Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009445

Physical Location & Seq

Genomic Coordinates Forward (+)

14976097 .. 14980686

Gene Structure 4590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0161000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3786 bp

ATGGCTATAACAACAACAAAGATGTCAACTTTACCACTTTTTCTTATTCTTCTTGTCATTTCTTCTATTTTTGTGGAGGCAGAGCTCGATAGCAATACCGCCAATACGACTCTAAAAGTGCTTTTGGAGGTGAAGAAGACGTTTTTGGAGGACCCAATATCCGAAACAGCCTTGCATGGATGGTCTGAAAGCAACCCAAATTTCTGTACTTGGAGAGGAGTGACATGCGGGTCTGACTCGGTCGATGACTCGGTCCAAGTGGTCGGACTCAACCTTTCCGACTCGTCACTCGGCGGGTCAATATCTCCCCAACTCGGTAGTTTGAAGTACCTGCTCCACCTCGATCTCTCTTCTAACGACCTCACGGGACCCATCCCACCAGCCCTCTCAAACCTCTCTTCCATGGAATCTTTGCTCCTCTTTACGAACCGACTCGGTGGACCCATCCCGAGTGAACTCGGCTCGCTCACGAGTCTCCGGGTCATGAGAATCGGTGACAATGAGCTAACCGGGTCCATTCCAGCCTCATTTGGTAACCTTGTCAATTTGGTCACCCTTGCGGTGGCGTCATGTGGTCTCAACGGTCCAATACCACCCCAACTCGGCCGGCTCGGTCAGCTGGAGAATTTAATCATCCAGCAGAACCAACTCGAGGGTCCAATTCCGGCCGAGTTGGGGAACTGTTCTAGTCTCACTCTGTTCACGGCTGCTGAAAATAAACTCAACGGCTCGATTCCCGGGGAATTGGGTCAGCTCACCAATCTCCAGCTACTCAACTTGGTCAACAACAGCCTCTCCGGGGAGATACCGAGTCAACTCGGTGGGATGAGTCAACTCGGGTACCTGAACTTTATGGGGAACCAACTCGAGGGTGCAATACCCAAGTCCTTGGCTCAATTGGGCAATCTTCAGAATCTTGATTTGTCCATTAACAAGCTCACAGGAGGAATCCCAGAGGAACTAGGTAACATGGGTCAACTGGTTTACTTGGTTTTGTCCAACAACAATCTCTCTGGTGTTATACCAAAGACTATATGCTCCAATGCAACTAGTTTGGAGCACTTGGTGATATCTGATTCTCAAATTTTCGGCGAAATCCCAGCTGAGCTGAGCCAGTGTCAATCCCTGAAGCAACTTGACTTGTCCAACAACTCAATCAGTGGATCAATTCCACTCGAACTGTATGGCTTGGTGGAGTTAACTGACCTCTTGCTCCACAACAACAGCTTGGCTGGTTCAATTTCTCCTTATATAGGCAACCTCAGCAATCTTCAGACTCTTGTTTTGTATCACAACAATTTGCAGGGTCCTCTGCCGAAAGAGATTGGTATGCTTGGGCAGCTAGAGATTTTGTATCTCTATGATAACCAGCTAAGTGGTGAAATCCCAATTGAGATTGGGAATTGTTCGAGTTTGCAGATGATTGACTTCTTTGGGAACAAGTTCAGTGGGGAGATCCCAATCACTATTGGGAGGCTCAAAGATTTGAACTTTCTTCATATCAGGCAGAATGAGCTAGTGGGTGAGCTTCCTGCCGCATTGGGCAACTGTCGTCAACTGACTATCCTGGACTTGGCGGATAACCGTTTGTCTGGTGGCATTCCTATTACATTTGGGTCTCTTCAAGCAATGCAGCAGTTCATGCTATACAACAATTCACTTGAAGGTAATCTTCCTGAAACATTGGTTAATATGGCGAATTTGACTAGAGTGAATCTGTCGAAAAACAAATTGAATGGAAGCATTGCTGCATTATGTAGCTCGAATTCATTCCTTTCTTTTGATGTCACTGACAATGCCTTTGATGGTGAGATTCCTCCCCATCTGGGAAATTCAACCTCCCTTGAGAGGTTGAGATTGGGGAACAACCAATTTATGGGTCCAATCCCAGTTACCCTGGGAAAAATCAGTGAGCTATCACTGTTAGATGTGTCAGGGAATTCACTCACTGGACCAATCCCAGCTGAGCTTTCATCGTGCAAGAAATTGTCTCATTTTGATTTGAATGACAACCTTCTTTCTGGCATCATTCCCATGTGGCTTGGAAGTTTGCCTCAGCTAGGAGAGTTGAAGCTCTCCTCGAATCGATTCACAGGGCCGCTTCCCCAAGAGTTGTTCAATTGTTCTAAACTGCTAGTGCTTTCTTTGAATGACAATTTGCTCAATGGAACCCTCCCTGCTGAGATTGGCAACCTGGGTTCTCTCAATGTCCTAAACCTCGACCACAACCAATTCTCGGGACCAATGCCTCCAGCCATTGGTAAGCTAGGCAACCTCTATGAGCTTAGGCTCTCACAAAACAGCTTTGATGGTGACATACCCTATGAGGTTGGACAACTCCAAAATCTTCAGAGCATGTTAGACCTCAGTTCCAATAAACTGAATGGTCAGATCCCGGCATCTATTGGGACACTATCAAAACTTGAGGCGCTTAATCTATCTCACAATCAACTTAGTGGAGAAGTCCCCTCTACAATTGGTGCAATGAGTAGCTTGGGAAAGCTTAATCTCACTTACAACAATCTGGAAGGAAAATTGAGCAAGCAACTCTCACACTGGCCAGCCGAGGCCTTTGCAGGAAATTTACATCTTTGTGGGAACCCTCTTGGTAGCTGCAATGGCAGCAAGAACCAGTCAGGCCCAAATGAATTGACTGTGGTAGTCATTTCTGCATTATGTACTTTAGCTGCAATTGCCCTGCTAATATTTGGAGCTGCTTCTTTCTTGAAACACAGGCGAGAAGCGCTTAGAAAAGCCAGTGAAGTGAACTGCGTGTACTCATCGAGTTCTTCTCATGCTAAGCGGAGACTGCTATTTTCAAATGGTTCTGTCAAACCAGATTTCAAGTGGAAAGACATCATGGATTCCACCAACAATCTAAGTAAAGAGTTTATGATCGGATCAGGAGGATCCGGAGTAGTCTACAGAGCTGAATTGTCTACCGGAGAAACTGTGGCAGTGAAGAAGATTTTGTACAAGGATGACCTTATGTCAAATAAAAGCTTCACAAGGGAGATTAAGACGCTTGGGAGGATAAGGCACAGGCATTTAGTGAAGCTAATGGGGTATTGTAGCAACAAGGGAGCAGGCTCCAATCTGTTGATCTATGAGTACATGGAAAATGGAAGCGTATGGGATTGGATACACAAAGAACAAGTTAACAGCAAGAAGAAGAGCCTTGATTGGGAAGCAAGGTTAAAGATTGCAGTTGGGTTAGCTCAAGGAGTGGAGTATCTCCACCATGACTGTGTGCCAAAGATCATTCACAGGGACATTAAATCAAGCAATGTCTTGCTAGACTCGAATATGGAGGCACATCTTGGGGATTTTGGCCTTGCCAAGACACTCAATGAGAATTTTGAGTCCAACACAGAATCAACTACATGGTTTGCTGGATCCTACGGTTACATAGCCCCAGAGTATGCATATTCGCTCAAGGCGACAGAAAAGAGTGATGTCTACAGCATGGGAATTGTGCTAATGGAGCTCGTCAGCGGAAAAATGCCGACGGATGCATCTTTTGGAGCAGAGATGGACATGGTGAGATGGGTGGAGACGCATATTGAAATGCAAGATCAAATTCGTGAGGAATTGATAGACCCTGCACTGAGACCACTCTTATCCGGGGAAGAATATGCAGCATTCCAAGTACTAGAGATAGCACTGCAGTGCACAAAAACCAGCCCGGCAGAGAGGCCTTCATCACGGCAAGCCTGTGATCAGTTATTACATGTTTTCAATCATAGGATGGTGGAGTTTGATAAGATGAATGTAGATAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Utp11

Protein Analysis

1261

Amino Acids

136.7

Weight (kDa)

5.2

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	39 - 76	5.5e-07	Leucine rich repeat N-terminal domain
LRR_14	PF23598	152 - 261	8.8e-09	Leucine-rich repeat region
LRR_14	PF23598	271 - 381	1.5e-07	Leucine-rich repeat region
LRR_8	PF13855	351 - 410	3.7e-06	Leucine rich repeat
LRR_14	PF23598	368 - 476	1.3e-08	Leucine-rich repeat region
LRR_14	PF23598	484 - 576	1.2e-06	Leucine-rich repeat region
LRR_8	PF13855	518 - 578	3.7e-07	Leucine rich repeat
LRR_8	PF13855	638 - 697	8.4e-06	Leucine rich repeat
LRR_8	PF13855	758 - 818	6e-06	Leucine rich repeat
LRR_14	PF23598	762 - 840	3e-07	Leucine-rich repeat region
LRR_8	PF13855	786 - 842	4.9e-06	Leucine rich repeat
