Hpy8I	GTNNAC	3 cut(s)	29, 554, 734
HpyAV	CCTTC	4 cut(s)	535, 672, 732, 815
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	6 cut(s)	29, 103, 155, 442, 536, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 155
HpyF3I	CTNAG	3 cut(s)	132, 382, 811
Hsp92II	CATG	6 cut(s)	221, 391, 422, 496, 530, 799
HspAI	GCGC	1 cut(s)	793
Kzo9I	GATC	5 cut(s)	196, 670, 706, 754, 787
LguI	GCTCTTC	1 cut(s)	222
Lsp1109I	GCAGC	2 cut(s)	133, 167
LweI	GCATC	2 cut(s)	301, 308
MaeI	CTAG	2 cut(s)	180, 807
MalI	GATC	5 cut(s)	198, 672, 708, 756, 789
MbiI	CCGCTC	1 cut(s)	129
MboI	GATC	5 cut(s)	196, 670, 706, 754, 787
MboII	GAAGA	5 cut(s)	239, 403, 416, 442, 491
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	4 cut(s)	31, 234, 355, 512
MluCI	AATT	4 cut(s)	59, 303, 588, 802
MnlI	CCTC	9 cut(s)	127, 469, 541, 649, 676, 693, 712, 729, 753
MseI	TTAA	4 cut(s)	39, 269, 323, 584
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	766
MspI	CCGG	2 cut(s)	169, 776
MspR9I	CCNGG	2 cut(s)	729, 776
Mva1269I	GAATGC	2 cut(s)	451, 538
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	2 cut(s)	152, 155
NciI	CCSGG	1 cut(s)	776
NcoI	CCATGG	1 cut(s)	526
NdeII	GATC	5 cut(s)	196, 670, 706, 754, 787
NlaIII	CATG	6 cut(s)	221, 391, 422, 496, 530, 799
NlaIV	GGNNCC	1 cut(s)	660
PaeR7I	CTCGAG	1 cut(s)	281
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	222
PctI	GAATGC	2 cut(s)	451, 538
PfeI	GAWTC	2 cut(s)	489, 622
PkrI	GCNGC	3 cut(s)	148, 157, 768
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	1 cut(s)	660
PspPI	GGNCC	1 cut(s)	824
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	754
RseI	CAYNNNNRTG	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	39, 269, 323, 584
SatI	GCNGC	3 cut(s)	147, 156, 767
Sau3AI	GATC	5 cut(s)	196, 670, 706, 754, 787
Sau96I	GGNCC	1 cut(s)	824
ScrFI	CCNGG	2 cut(s)	729, 776
SduI	GDGCHC	4 cut(s)	31, 234, 355, 512
SetI	ASST	9 cut(s)	45, 148, 268, 323, 603, 645, 664, 812, 826
SfaNI	GCATC	2 cut(s)	301, 308
Sfr274I	CTCGAG	1 cut(s)	281
SinI	GGWCC	1 cut(s)	824
SlaI	CTCGAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	4 cut(s)	59, 303, 588, 802
SsiI	CCGC	3 cut(s)	127, 574, 766
SspMI	CTAG	2 cut(s)	180, 807
StyD4I	CCNGG	2 cut(s)	727, 774
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	282
TasI	AATT	4 cut(s)	59, 303, 588, 802
TauI	GCSGC	1 cut(s)	769
TfiI	GAWTC	2 cut(s)	489, 622
Tru1I	TTAA	4 cut(s)	39, 269, 323, 584
Tru9I	TTAA	4 cut(s)	39, 269, 323, 584
TscAI	CASTG	2 cut(s)	432, 517
TseI	GCWGC	2 cut(s)	146, 155
TspDTI	ATGAA	5 cut(s)	17, 291, 404, 407, 435
TspRI	CASTG	2 cut(s)	432, 517
VneI	GTGCAC	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	824
XhoI	CTCGAG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	733
XspI	CTAG	2 cut(s)	180, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.