Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009445

Physical Location & Seq

Genomic Coordinates Reverse (-)

52608912 .. 52614171

Gene Structure 5260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1425000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCGTCTTTAAGGAACGCCGTTAGCCGACGGGCTCACAAGGAGCGAGCTCAACCGGAATCGAGGAAAAAATTTGGGCTTCTTGAAAAGCATAAGGACTATGTTGAGCGTGCGAAAGCATATCACAAAAAGGAGGAGACTTTACGGATACTGAAGCAGAAAGCCTTCTACAGAAACCCAGATGAGTTCAACTTCAAGATGATCAAGACACGAACTGTTAATGGAGTCCATAAATTAGAGAGTCAGGCAAACAAGTACACTCCAGAAGAGCTCATGCTTATGAAGACCCAAGATATTGGATACATATTTCAGAAAGTGCAGAGTGAGAAAAAGAAAATTGAAAAGTTAACTGCGACACTGCACTCTCTTGATAATCGGCCTTCAAGTAGACACGTTTACTTTGCCGAAGACAGAGAGGAGGCTAGAGAAATTCAATCACGTTCAAGAAGTGGAAAAATGCCAGTTTCTGAGGACATTCCTGATCATATAAAAAGGAAAACAGCTGGTTCCTACAGAGAGCTCGAAGCAAGGAGTAACAGAGTCAATGAGTTGGAGAAAATCTATATGGATATGGCAATGCAGAAGGAATTAAAGAAAAAGGGTAAAAAACGCAAACTATGTGAAGATGAGATTGTCTCCCCATCATCCAACCTTGTATTCAAGTGGCGGGCAGAGCGGAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Utp11

Protein Analysis

229

Amino Acids

27.12

Weight (kDa)

9.97

Isoelectric Point (pI)