Pkinase	PF00069	965 - 1241	2.7e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	965 - 1240	3.7e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60360
fragaria_vesca	FvH4_3g21660
malus_domestica	MD11G1228500.v1.1 MD11G1228700.v1.1 MD15G1425000.v1.1
prunus_persica	Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.8G106900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037141
rosa_laevigata	RLG00000033753
rosa_multiflora	Rmu_ssc0000448.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043840
rosa_rugosa	Rorug05G0161000 Rorug05G0161100
rosa_samantha	Rh5AG252700 Rh5BG254600 Rh5CG287100 Rh5DG263000 Rh6CG205000
rosa_wichuraiana	Rw5G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	229
Acc36I	ACCTGC	1 cut(s)	339
Acc65I	GGTACC	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	840
AccB7I	CCANNNNNTGG	2 cut(s)	1876, 2258
AccI	GTMKAC	3 cut(s)	2922, 2939, 3459
AccIII	TCCGGA	1 cut(s)	2912
AciI	CCGC	9 cut(s)	99, 228, 294, 560, 1536, 1577, 2099, 2803, 3495
AclWI	GGATC	8 cut(s)	1171, 1450, 2386, 2904, 2908, 2917, 3390, 3403
AcoI	YGGCCR	3 cut(s)	604, 666, 2558
AcuI	CTGAAG	4 cut(s)	893, 1148, 1256, 2333
AcyI	GRCGYC	1 cut(s)	566
AdeI	CACNNNGTG	1 cut(s)	1066
AfaI	GTAC	8 cut(s)	208, 329, 842, 2680, 2777, 2975, 3113, 3651
AfeI	AGCGCT	1 cut(s)	2745
AflIII	ACRYGT	1 cut(s)	3730
AhdI	GACNNNNNGTC	1 cut(s)	2989
AhlI	ACTAGT	1 cut(s)	1049
AjnI	CCWGG	3 cut(s)	1566, 1896, 2193
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AleI	CACNNNNGTG	1 cut(s)	3667
Alw21I	GWGCWC	4 cut(s)	87, 1062, 3489, 3674
Alw26I	GTCTC	8 cut(s)	479, 581, 695, 1623, 1995, 2800, 3548, 3604
Alw44I	GTGCAC	1 cut(s)	3670
AlwI	GGATC	8 cut(s)	1171, 1450, 2386, 2904, 2908, 2917, 3390, 3403
Ama87I	CYCGRG	6 cut(s)	448, 650, 737, 836, 866, 2236
Aor13HI	TCCGGA	1 cut(s)	2912
Aor51HI	AGCGCT	1 cut(s)	2745
AoxI	GGCC	8 cut(s)	604, 666, 2096, 2558, 2568, 2638, 3331, 3695
ApaLI	GTGCAC	1 cut(s)	3670
ApeKI	GCWGC	9 cut(s)	707, 1339, 1633, 1748, 2613, 2622, 2687, 2714, 3638
ArsI	GACNNNNNNTTYG	4 cut(s)	1267, 1299, 1784, 1816
Asp700I	GAANNNNTTC	3 cut(s)	1442, 1769, 2087
Asp718I	GGTACC	1 cut(s)	840
AspLEI	GCGC	2 cut(s)	2431, 2746
AsuC2I	CCSGG	8 cut(s)	479, 511, 738, 739, 799, 2396, 3625, 3686
AvaI	CYCGRG	6 cut(s)	448, 650, 737, 836, 866, 2236
BaeGI	GKGCMC	1 cut(s)	3674
BaeI	ACNNNNGTAYC	2 cut(s)	824, 857
BalI	TGGCCA	1 cut(s)	2560
BamHI	GGATCC	2 cut(s)	2909, 3395
BanI	GGYRCC	1 cut(s)	840
BanII	GRGCYC	2 cut(s)	87, 3489
