AT3G61820

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015794
Physical Location & Seq
Reverse (-)
22879720 .. 22881775
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61820.1

Sequence Viewer

Length: 1452 bp
ATGGAGCGCAAAGTCTTGAATACCCTCGCCTTCTCCGTCTTTGCCGTTCTCTTCTTCACCTCCTCTGCTTCTTCCCAATACCAAACTCTTGTCGTCAACACTCTTCCTTCTTCCGCAACACTCTCATGGCCCGAGTCCGAATCTTTAACTGATGAATCTTTATCCGAGTCCACAACTTCACTCTCTGTCCATTTATCACACGTGGATGCTCTGTCTTCCTTCTCCGACGCATCTCCGGCGGACCTCTTCAACCTCCGTCTCCAACGAGACTCTCTCCGCGTCAAATCTATTACCAGCCTCGCCGCCGTATCAACCGGACGAAATGCTACGAAAAGAACTCCACGTACCGCCGGTGGATTTAGCGGCGCAGTTATCTCTGGCCTCTCACAAGGAAGCGGAGAGTATTTTATGAGGTTAGGTGTTGGAACTCCGGCGACTAACGTTTACATGGTGCTCGACACAGGAAGCGACGTCGTTTGGCTCCAATGCTCTCCTTGCAAAGCCTGTTACAACCAGACCGACGCCATTTTTGACCCGAAGAAATCCAAAACTTTCGCCACCGTACCATGTGGATCTCGCCTTTGCCGGAGACTAGACGACTCGTCGGAATGTGTCACTCGTCGAAGCAAGACTTGTCTCTACCAAGTATCGTACGGTGACGGATCATTCACCGAAGGAGATTTCTCAACTGAAACGCTGACGTTTCATGGAGCGCGTGTTGATCACGTGCCGTTAGGATGCGGTCACGATAACGAAGGCTTGTTCGTTGGTGCGGCTGGGCTTTTGGGCTTGGGCCGTGGTGGGTTATCTTTCCCGTCGCAGACGAAAAACCGTTATAACGGAAAATTCTCTTACTGTTTGGTTGACCGGACGAGTTCCGGTTCTTCTTCTAAACCACCGTCAACAATCGTGTTTGGAAACGCCGCCGTTCCGAAAACCTCTGTTTTCACGCCGTTACTAACGAACCCGAAACTCGACACGTTTTATTACTTGCAGCTTCTTGGAATCAGCGTTGGTGGTTCGCGCGTTCCCGGCGTTTCGGAGTCGCAGTTCAAGCTTGACGCCACCGGAAACGGCGGTGTCATTATAGATTCCGGTACTTCGGTTACTCGGCTGACGCAACCTGCTTACGTAGCGCTTAGAGACGCTTTTAGACTTGGTGCTACGAAGCTGAAACGTGCTCCATCGTATTCTTTGTTCGACACGTGTTTTGATCTCTCGGGAATGACGACTGTGAAGGTTCCGACGGTTGTGTTTCATTTCGGAGGCGGAGAGGTTTCGCTTCCGGCGAGTAATTATCTGATCCCGGTTAACACTGAAGGACGGTTCTGTTTTGCGTTTGCCGGAACTATGGGGAGTTTGTCAATCATTGGAAACATACAGCAACAAGGTTTCCGGGTCGCTTATGACTTGGTCGGGTCACGGGTCGGGTTTTTGTCTCGCGCGTGTTAG

Protein Analysis

483

Amino Acids

51.46

Weight (kDa)

