Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009445

Physical Location & Seq

Genomic Coordinates Forward (+)

33234847 .. 33237929

Gene Structure 3083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1228500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCGTCTTTAAGGAACGCCGTTAGCCGACGGGCTCACAAGGAGCGAGCTCAACCGGAATCGAGGAAAAAATTTGGGCTTCTTGAAAAGCATAAGGACTATGTTGAGCGTGCGAAAGCGTATCACAAAAAGGAGGAGACTTTACGGATACTGAAGCAGAAAGCCTTCTACAGAAACCCAGATGAGTTCAACTTCAAGATGATCAAGACACGAACTGTTAATGGAGTTCATAAATTAGAGAGTCAGGCAAACAAGTACACTCCAGAAGAGCTCATGCTTATGAAGACCCAAGATATTGGATACATATTTCAGAAAGTGCAGAGTGAGAAAAAGAAAATTGAAAAGTTAAATGCAACGCTGCACTCTCTTGATAATCGGCCTTCAAGTAGACACGTTTACTTTGCCGAAGACAGACTGGATATGGTGAAAGACCATTTTCACCATTTTTCGGTTCTTTGTTGTCCCTTATTATCCACAGAGGAGGCTAGAGAAATTCAATCACATTCAAGAAGTGGAAAAATGCCGGTTTCTGAGGACATTCCTGATCATATAAAAAGGAAAACAGCTGGTTCCTACAGAGAGCTTGAAGCAAGGAGTAACAGAGTCAATGAGTTGGAGAAAATCTATATGGATATGGCAATGCAGAAGGAATTAAAGAAAAAGGGTAAAAAACGCAAACTATGTGAAGATGAGATTGTCTCCCCAACATCCAACCCTGTATTCAAGTGGCGGGCAGAGCGGAAGCGAATGAGCCTGCTAGTGACATCTAGGCCCTGGAAAAGAAGAAGTACGGACCTTATGTACCGGAAATTTTGTCATCGTTATTATGTCATCGTTATGAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Utp11

Protein Analysis

283

Amino Acids

33.71

Weight (kDa)