BarI	GAAGNNNNNNTAC	2 cut(s)	2957, 2989
BauI	CACGAG	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	4 cut(s)	87, 1062, 3489, 3674
BbvCI	CCTCAGC	2 cut(s)	1262, 2055
BbvI	GCAGC	9 cut(s)	694, 1351, 1645, 1735, 2600, 2634, 2674, 2701, 3650
BccI	CCATC	9 cut(s)	174, 380, 452, 1799, 1830, 2303, 3526, 3540, 3742
BceAI	ACGGC	3 cut(s)	720, 742, 3722
BcgI	CGANNNNNNTGC	2 cut(s)	2555, 2589
BciT130I	CCWGG	3 cut(s)	1568, 1898, 2195
BciVI	GTATCC	1 cut(s)	3135
BclI	TGATCA	1 cut(s)	3718
BcnI	CCSGG	8 cut(s)	479, 511, 738, 739, 799, 2396, 3625, 3686
BcoDI	GTCTC	8 cut(s)	479, 581, 695, 1623, 1995, 2800, 3548, 3604
BcuI	ACTAGT	1 cut(s)	1049
BfmI	CTRYAG	3 cut(s)	2923, 3460, 3665
BfoI	RGCGCY	2 cut(s)	2432, 2747
BfuAI	ACCTGC	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	3135
BlpI	GCTNAGC	4 cut(s)	1104, 1109, 1965, 2799
BmcAI	AGTACT	1 cut(s)	3651
BmeRI	GACNNNNNGTC	1 cut(s)	2989
BmeT110I	CYCGRG	6 cut(s)	448, 650, 737, 836, 866, 2236
BmrI	ACTGGG	1 cut(s)	1883
BmsI	GCATC	4 cut(s)	2034, 2408, 3502, 3524
BmuI	ACTGGG	1 cut(s)	1883
BpiI	GAAGAC	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	2776, 2808
BpmI	CTGGAG	3 cut(s)	641, 749, 2235
Bpu10I	CCTNAGC	3 cut(s)	1262, 2055, 2285
Bpu1102I	GCTNAGC	4 cut(s)	1104, 1109, 1965, 2799
BpuEI	CTTGAG	4 cut(s)	1865, 2444, 3204, 3419
BpuMI	CCSGG	8 cut(s)	479, 511, 738, 739, 799, 2396, 3625, 3686
Bsa29I	ATCGAT	1 cut(s)	2086
BsaBI	GATNNNNATC	1 cut(s)	1460
BsaHI	GRCGYC	1 cut(s)	566
BsaI	GGTCTC	3 cut(s)	581, 1623, 3604
BsaWI	WCCGGW	2 cut(s)	2912, 2942
BsaXI	ACNNNNNCTCC	4 cut(s)	779, 809, 2937, 2967
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	7 cut(s)	984, 1114, 1889, 1954, 2561, 2632, 2757
Bse3DI	GCAATG	5 cut(s)	1635, 1743, 2490, 2623, 3292
Bse8I	GATNNNNATC	1 cut(s)	1460
BseAI	TCCGGA	1 cut(s)	2912
BseBI	CCWGG	3 cut(s)	1568, 1898, 2195
BseCI	ATCGAT	1 cut(s)	2086
BseGI	GGATG	8 cut(s)	185, 372, 444, 633, 831, 2986, 3517, 3753
BseJI	GATNNNNATC	1 cut(s)	1460
BseMI	GCAATG	5 cut(s)	1635, 1743, 2490, 2623, 3292
BseMII	CTCAG	8 cut(s)	1095, 1100, 1276, 1956, 2069, 2172, 2380, 3599
BseNI	ACTGG	7 cut(s)	984, 1114, 1889, 1954, 2561, 2632, 2757
BseRI	GAGGAG	3 cut(s)	231, 407, 2068
BseSI	GKGCMC	1 cut(s)	3674
BseX3I	CGGCCG	2 cut(s)	604, 666
BseXI	GCAGC	9 cut(s)	694, 1351, 1645, 1735, 2600, 2634, 2674, 2701, 3650
BseYI	CCCAGC	2 cut(s)	1099, 1960
BsgI	GTGCAG	1 cut(s)	3588
Bsh1285I	CGRYCG	3 cut(s)	243, 607, 669
BshFI	GGCC	8 cut(s)	606, 668, 2098, 2560, 2570, 2640, 3333, 3697