8.75

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 134 - 186 8.8e-07 Eukaryotic aspartyl protease
TAXi_N PF14543 135 - 307 1.9e-53 Xylanase inhibitor N-terminal
Asp PF00026 200 - 478 1.9e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 329 - 478 6e-33 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015794)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01300 AT3G61820
fragaria_vesca FvH4_7g16670
malus_domestica MD01G1082200.v1.1 MD07G1150600.v1.1
prunus_persica Prupe.2G189400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359821
rosa_laevigata RLG00000027851
rosa_roxburghii Rroxscaffold_4G00296790
rosa_rugosa Rorug01G0272900
rosa_samantha Rh1AG286900 Rh1BG252700 Rh1CG269900 Rh1DG281700
rosa_wichuraiana Rw1G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 837
AatII GACGTC 1 cut(s) 474
Acc36I ACCTGC 1 cut(s) 1132
AccII CGCG 6 cut(s) 279, 715, 1024, 1026, 1443, 1445
AclI AACGTT 1 cut(s) 441
AclWI GGATC 3 cut(s) 580, 670, 1297
AcsI RAATTY 1 cut(s) 845
AcuI CTGAAG 1 cut(s) 1338
AcvI CACGTG 3 cut(s) 202, 727, 1206
AcyI GRCGYC 3 cut(s) 471, 522, 1062
AfaI GTAC 4 cut(s) 346, 564, 653, 1099
AfeI AGCGCT 1 cut(s) 1137
AflIII ACRYGT 4 cut(s) 199, 978, 1203, 1205
AgsI TTSAA 3 cut(s) 19, 250, 1054
AhdI GACNNNNNGTC 1 cut(s) 601
AloI GAACNNNNNNTCC 2 cut(s) 1034, 1066
AluBI AGCT 3 cut(s) 997, 1057, 1171
AluI AGCT 3 cut(s) 997, 1057, 1171
Alw21I GWGCWC 2 cut(s) 456, 1183
Alw26I GTCTC 6 cut(s) 261, 263, 583, 641, 1137, 1443
AlwI GGATC 3 cut(s) 580, 670, 1297
Ama87I CYCGRG 2 cut(s) 131, 1219
Aor51HI AGCGCT 1 cut(s) 1137
AoxI GGCC 3 cut(s) 128, 379, 793
ApeKI GCWGC 1 cut(s) 994
ApoI RAATTY 1 cut(s) 845
ArsI GACNNNNNNTTYG 4 cut(s) 512, 544, 1193, 1225
AspLEI GCGC 6 cut(s) 9, 368, 715, 1026, 1138, 1445
AspS9I GGNCC 3 cut(s) 129, 241, 793
AsuC2I CCSGG 3 cut(s) 1032, 1307, 1397
AsuHPI GGTGA 3 cut(s) 49, 661, 668
AvaI CYCGRG 2 cut(s) 131, 1219
AvaII GGWCC 1 cut(s) 241
BaeI ACNNNNGTAYC 2 cut(s) 1089, 1122
BbrPI CACGTG 3 cut(s) 202, 727, 1206
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 456, 1183
BbvI GCAGC 1 cut(s) 1006
BccI CCATC 1 cut(s) 1192
BceAI ACGGC 7 cut(s) 29, 290, 715, 780, 911, 937, 1090
BclI TGATCA 1 cut(s) 721
BcnI CCSGG 3 cut(s) 1032, 1307, 1397
BcoDI GTCTC 6 cut(s) 261, 263, 583, 641, 1137, 1443
BfaI CTAG 1 cut(s) 593
BfoI RGCGCY 1 cut(s) 1139
BfuAI ACCTGC 1 cut(s) 1132
BisI GCNGC 5 cut(s) 303, 364, 774, 924, 995
BlsI GCNGC 5 cut(s) 304, 365, 775, 925, 996
Bme1390I CCNGG 3 cut(s) 1032, 1307, 1397
Bme18I GGWCC 1 cut(s) 241
BmeRI GACNNNNNGTC 1 cut(s) 601
BmeT110I CYCGRG 2 cut(s) 131, 1219