9.92

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp11	PF03998	10 - 249	1.5e-61	Utp11 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60360
fragaria_vesca	FvH4_3g21660
malus_domestica	MD11G1228500.v1.1 MD11G1228700.v1.1 MD15G1425000.v1.1
prunus_persica	Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.8G106900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037141
rosa_laevigata	RLG00000033753
rosa_multiflora	Rmu_ssc0000448.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043840
rosa_rugosa	Rorug05G0161000 Rorug05G0161100
rosa_samantha	Rh5AG252700 Rh5BG254600 Rh5CG287100 Rh5DG263000 Rh6CG205000
rosa_wichuraiana	Rw5G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	739
AccI	GTMKAC	1 cut(s)	388
AciI	CCGC	2 cut(s)	730, 739
AcsI	RAATTY	4 cut(s)	71, 492, 809, 841
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	3 cut(s)	257, 790, 803
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	9 cut(s)	86, 190, 196, 341, 384, 497, 507, 587, 724
AjnI	CCWGG	1 cut(s)	773
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AluBI	AGCT	4 cut(s)	50, 271, 566, 583
AluI	AGCT	4 cut(s)	50, 271, 566, 583
Alw21I	GWGCWC	2 cut(s)	52, 273
Alw26I	GTCTC	2 cut(s)	131, 703
AoxI	GGCC	2 cut(s)	377, 770
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	4 cut(s)	71, 492, 809, 841
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	771, 793
AsuHPI	GGTGA	2 cut(s)	431, 436
AvaII	GGWCC	1 cut(s)	793
BanII	GRGCYC	3 cut(s)	37, 52, 273
BbsI	GAAGAC	2 cut(s)	290, 414
Bbv12I	GWGCWC	2 cut(s)	52, 273
BbvI	GCAGC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	775
BciVI	GTATCC	2 cut(s)	141, 293
BclI	TGATCA	2 cut(s)	201, 544
BcoDI	GTCTC	2 cut(s)	131, 703
BfaI	CTAG	3 cut(s)	486, 758, 768
BfmI	CTRYAG	2 cut(s)	169, 574
BfuI	GTATCC	2 cut(s)	141, 293
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	775
Bme18I	GGWCC	1 cut(s)	793
BmgT120I	GGNCC	2 cut(s)	771, 793
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	1 cut(s)	775
BpiI	GAAGAC	2 cut(s)	290, 414
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
BpmI	CTGGAG	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	773
BsaWI	WCCGGW	2 cut(s)	55, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	775
BseDI	CCNNGG	1 cut(s)	773
BseGI	GGATG	1 cut(s)	707
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	2 cut(s)	149, 494
BseXI	GCAGC	1 cut(s)	345
BsgI	GTGCAG	2 cut(s)	338, 344
BshFI	GGCC	2 cut(s)	379, 772
BsiHKAI	GWGCWC	2 cut(s)	52, 273
BsiSI	CCGG	3 cut(s)	56, 524, 805
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	131, 703
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	379, 772
Bsp1286I	GDGCHC	3 cut(s)	37, 52, 273
Bsp143I	GATC	2 cut(s)	201, 544
BspACI	CCGC	2 cut(s)	730, 739
BspANI	GGCC	2 cut(s)	379, 772
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	571
BspQI	GCTCTTC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	739
BsrDI	GCAATG	1 cut(s)	645
BsrFI	RCCGGY	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	773
BssMI	GATC	2 cut(s)	201, 544
Bst2UI	CCWGG	1 cut(s)	775
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	4 cut(s)	48, 111, 732, 755
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	707
BstKTI	GATC	2 cut(s)	204, 547
BstMAI	GTCTC	2 cut(s)	131, 703
BstMBI	GATC	2 cut(s)	201, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	736
BstNI	CCWGG	1 cut(s)	775
BstSCI	CCNGG	1 cut(s)	773
BstSFI	CTRYAG	2 cut(s)	169, 574
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	2 cut(s)	290, 414
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuI	GTATCC	2 cut(s)	141, 293
BsuRI	GGCC	2 cut(s)	379, 772
BtsCI	GGATG	1 cut(s)	707
Cac8I	GCNNGC	4 cut(s)	48, 111, 732, 755
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	771, 793
Csp6I	GTAC	3 cut(s)	256, 789, 802
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	3 cut(s)	256, 789, 802
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	2 cut(s)	203, 546
DpnII	GATC	2 cut(s)	201, 544
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	2 cut(s)	50, 271
Eco24I	GRGCYC	3 cut(s)	37, 52, 273
Eco47I	GGWCC	1 cut(s)	793
Eco53kI	GAGCTC	2 cut(s)	50, 271
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	2 cut(s)	50, 271
EcoO109I	RGGNCCY	1 cut(s)	771
EcoRII	CCWGG	1 cut(s)	773
EcoT38I	GRGCYC	3 cut(s)	37, 52, 273
FaeI	CATG	1 cut(s)	277
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	1 cut(s)	273
FauI	CCCGC	1 cut(s)	723
FbaI	TGATCA	2 cut(s)	201, 544
FblI	GTMKAC	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	1 cut(s)	694
FriOI	GRGCYC	3 cut(s)	37, 52, 273
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	3 cut(s)	486, 758, 768
GluI	GCNGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	379, 772
HapII	CCGG	3 cut(s)	56, 524, 805
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	3 cut(s)	59, 241, 603
HpaII	CCGG	3 cut(s)	56, 524, 805
HphI	GGTGA	2 cut(s)	431, 436
Hpy166II	GTNNAC	3 cut(s)	258, 389, 397
Hpy188I	TCNGA	2 cut(s)	312, 532
Hpy188III	TCNNGA	7 cut(s)	83, 196, 205, 263, 368, 507, 542
Hpy8I	GTNNAC	3 cut(s)	258, 389, 397
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	3 cut(s)	175, 390, 640
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	4 cut(s)	319, 353, 361, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	736
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	277
Ksp22I	TGATCA	2 cut(s)	201, 544
Kzo9I	GATC	2 cut(s)	201, 544
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	1 cut(s)	345
MaeI	CTAG	3 cut(s)	486, 758, 768
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	2 cut(s)	596, 760
MalI	GATC	2 cut(s)	203, 546
MbiI	CCGCTC	1 cut(s)	739
MboI	GATC	2 cut(s)	201, 544
MboII	GAAGA	5 cut(s)	278, 295, 419, 698, 795
MhlI	GDGCHC	3 cut(s)	37, 52, 273
MluCI	AATT	7 cut(s)	71, 233, 336, 492, 650, 809, 841
MlyI	GAGTC	2 cut(s)	250, 612
MmeI	TCCRAC	2 cut(s)	594, 735
MnlI	CCTC	5 cut(s)	57, 127, 472, 475, 526
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	5 cut(s)	11, 219, 347, 653, 847
MslI	CAYNNNNRTG	2 cut(s)	278, 836
MspA1I	CMGCKG	1 cut(s)	566
MspI	CCGG	3 cut(s)	56, 524, 805
MspR9I	CCNGG	1 cut(s)	775
MvaI	CCWGG	1 cut(s)	775
MwoI	GCNNNNNNNGC	1 cut(s)	736
NdeII	GATC	2 cut(s)	201, 544
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	2 cut(s)	249, 611
PpsI	GAGTC	2 cut(s)	249, 611
Psp124BI	GAGCTC	2 cut(s)	52, 273
Psp6I	CCWGG	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	773
PspN4I	GGNNCC	1 cut(s)	571
PspPI	GGNCC	2 cut(s)	771, 793
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	257, 790, 803
RsaNI	GTAC	3 cut(s)	256, 789, 802
RseI	CAYNNNNRTG	2 cut(s)	278, 836
SacI	GAGCTC	2 cut(s)	52, 273
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	5 cut(s)	11, 219, 347, 653, 847
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	2 cut(s)	201, 544
Sau96I	GGNCC	2 cut(s)	771, 793
SchI	GAGTC	2 cut(s)	250, 612
ScrFI	CCNGG	1 cut(s)	775
SduI	GDGCHC	3 cut(s)	37, 52, 273
SetI	ASST	6 cut(s)	52, 273, 396, 568, 585, 798
SfcI	CTRYAG	2 cut(s)	169, 574
SinI	GGWCC	1 cut(s)	793
SmiMI	CAYNNNNRTG	2 cut(s)	278, 836
Sse9I	AATT	7 cut(s)	71, 233, 336, 492, 650, 809, 841
SsiI	CCGC	2 cut(s)	730, 739
SspMI	CTAG	3 cut(s)	486, 758, 768
SstI	GAGCTC	2 cut(s)	52, 273
StyD4I	CCNGG	1 cut(s)	773
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	62
TasI	AATT	7 cut(s)	71, 233, 336, 492, 650, 809, 841
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	5 cut(s)	11, 219, 347, 653, 847
Tru9I	TTAA	5 cut(s)	11, 219, 347, 653, 847
TseFI	GTSAC	1 cut(s)	760
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	760
TspDTI	ATGAA	2 cut(s)	218, 296
TspGWI	ACGGA	2 cut(s)	160, 806
VpaK11BI	GGWCC	1 cut(s)	793
XapI	RAATTY	4 cut(s)	71, 492, 809, 841
XmiI	GTMKAC	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	3 cut(s)	486, 758, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.