BshNI	GGYRCC	1 cut(s)	840
BshVI	ATCGAT	1 cut(s)	2086
BsiEI	CGRYCG	3 cut(s)	243, 607, 669
BsiHKAI	GWGCWC	4 cut(s)	87, 1062, 3489, 3674
BsiHKCI	CYCGRG	6 cut(s)	448, 650, 737, 836, 866, 2236
BslFI	GGGAC	5 cut(s)	381, 2253, 2422, 2450, 3284
BsmAI	GTCTC	8 cut(s)	479, 581, 695, 1623, 1995, 2800, 3548, 3604
BsmBI	CGTCTC	1 cut(s)	3548
BsmFI	GGGAC	5 cut(s)	381, 2253, 2422, 2450, 3284
BsmI	GAATGC	2 cut(s)	1599, 3641
BsnI	GGCC	8 cut(s)	606, 668, 2098, 2560, 2570, 2640, 3333, 3697
Bso31I	GGTCTC	3 cut(s)	581, 1623, 3604
BsoBI	CYCGRG	6 cut(s)	448, 650, 737, 836, 866, 2236
Bsp1286I	GDGCHC	4 cut(s)	87, 1062, 3489, 3674
Bsp13I	TCCGGA	1 cut(s)	2912
Bsp1407I	TGTACA	1 cut(s)	2973
Bsp1720I	GCTNAGC	4 cut(s)	1104, 1109, 1965, 2799
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	9 cut(s)	99, 228, 294, 560, 1536, 1577, 2099, 2803, 3495
BspANI	GGCC	8 cut(s)	606, 668, 2098, 2560, 2570, 2640, 3333, 3697
BspCNI	CTCAG	8 cut(s)	1096, 1101, 1275, 1957, 2068, 2173, 2379, 3600
BspDI	ATCGAT	1 cut(s)	2086
BspEI	TCCGGA	1 cut(s)	2912
BspHI	TCATGA	1 cut(s)	483
BspMAI	CTGCAG	1 cut(s)	3669
BspMI	ACCTGC	1 cut(s)	339
BspPI	GGATC	8 cut(s)	1171, 1450, 2386, 2904, 2908, 2917, 3390, 3403
BspQI	GCTCTTC	1 cut(s)	3167
BspT107I	GGYRCC	1 cut(s)	840
BspTNI	GGTCTC	3 cut(s)	581, 1623, 3604
BsrDI	GCAATG	5 cut(s)	1635, 1743, 2490, 2623, 3292
BsrFI	RCCGGY	1 cut(s)	606
BsrGI	TGTACA	1 cut(s)	2973
BsrI	ACTGG	7 cut(s)	984, 1114, 1889, 1954, 2561, 2632, 2757
BssAI	RCCGGY	1 cut(s)	606
BssNI	GRCGYC	1 cut(s)	566
BssSI	CACGAG	1 cut(s)	469
BssT1I	CCWWGG	2 cut(s)	402, 888
Bst2BI	CACGAG	1 cut(s)	469
Bst2UI	CCWGG	3 cut(s)	1568, 1898, 2195
Bst6I	CTCTTC	4 cut(s)	355, 403, 1626, 3167
BstACI	GRCGYC	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	1642
BstAUI	TGTACA	1 cut(s)	2973
BstC8I	GCNNGC	6 cut(s)	464, 608, 2543, 2562, 3088, 3711
BstDSI	CCRYGG	1 cut(s)	402
BstEII	GGTNACC	2 cut(s)	533, 550
BstENI	CCTNNNNNAGG	2 cut(s)	1251, 2058
BstF5I	GGATG	8 cut(s)	185, 372, 444, 633, 831, 2986, 3517, 3753
BstH2I	RGCGCY	2 cut(s)	2432, 2747
BstHHI	GCGC	2 cut(s)	2431, 2746
BstMAI	GTCTC	8 cut(s)	479, 581, 695, 1623, 1995, 2800, 3548, 3604
BstMCI	CGRYCG	3 cut(s)	243, 607, 669
BstNI	CCWGG	3 cut(s)	1568, 1898, 2195
BstNSI	RCATGY	3 cut(s)	228, 2359, 3734
BstPI	GGTNACC	2 cut(s)	533, 550
BstSFI	CTRYAG	3 cut(s)	2923, 3460, 3665
BstSLI	GKGCMC	1 cut(s)	3674
BstV1I	GCAGC	9 cut(s)	694, 1351, 1645, 1735, 2600, 2634, 2674, 2701, 3650