BmgT120I GGNCC 3 cut(s) 129, 241, 793
BmiI GGNNCC 2 cut(s) 482, 1242
BmrFI CCNGG 3 cut(s) 1032, 1307, 1397
BmsI GCATC 3 cut(s) 196, 239, 728
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 258, 290
BpuMI CCSGG 3 cut(s) 1032, 1307, 1397
BsaAI YACGTR 5 cut(s) 202, 344, 727, 1132, 1206
BsaHI GRCGYC 3 cut(s) 471, 522, 1062
BsaJI CCNNGG 1 cut(s) 796
BsaWI WCCGGW 5 cut(s) 314, 867, 878, 1067, 1094
BsaXI ACNNNNNCTCC 4 cut(s) 702, 732, 1034, 1064
Bse118I RCCGGY 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 796
BseGI GGATG 2 cut(s) 211, 743
BseRI GAGGAG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 1006
BseYI CCCAGC 1 cut(s) 776
Bsh1236I CGCG 6 cut(s) 279, 715, 1024, 1026, 1443, 1445
BshFI GGCC 3 cut(s) 130, 381, 795
BsiHKAI GWGCWC 2 cut(s) 456, 1183
BsiHKCI CYCGRG 2 cut(s) 131, 1219
BsiWI CGTACG 1 cut(s) 651
BsmAI GTCTC 6 cut(s) 261, 263, 583, 641, 1137, 1443
BsmBI CGTCTC 2 cut(s) 263, 1137
BsnI GGCC 3 cut(s) 130, 381, 795
BsoBI CYCGRG 2 cut(s) 131, 1219
Bsp1286I GDGCHC 2 cut(s) 456, 1183
Bsp143I GATC 5 cut(s) 572, 662, 721, 1213, 1302
BspANI GGCC 3 cut(s) 130, 381, 795
BspFNI CGCG 6 cut(s) 279, 715, 1024, 1026, 1443, 1445
BspLI GGNNCC 2 cut(s) 482, 1242
BspMI ACCTGC 1 cut(s) 1132
BspPI GGATC 3 cut(s) 580, 670, 1297
BsrFI RCCGGY 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 796
BssMI GATC 5 cut(s) 572, 662, 721, 1213, 1302
BssNI GRCGYC 3 cut(s) 471, 522, 1062
Bst4CI ACNGT 8 cut(s) 562, 656, 833, 857, 900, 1234, 1249, 1326
Bst6I CTCTTC 3 cut(s) 56, 108, 251
BstACI GRCGYC 3 cut(s) 471, 522, 1062
BstBAI YACGTR 5 cut(s) 202, 344, 727, 1132, 1206
BstDEI CTNAG 1 cut(s) 1139
BstDSI CCRYGG 1 cut(s) 796
BstF5I GGATG 2 cut(s) 211, 743
BstFNI CGCG 6 cut(s) 279, 715, 1024, 1026, 1443, 1445
BstH2I RGCGCY 1 cut(s) 1139
BstHHI GCGC 6 cut(s) 9, 368, 715, 1026, 1138, 1445
BstKTI GATC 5 cut(s) 575, 665, 724, 1216, 1305
BstMAI GTCTC 6 cut(s) 261, 263, 583, 641, 1137, 1443
BstMBI GATC 5 cut(s) 572, 662, 721, 1213, 1302
BstMWI GCNNNNNNNGC 5 cut(s) 236, 495, 1032, 1054, 1133
BstSCI CCNGG 3 cut(s) 1030, 1305, 1395
BstSNI TACGTA 1 cut(s) 1132
BstUI CGCG 6 cut(s) 279, 715, 1024, 1026, 1443, 1445
BstV1I GCAGC 1 cut(s) 1006
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 3 cut(s) 130, 381, 795
BtgI CCRYGG 1 cut(s) 796
BtsCI GGATG 2 cut(s) 211, 743
BtsIMutI CAGTG 1 cut(s) 1314
BveI ACCTGC 1 cut(s) 1132
CfoI GCGC 6 cut(s) 9, 368, 715, 1026, 1138, 1445
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 3 cut(s) 129, 241, 793
CseI GACGC 6 cut(s) 236, 268, 530, 1070, 1126, 1154
Csp6I GTAC 4 cut(s) 345, 563, 652, 1098
