Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009445

Physical Location & Seq

Genomic Coordinates Reverse (-)

14729624 .. 14733841

Gene Structure 4218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCGTCTCTAAGGAATGCTGTTAGCCGACGCGCCCACAAGGAGCGATCTCAACCGGAATCGAGGAAAAAATTTGGGTTTCTTGAAAAGCACAAGGACTATGTTGAGCGTGCTAAGGCGTACCACAACAAGGAGGAGACTTTACGGAGGCTGAAGGAAAAAGCAAGATTTCGAAACCCAGATGAGTTCGACTTCAAGATGATCAACAGTCGAACTGTTGATGGAGTCCATAAAACAGAGGGTCAGGCAAACAAGTACACTCCTGAAGAGCTTTTGCTTATGAAGTCCCAAGATATTGGATATGTCCTGCAGAAAGTGCAGAGTGAGAAAAAGAAAATTGAAAAGATGACTGCAACTCTGCATTCACTTGATAATCGGCCTTCAAACAGACACGTTTACTTTGCTGAAGATAGGGAAGAGGCTAAAGAGCTTCAGTCACGTGGTTCAAGAGGGGAAATGTTGCCCGGTTCTCAGAGTGTTCCTGTTCATATTCGAAGGAAAACAGCAGCTTCTTATGGGGAGCTTAAAGCAAGGAGAGAAAGAGTCCAAGATCTGGAGAAAGTATATATGCAGATGGCAATGCAGAAGGAGTTAAAGAAAAAGGGGAAGAAACGCAAACTCCGTGAAGATGAGATGGTGAATCCAACATCCGAACCTGTATTCAAGTGGCGGGCAGAGCGGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Utp11

Protein Analysis

230

Amino Acids

27.18

Weight (kDa)

10.08

Isoelectric Point (pI)