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	4 cut(s)	1455, 2391, 2909, 3395
BstXI	CCANNNNNNTGG	2 cut(s)	889, 1376
BstYI	RGATCY	4 cut(s)	1455, 2391, 2909, 3395
BstZI	CGGCCG	2 cut(s)	604, 666
Bsu15I	ATCGAT	1 cut(s)	2086
BsuI	GTATCC	1 cut(s)	3135
BsuRI	GGCC	8 cut(s)	606, 668, 2098, 2560, 2570, 2640, 3333, 3697
BsuTUI	ATCGAT	1 cut(s)	2086
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	8 cut(s)	185, 372, 444, 633, 831, 2986, 3517, 3753
BtsI	GCAGTG	3 cut(s)	2964, 3662, 3674
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	6 cut(s)	464, 608, 2543, 2562, 3088, 3711
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	2 cut(s)	2431, 2746
Cfr10I	RCCGGY	1 cut(s)	606
Cfr9I	CCCGGG	1 cut(s)	737
ClaI	ATCGAT	1 cut(s)	2086
CseI	GACGC	3 cut(s)	555, 3031, 3565
Csp6I	GTAC	8 cut(s)	207, 328, 841, 2679, 2776, 2974, 3112, 3650
CspCI	CAANNNNNGTGG	2 cut(s)	1429, 1464
CviQI	GTAC	8 cut(s)	207, 328, 841, 2679, 2776, 2974, 3112, 3650
DraIII	CACNNNGTG	1 cut(s)	1066
DrdI	GACNNNNNNGTC	1 cut(s)	229
DriI	GACNNNNNGTC	1 cut(s)	2989
DseDI	GACNNNNNNGTC	1 cut(s)	229
EaeI	YGGCCR	3 cut(s)	604, 666, 2558
EagI	CGGCCG	2 cut(s)	604, 666
Eam1104I	CTCTTC	4 cut(s)	355, 403, 1626, 3167
Eam1105I	GACNNNNNGTC	1 cut(s)	2989
EarI	CTCTTC	4 cut(s)	355, 403, 1626, 3167
EciI	GGCGGA	1 cut(s)	1592
Ecl136II	GAGCTC	2 cut(s)	85, 3487
EclXI	CGGCCG	2 cut(s)	604, 666
Eco130I	CCWWGG	2 cut(s)	402, 888
Eco147I	AGGCCT	2 cut(s)	2570, 3697
Eco24I	GRGCYC	2 cut(s)	87, 3489
Eco31I	GGTCTC	3 cut(s)	581, 1623, 3604
Eco32I	GATATC	1 cut(s)	1071
Eco47III	AGCGCT	1 cut(s)	2745
Eco52I	CGGCCG	2 cut(s)	604, 666
Eco53kI	GAGCTC	2 cut(s)	85, 3487
Eco57I	CTGAAG	4 cut(s)	893, 1148, 1256, 2333
Eco88I	CYCGRG	6 cut(s)	448, 650, 737, 836, 866, 2236
Eco91I	GGTNACC	2 cut(s)	533, 550
EcoICRI	GAGCTC	2 cut(s)	85, 3487
EcoNI	CCTNNNNNAGG	2 cut(s)	1251, 2058
EcoO109I	RGGNCCY	3 cut(s)	151, 368, 1307
EcoO65I	GGTNACC	2 cut(s)	533, 550
EcoRI	GAATTC	2 cut(s)	1765, 1939
EcoRII	CCWGG	3 cut(s)	1566, 1896, 2193
EcoRV	GATATC	1 cut(s)	1071
EcoT14I	CCWWGG	2 cut(s)	402, 888
EcoT22I	ATGCAT	2 cut(s)	3427, 3517
EcoT38I	GRGCYC	2 cut(s)	87, 3489
ErhI	CCWWGG	2 cut(s)	402, 888
Esp3I	CGTCTC	1 cut(s)	3548
FalI	AAGNNNNNCTT	2 cut(s)	1656, 1688
FaqI	GGGAC	5 cut(s)	381, 2253, 2422, 2450, 3284
FauI	CCCGC	2 cut(s)	221, 287
FbaI	TGATCA	1 cut(s)	3718
FblI	GTMKAC	3 cut(s)	2922, 2939, 3459
FokI	GGATG	8 cut(s)	192, 359, 431, 620, 838, 2993, 3524, 3760
FriOI	GRGCYC	2 cut(s)	87, 3489