67.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp11	PF03998	10 - 228	3.1e-58	Utp11 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60360
fragaria_vesca	FvH4_3g21660
malus_domestica	MD11G1228500.v1.1 MD11G1228700.v1.1 MD15G1425000.v1.1
prunus_persica	Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.8G106900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037141
rosa_laevigata	RLG00000033753
rosa_multiflora	Rmu_ssc0000448.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043840
rosa_rugosa	Rorug05G0161000 Rorug05G0161100
rosa_samantha	Rh5AG252700 Rh5BG254600 Rh5CG287100 Rh5DG263000 Rh6CG205000
rosa_wichuraiana	Rw5G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	388
AciI	CCGC	2 cut(s)	667, 676
AcsI	RAATTY	2 cut(s)	71, 429
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	8 cut(s)	86, 190, 196, 341, 384, 434, 444, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AluBI	AGCT	4 cut(s)	50, 271, 503, 520
AluI	AGCT	4 cut(s)	50, 271, 503, 520
Alw21I	GWGCWC	3 cut(s)	52, 273, 522
Alw26I	GTCTC	2 cut(s)	131, 640
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	377
ApoI	RAATTY	2 cut(s)	71, 429
Asp700I	GAANNNNTTC	1 cut(s)	164
BanII	GRGCYC	4 cut(s)	37, 52, 273, 522
BbsI	GAAGAC	2 cut(s)	290, 414
Bbv12I	GWGCWC	3 cut(s)	52, 273, 522
BccI	CCATC	1 cut(s)	649
BceAI	ACGGC	1 cut(s)	5
BciVI	GTATCC	2 cut(s)	141, 293
BclI	TGATCA	2 cut(s)	201, 481
BcoDI	GTCTC	2 cut(s)	131, 640
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	2 cut(s)	169, 511
BfuI	GTATCC	2 cut(s)	141, 293
BmiI	GGNNCC	1 cut(s)	508
BpiI	GAAGAC	2 cut(s)	290, 414
BplI	GAGNNNNNCTC	2 cut(s)	620, 652
BpmI	CTGGAG	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	149, 431
BsgI	GTGCAG	2 cut(s)	338, 344
BshFI	GGCC	1 cut(s)	379
BsiHKAI	GWGCWC	3 cut(s)	52, 273, 522
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	131, 640
BsnI	GGCC	1 cut(s)	379
Bsp1286I	GDGCHC	4 cut(s)	37, 52, 273, 522
Bsp143I	GATC	2 cut(s)	201, 481
BspACI	CCGC	2 cut(s)	667, 676
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	508
BspQI	GCTCTTC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	461
BssMI	GATC	2 cut(s)	201, 481
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	48, 111, 669
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	644
BstKTI	GATC	2 cut(s)	204, 484
BstMAI	GTCTC	2 cut(s)	131, 640
BstMBI	GATC	2 cut(s)	201, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstSFI	CTRYAG	2 cut(s)	169, 511
BstV2I	GAAGAC	2 cut(s)	290, 414
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuI	GTATCC	2 cut(s)	141, 293
BsuRI	GGCC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	644
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	3 cut(s)	48, 111, 669
CaiI	CAGNNNCTG	1 cut(s)	467
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	274
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	2 cut(s)	203, 483
DpnII	GATC	2 cut(s)	201, 481
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	3 cut(s)	50, 271, 520
Eco24I	GRGCYC	4 cut(s)	37, 52, 273, 522
Eco53kI	GAGCTC	3 cut(s)	50, 271, 520
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	3 cut(s)	50, 271, 520
EcoT38I	GRGCYC	4 cut(s)	37, 52, 273, 522
FaeI	CATG	1 cut(s)	277
FatI	CATG	1 cut(s)	273
FauI	CCCGC	1 cut(s)	660
FbaI	TGATCA	2 cut(s)	201, 481
FblI	GTMKAC	1 cut(s)	388
FokI	GGATG	1 cut(s)	631
FriOI	GRGCYC	4 cut(s)	37, 52, 273, 522
FspBI	CTAG	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HinfI	GANTC	4 cut(s)	59, 225, 241, 540
HpaI	GTTAAC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	4 cut(s)	258, 348, 389, 397
Hpy188I	TCNGA	2 cut(s)	312, 469
Hpy188III	TCNNGA	7 cut(s)	83, 196, 205, 263, 368, 444, 479
Hpy8I	GTNNAC	4 cut(s)	258, 348, 389, 397
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	3 cut(s)	175, 390, 577
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	393, 439
HpyCH4V	TGCA	3 cut(s)	319, 361, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	2 cut(s)	393, 439
Hsp92II	CATG	1 cut(s)	277
Ksp22I	TGATCA	2 cut(s)	201, 481
KspAI	GTTAAC	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	201, 481
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	7 cut(s)	69, 192, 230, 276, 474, 489, 492
MaeI	CTAG	1 cut(s)	423
MaeII	ACGT	2 cut(s)	393, 439
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	2 cut(s)	203, 483
MbiI	CCGCTC	1 cut(s)	676
MboI	GATC	2 cut(s)	201, 481
MboII	GAAGA	4 cut(s)	278, 295, 419, 635
MhlI	GDGCHC	4 cut(s)	37, 52, 273, 522
MluCI	AATT	5 cut(s)	71, 233, 336, 429, 587
MlyI	GAGTC	3 cut(s)	234, 250, 549
MmeI	TCCRAC	2 cut(s)	531, 672
MnlI	CCTC	5 cut(s)	57, 127, 409, 412, 463
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	5 cut(s)	11, 219, 347, 590, 685
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	673
NdeII	GATC	2 cut(s)	201, 481
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	508
PciSI	GCTCTTC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	59
PleI	GAGTC	3 cut(s)	233, 249, 548
PpsI	GAGTC	3 cut(s)	233, 249, 548
Psp124BI	GAGCTC	3 cut(s)	52, 273, 522
PspN4I	GGNNCC	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	278
SacI	GAGCTC	3 cut(s)	52, 273, 522
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	5 cut(s)	11, 219, 347, 590, 685
Sau3AI	GATC	2 cut(s)	201, 481
SchI	GAGTC	3 cut(s)	234, 250, 549
SduI	GDGCHC	4 cut(s)	37, 52, 273, 522
SetI	ASST	7 cut(s)	52, 273, 396, 442, 505, 522, 654
SfcI	CTRYAG	2 cut(s)	169, 511
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	5 cut(s)	71, 233, 336, 429, 587
SsiI	CCGC	2 cut(s)	667, 676
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	3 cut(s)	52, 273, 522
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	396, 442
TaqI	TCGA	2 cut(s)	62, 522
TasI	AATT	5 cut(s)	71, 233, 336, 429, 587
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	5 cut(s)	11, 219, 347, 590, 685
Tru9I	TTAA	5 cut(s)	11, 219, 347, 590, 685
TscAI	CASTG	1 cut(s)	363
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	363
XapI	RAATTY	2 cut(s)	71, 429
XmiI	GTMKAC	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.