CviAII CATG 4 cut(s) 126, 448, 567, 707
CviQI GTAC 4 cut(s) 345, 563, 652, 1098
DdeI CTNAG 1 cut(s) 1139
DpnI GATC 5 cut(s) 574, 664, 723, 1215, 1304
DpnII GATC 5 cut(s) 572, 662, 721, 1213, 1302
DriI GACNNNNNGTC 1 cut(s) 601
Eam1104I CTCTTC 3 cut(s) 56, 108, 251
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 3 cut(s) 56, 108, 251
EciI GGCGGA 2 cut(s) 254, 1284
Eco105I TACGTA 1 cut(s) 1132
Eco47I GGWCC 1 cut(s) 241
Eco47III AGCGCT 1 cut(s) 1137
Eco57I CTGAAG 1 cut(s) 1338
Eco72I CACGTG 3 cut(s) 202, 727, 1206
Eco88I CYCGRG 2 cut(s) 131, 1219
Esp3I CGTCTC 2 cut(s) 263, 1137
FaeI CATG 4 cut(s) 129, 451, 570, 710
FalI AAGNNNNNCTT 2 cut(s) 616, 648
FatI CATG 4 cut(s) 125, 447, 566, 706
FbaI TGATCA 1 cut(s) 721
Fnu4HI GCNGC 5 cut(s) 303, 364, 774, 924, 995
FokI GGATG 2 cut(s) 218, 750
Fsp4HI GCNGC 5 cut(s) 303, 364, 774, 924, 995
FspBI CTAG 1 cut(s) 593
GlaI GCGC 6 cut(s) 8, 367, 714, 1025, 1137, 1444
GluI GCNGC 5 cut(s) 303, 364, 774, 924, 995
GsaI CCCAGC 1 cut(s) 780
HaeII RGCGCY 1 cut(s) 1139
HaeIII GGCC 3 cut(s) 130, 381, 795
HgaI GACGC 6 cut(s) 236, 268, 530, 1070, 1126, 1154
HhaI GCGC 6 cut(s) 9, 368, 715, 1026, 1138, 1445
Hin1I GRCGYC 3 cut(s) 471, 522, 1062
Hin1II CATG 4 cut(s) 129, 451, 570, 710
Hin6I GCGC 6 cut(s) 7, 366, 713, 1024, 1136, 1443
HinP1I GCGC 6 cut(s) 7, 366, 713, 1024, 1136, 1443
HincII GTYRAC 4 cut(s) 97, 865, 903, 1312
HindII GTYRAC 4 cut(s) 97, 865, 903, 1312
HindIII AAGCTT 1 cut(s) 1055
HinfI GANTC 9 cut(s) 134, 140, 155, 167, 269, 599, 1005, 1043, 1091
HpaI GTTAAC 1 cut(s) 1312
HphI GGTGA 3 cut(s) 49, 661, 668
Hpy166II GTNNAC 6 cut(s) 97, 171, 445, 865, 903, 1312
Hpy188I TCNGA 9 cut(s) 139, 166, 226, 607, 933, 1042, 1245, 1265, 1302
Hpy188III TCNNGA 3 cut(s) 16, 746, 1221
Hpy8I GTNNAC 6 cut(s) 97, 171, 445, 865, 903, 1312
Hpy99I CGWCG 8 cut(s) 230, 473, 476, 524, 607, 624, 820, 1249
HpyAV CCTTC 7 cut(s) 40, 117, 229, 668, 749, 1231, 1313
HpyCH4III ACNGT 8 cut(s) 562, 656, 833, 857, 900, 1234, 1249, 1326
HpyCH4V TGCA 2 cut(s) 498, 994
HpyF10VI GCNNNNNNNGC 5 cut(s) 236, 495, 1032, 1054, 1133
HpyF3I CTNAG 1 cut(s) 1139
Hsp92I GRCGYC 3 cut(s) 471, 522, 1062
Hsp92II CATG 4 cut(s) 129, 451, 570, 710
HspAI GCGC 6 cut(s) 7, 366, 713, 1024, 1136, 1443
Ksp22I TGATCA 1 cut(s) 721
KspAI GTTAAC 1 cut(s) 1312
Kzo9I GATC 5 cut(s) 572, 662, 721, 1213, 1302
LmnI GCTCC 4 cut(s) 4, 486, 710, 1186
Lsp1109I GCAGC 1 cut(s) 1006
LweI GCATC 3 cut(s) 196, 239, 728
MaeI CTAG 1 cut(s) 593
MaeIII GTNAC 7 cut(s) 506, 613, 656, 743, 954, 1105, 1419
MalI GATC 5 cut(s) 574, 664, 723, 1215, 1304