GlaI	GCGC	2 cut(s)	2430, 2745
GsaI	CCCAGC	2 cut(s)	1103, 1964
GsuI	CTGGAG	3 cut(s)	641, 749, 2235
HaeII	RGCGCY	2 cut(s)	2432, 2747
HaeIII	GGCC	8 cut(s)	606, 668, 2098, 2560, 2570, 2640, 3333, 3697
HgaI	GACGC	3 cut(s)	555, 3031, 3565
HhaI	GCGC	2 cut(s)	2431, 2746
Hin1I	GRCGYC	1 cut(s)	566
Hin6I	GCGC	2 cut(s)	2429, 2744
HinP1I	GCGC	2 cut(s)	2429, 2744
HincII	GTYRAC	8 cut(s)	27, 784, 815, 833, 977, 1200, 1556, 3160
HindII	GTYRAC	8 cut(s)	27, 784, 815, 833, 977, 1200, 1556, 3160
HindIII	AAGCTT	2 cut(s)	2501, 3001
HpaI	GTTAAC	2 cut(s)	1200, 3160
Hpy99I	CGWCG	1 cut(s)	3511
HpyAV	CCTTC	4 cut(s)	1658, 2024, 2522, 3708
HpyCH4IV	ACGT	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	566
HspAI	GCGC	2 cut(s)	2429, 2744
KflI	GGGWCCC	1 cut(s)	368
Kpn2I	TCCGGA	1 cut(s)	2912
KpnI	GGTACC	1 cut(s)	844
KroI	GCCGGC	1 cut(s)	606
KroNI	GCCGGC	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	3718
KspAI	GTTAAC	2 cut(s)	1200, 3160
LguI	GCTCTTC	1 cut(s)	3167
Lsp1109I	GCAGC	9 cut(s)	694, 1351, 1645, 1735, 2600, 2634, 2674, 2701, 3650
LweI	GCATC	4 cut(s)	2034, 2408, 3502, 3524
MaeII	ACGT	1 cut(s)	140
MfeI	CAATTG	5 cut(s)	896, 1389, 2119, 2475, 2691
MflI	RGATCY	4 cut(s)	1455, 2391, 2909, 3395
MhlI	GDGCHC	4 cut(s)	87, 1062, 3489, 3674
MlsI	TGGCCA	1 cut(s)	2560
MluNI	TGGCCA	1 cut(s)	2560
MmeI	TCCRAC	6 cut(s)	244, 303, 1023, 1170, 2311, 3390
Mox20I	TGGCCA	1 cut(s)	2560
Mph1103I	ATGCAT	2 cut(s)	3427, 3517
MroI	TCCGGA	1 cut(s)	2912
MroNI	GCCGGC	1 cut(s)	606
MroXI	GAANNNNTTC	3 cut(s)	1442, 1769, 2087
MscI	TGGCCA	1 cut(s)	2560
MslI	CAYNNNNRTG	4 cut(s)	2033, 2592, 3246, 3667
Msp20I	TGGCCA	1 cut(s)	2560
MspA1I	CMGCKG	4 cut(s)	619, 1103, 1964, 3495
MunI	CAATTG	5 cut(s)	896, 1389, 2119, 2475, 2691
Mva1269I	GAATGC	2 cut(s)	1599, 3641
MvaI	CCWGG	3 cut(s)	1568, 1898, 2195
NaeI	GCCGGC	1 cut(s)	608
NciI	CCSGG	8 cut(s)	479, 511, 738, 739, 799, 2396, 3625, 3686
NcoI	CCATGG	1 cut(s)	402
NgoMIV	GCCGGC	1 cut(s)	606
NmeAIII	GCCGAG	5 cut(s)	270, 438, 582, 694, 2590
NmuCI	GTSAC	6 cut(s)	220, 285, 494, 550, 1786, 2312
NsiI	ATGCAT	2 cut(s)	3427, 3517
NspI	RCATGY	3 cut(s)	228, 2359, 3734
OliI	CACNNNNGTG	1 cut(s)	3667
PaeR7I	CTCGAG	2 cut(s)	650, 866
PagI	TCATGA	1 cut(s)	483
PasI	CCCWGGG	1 cut(s)	1897
PceI	AGGCCT	2 cut(s)	2570, 3697
PciI	ACATGT	1 cut(s)	3730
PciSI	GCTCTTC	1 cut(s)	3167
PcsI	WCGNNNNNNNCGW	1 cut(s)	3437
PctI	GAATGC	2 cut(s)	1599, 3641
PdiI	GCCGGC	1 cut(s)	608
PdmI	GAANNNNTTC	3 cut(s)	1442, 1769, 2087