72.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp11	PF03998	10 - 229	5.6e-59	Utp11 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60360
fragaria_vesca	FvH4_3g21660
malus_domestica	MD11G1228500.v1.1 MD11G1228700.v1.1 MD15G1425000.v1.1
prunus_persica	Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.4G200900_v2.0.a1 Prupe.8G106900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0037141
rosa_laevigata	RLG00000033753
rosa_multiflora	Rmu_ssc0000448.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043840
rosa_rugosa	Rorug05G0161000 Rorug05G0161100
rosa_samantha	Rh5AG252700 Rh5BG254600 Rh5CG287100 Rh5DG263000 Rh6CG205000
rosa_wichuraiana	Rw5G023320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	553
AccBSI	CCGCTC	1 cut(s)	679
AccII	CGCG	1 cut(s)	33
AciI	CCGC	2 cut(s)	670, 679
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	4 cut(s)	173, 285, 416, 426
AcvI	CACGTG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	122, 257
AfiI	CCNNNNNNNGG	2 cut(s)	130, 553
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	6 cut(s)	86, 196, 341, 384, 447, 664
AluBI	AGCT	4 cut(s)	271, 430, 509, 523
AluI	AGCT	4 cut(s)	271, 430, 509, 523
Alw26I	GTCTC	2 cut(s)	12, 131
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	465
AsuHPI	GGTGA	1 cut(s)	649
AsuII	TTCGAA	2 cut(s)	172, 493
BbrPI	CACGTG	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	3 cut(s)	215, 568, 628
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	12, 131
BfmI	CTRYAG	1 cut(s)	308
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	575
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	2 cut(s)	172, 493
BpuMI	CCSGG	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	440
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 553
Bse3DI	GCAATG	1 cut(s)	585
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	2 cut(s)	130, 553
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	518
BsgI	GTGCAG	1 cut(s)	338
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	379
BsiSI	CCGG	2 cut(s)	56, 465
BslFI	GGGAC	1 cut(s)	271
BslI	CCNNNNNNNGG	2 cut(s)	130, 553
BsmAI	GTCTC	2 cut(s)	12, 131
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	271
BsmI	GAATGC	2 cut(s)	22, 361
BsnI	GGCC	1 cut(s)	379
Bsp119I	TTCGAA	2 cut(s)	172, 493
Bsp143I	GATC	3 cut(s)	47, 201, 550
BspACI	CCGC	2 cut(s)	670, 679
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	312
BspQI	GCTCTTC	1 cut(s)	261
BspT104I	TTCGAA	2 cut(s)	172, 493
BsrBI	CCGCTC	1 cut(s)	679
BsrDI	GCAATG	1 cut(s)	585
BssMI	GATC	3 cut(s)	47, 201, 550
Bst4CI	ACNGT	2 cut(s)	209, 217
Bst6I	CTCTTC	2 cut(s)	261, 411
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	440
BstBI	TTCGAA	2 cut(s)	172, 493
BstC8I	GCNNGC	2 cut(s)	111, 672
BstDEI	CTNAG	3 cut(s)	11, 114, 471
BstF5I	GGATG	1 cut(s)	647
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	3 cut(s)	50, 204, 553
BstMAI	GTCTC	2 cut(s)	12, 131
BstMBI	GATC	3 cut(s)	47, 201, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 676
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	647
Cac8I	GCNNGC	2 cut(s)	111, 672
CfoI	GCGC	1 cut(s)	35
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	121, 256
CviJI	RGCY	8 cut(s)	27, 151, 271, 379, 422, 430, 509, 523
CviKI_1	RGCY	8 cut(s)	27, 151, 271, 379, 422, 430, 509, 523
CviQI	GTAC	2 cut(s)	121, 256
DdeI	CTNAG	3 cut(s)	11, 114, 471
DpnI	GATC	3 cut(s)	49, 203, 552
DpnII	GATC	3 cut(s)	47, 201, 550
Eam1104I	CTCTTC	2 cut(s)	261, 411
EarI	CTCTTC	2 cut(s)	261, 411
Eco57I	CTGAAG	4 cut(s)	173, 285, 416, 426
Eco72I	CACGTG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	12
FaiI	YATR	9 cut(s)	102, 231, 281, 303, 489, 516, 565, 567, 569
FaqI	GGGAC	1 cut(s)	271
FauI	CCCGC	1 cut(s)	663
FbaI	TGATCA	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	1 cut(s)	634
Fsp4HI	GCNGC	1 cut(s)	507
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	2 cut(s)	56, 465
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	59, 225, 543, 640
HpaII	CCGG	2 cut(s)	56, 465
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	2 cut(s)	258, 397
Hpy188I	TCNGA	2 cut(s)	474, 652
Hpy188III	TCNNGA	5 cut(s)	83, 196, 263, 447, 554
Hpy8I	GTNNAC	2 cut(s)	258, 397
Hpy99I	CGWCG	1 cut(s)	33
HpyAV	CCTTC	4 cut(s)	148, 390, 489, 580
HpyCH4III	ACNGT	2 cut(s)	209, 217
HpyCH4IV	ACGT	2 cut(s)	393, 439
HpyCH4V	TGCA	6 cut(s)	310, 319, 353, 361, 571, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 676
HpyF3I	CTNAG	3 cut(s)	11, 114, 471
HpySE526I	ACGT	2 cut(s)	393, 439
HspAI	GCGC	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	47, 201, 550
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	43, 520
LpnPI	CCDG	9 cut(s)	69, 192, 230, 276, 320, 478, 495, 539, 669
Lsp1109I	GCAGC	1 cut(s)	518
MaeII	ACGT	2 cut(s)	393, 439
MaeIII	GTNAC	1 cut(s)	435
MalI	GATC	3 cut(s)	49, 203, 552
MbiI	CCGCTC	1 cut(s)	679
MboI	GATC	3 cut(s)	47, 201, 550
MboII	GAAGA	5 cut(s)	278, 419, 428, 619, 638
MflI	RGATCY	1 cut(s)	550
MluCI	AATT	2 cut(s)	71, 336
MlyI	GAGTC	2 cut(s)	234, 552
MmeI	TCCRAC	1 cut(s)	668
MnlI	CCTC	6 cut(s)	57, 127, 141, 232, 412, 443
MseI	TTAA	2 cut(s)	525, 593
MspI	CCGG	2 cut(s)	56, 465
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	2 cut(s)	22, 361
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	316, 676
NciI	CCSGG	1 cut(s)	465
NdeII	GATC	3 cut(s)	47, 201, 550
NmuCI	GTSAC	1 cut(s)	435
NspV	TTCGAA	2 cut(s)	172, 493
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PctI	GAATGC	2 cut(s)	22, 361
PfeI	GAWTC	2 cut(s)	59, 640
PflMI	CCANNNNNTGG	1 cut(s)	553
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	2 cut(s)	233, 551
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
PpsI	GAGTC	2 cut(s)	233, 551
Ppu21I	YACGTR	1 cut(s)	440
PspCI	CACGTG	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	2 cut(s)	122, 257
RsaNI	GTAC	2 cut(s)	121, 256
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	525, 593
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	3 cut(s)	47, 201, 550
SchI	GAGTC	2 cut(s)	234, 552
ScrFI	CCNGG	1 cut(s)	465
SetI	ASST	7 cut(s)	273, 396, 432, 442, 511, 525, 658
SfcI	CTRYAG	1 cut(s)	308
SfuI	TTCGAA	2 cut(s)	172, 493
Sse9I	AATT	2 cut(s)	71, 336
SsiI	CCGC	2 cut(s)	670, 679
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	209, 217
TaiI	ACGT	2 cut(s)	396, 442
TaqI	TCGA	5 cut(s)	62, 172, 189, 211, 493
TasI	AATT	2 cut(s)	71, 336
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	59, 640
Tru1I	TTAA	2 cut(s)	525, 593
Tru9I	TTAA	2 cut(s)	525, 593
TseFI	GTSAC	1 cut(s)	435
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	435
TspDTI	ATGAA	2 cut(s)	296, 476
TspGWI	ACGGA	2 cut(s)	160, 611
Van91I	CCANNNNNTGG	1 cut(s)	553
XapI	RAATTY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.