PflFI	GACNNNGTC	2 cut(s)	239, 251
PflMI	CCANNNNNTGG	2 cut(s)	1876, 2258
PfoI	TCCNGGA	1 cut(s)	1566
PpuMI	RGGWCCY	3 cut(s)	151, 368, 1307
PscI	ACATGT	1 cut(s)	3730
Psp124BI	GAGCTC	2 cut(s)	87, 3489
Psp5II	RGGWCCY	3 cut(s)	151, 368, 1307
Psp6I	CCWGG	3 cut(s)	1566, 1896, 2193
PspEI	GGTNACC	2 cut(s)	533, 550
PspFI	CCCAGC	2 cut(s)	1099, 1960
PspGI	CCWGG	3 cut(s)	1566, 1896, 2193
PspPPI	RGGWCCY	3 cut(s)	151, 368, 1307
PspXI	VCTCGAGB	2 cut(s)	650, 866
PsrI	GAACNNNNNNTAC	2 cut(s)	2759, 2791
PstI	CTGCAG	1 cut(s)	3669
PsuI	RGATCY	4 cut(s)	1455, 2391, 2909, 3395
PsyI	GACNNNGTC	2 cut(s)	239, 251
PvuII	CAGCTG	3 cut(s)	619, 1103, 1964
RsaI	GTAC	8 cut(s)	208, 329, 842, 2680, 2777, 2975, 3113, 3651
RsaNI	GTAC	8 cut(s)	207, 328, 841, 2679, 2776, 2974, 3112, 3650
RseI	CAYNNNNRTG	4 cut(s)	2033, 2592, 3246, 3667
SacI	GAGCTC	2 cut(s)	87, 3489
SapI	GCTCTTC	1 cut(s)	3167
ScaI	AGTACT	1 cut(s)	3651
SduI	GDGCHC	4 cut(s)	87, 1062, 3489, 3674
SfaNI	GCATC	4 cut(s)	2034, 2408, 3502, 3524
SfcI	CTRYAG	3 cut(s)	2923, 3460, 3665
Sfr274I	CTCGAG	2 cut(s)	650, 866
SlaI	CTCGAG	2 cut(s)	650, 866
SmaI	CCCGGG	1 cut(s)	739
SmiMI	CAYNNNNRTG	4 cut(s)	2033, 2592, 3246, 3667
SmlI	CTYRAG	6 cut(s)	650, 866, 1844, 2423, 3219, 3434
SmoI	CTYRAG	6 cut(s)	650, 866, 1844, 2423, 3219, 3434
SpeI	ACTAGT	1 cut(s)	1049
SseBI	AGGCCT	2 cut(s)	2570, 3697
SsiI	CCGC	9 cut(s)	99, 228, 294, 560, 1536, 1577, 2099, 2803, 3495
SspI	AATATT	1 cut(s)	2706
SstI	GAGCTC	2 cut(s)	87, 3489
StuI	AGGCCT	2 cut(s)	2570, 3697
StyI	CCWWGG	2 cut(s)	402, 888
TaiI	ACGT	1 cut(s)	143
TaqII	GACCGA	3 cut(s)	229, 241, 602
TatI	WGTACW	6 cut(s)	206, 2678, 2775, 2973, 3111, 3649
TauI	GCSGC	2 cut(s)	1538, 2101
TseFI	GTSAC	6 cut(s)	220, 285, 494, 550, 1786, 2312
TseI	GCWGC	9 cut(s)	707, 1339, 1633, 1748, 2613, 2622, 2687, 2714, 3638
Tsp45I	GTSAC	6 cut(s)	220, 285, 494, 550, 1786, 2312
TspDTI	ATGAA	7 cut(s)	1487, 1630, 1758, 1962, 2661, 3690, 3782
TspGWI	ACGGA	1 cut(s)	3524
TspMI	CCCGGG	1 cut(s)	737
Tth111I	GACNNNGTC	2 cut(s)	239, 251
Van91I	CCANNNNNTGG	2 cut(s)	1876, 2258
VneI	GTGCAC	1 cut(s)	3670
XagI	CCTNNNNNAGG	2 cut(s)	1251, 2058
XceI	RCATGY	3 cut(s)	228, 2359, 3734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2844
XhoI	CTCGAG	2 cut(s)	650, 866
XmaI	CCCGGG	1 cut(s)	737
XmiI	GTMKAC	3 cut(s)	2922, 2939, 3459
XmnI	GAANNNNTTC	3 cut(s)	1442, 1769, 2087
ZrmI	AGTACT	1 cut(s)	3651
Zsp2I	ATGCAT	2 cut(s)	3427, 3517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.