MboI GATC 5 cut(s) 572, 662, 721, 1213, 1302
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 2 cut(s) 456, 1183
MluCI AATT 2 cut(s) 845, 1294
MlyI GAGTC 5 cut(s) 143, 176, 263, 593, 1052
MmeI TCCRAC 5 cut(s) 249, 286, 403, 585, 1268
MseI TTAA 2 cut(s) 146, 1311
MslI CAYNNNNRTG 2 cut(s) 124, 204
MspR9I CCNGG 3 cut(s) 1032, 1307, 1397
MvnI CGCG 6 cut(s) 279, 715, 1024, 1026, 1443, 1445
MwoI GCNNNNNNNGC 5 cut(s) 236, 495, 1032, 1054, 1133
NciI CCSGG 3 cut(s) 1032, 1307, 1397
NdeII GATC 5 cut(s) 572, 662, 721, 1213, 1302
NlaIII CATG 4 cut(s) 129, 451, 570, 710
NlaIV GGNNCC 2 cut(s) 482, 1242
NmeAIII GCCGAG 1 cut(s) 1090
NmuCI GTSAC 4 cut(s) 613, 656, 743, 1419
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 1226, 1286
PfeI GAWTC 4 cut(s) 140, 155, 1005, 1091
Pfl23II CGTACG 1 cut(s) 651
PflFI GACNNNGTC 1 cut(s) 1412
PkrI GCNGC 5 cut(s) 304, 365, 775, 925, 996
PleI GAGTC 5 cut(s) 142, 175, 263, 593, 1051
PmaCI CACGTG 3 cut(s) 202, 727, 1206
PmlI CACGTG 3 cut(s) 202, 727, 1206
PpsI GAGTC 5 cut(s) 142, 175, 263, 593, 1051
Ppu21I YACGTR 5 cut(s) 202, 344, 727, 1132, 1206
PsiI TTATAA 1 cut(s) 837
Psp1406I AACGTT 1 cut(s) 441
PspCI CACGTG 3 cut(s) 202, 727, 1206
PspFI CCCAGC 1 cut(s) 776
PspLI CGTACG 1 cut(s) 651
PspN4I GGNNCC 2 cut(s) 482, 1242
PspPI GGNCC 3 cut(s) 129, 241, 793
PsrI GAACNNNNNNTAC 4 cut(s) 328, 360, 1181, 1213
PsuI RGATCY 1 cut(s) 572
PsyI GACNNNGTC 1 cut(s) 1412
RsaI GTAC 4 cut(s) 346, 564, 653, 1099
RsaNI GTAC 4 cut(s) 345, 563, 652, 1098
RseI CAYNNNNRTG 2 cut(s) 124, 204
SaqAI TTAA 2 cut(s) 146, 1311
SatI GCNGC 5 cut(s) 303, 364, 774, 924, 995
Sau3AI GATC 5 cut(s) 572, 662, 721, 1213, 1302
Sau96I GGNCC 3 cut(s) 129, 241, 793
SchI GAGTC 5 cut(s) 143, 176, 263, 593, 1052
ScrFI CCNGG 3 cut(s) 1032, 1307, 1397
SduI GDGCHC 2 cut(s) 456, 1183
SfaNI GCATC 3 cut(s) 196, 239, 728
SgrAI CRCCGGYG 1 cut(s) 350
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 2 cut(s) 124, 204
SnaBI TACGTA 1 cut(s) 1132
Sse9I AATT 2 cut(s) 845, 1294
SspMI CTAG 1 cut(s) 593
StyD4I CCNGG 3 cut(s) 1030, 1305, 1395
TaaI ACNGT 8 cut(s) 562, 656, 833, 857, 900, 1234, 1249, 1326
TaqI TCGA 4 cut(s) 456, 622, 975, 1200
TaqII GACCGA 1 cut(s) 533
TasI AATT 2 cut(s) 845, 1294
TauI GCSGC 4 cut(s) 305, 366, 776, 926
TfiI GAWTC 4 cut(s) 140, 155, 1005, 1091
Tru1I TTAA 2 cut(s) 146, 1311
Tru9I TTAA 2 cut(s) 146, 1311
TscAI CASTG 1 cut(s) 1321
TseFI GTSAC 4 cut(s) 613, 656, 743, 1419
TseI GCWGC 1 cut(s) 994
Tsp45I GTSAC 4 cut(s) 613, 656, 743, 1419
TspDTI ATGAA 3 cut(s) 168, 695, 1247
TspGWI ACGGA 4 cut(s) 25, 245, 675, 855
TspRI CASTG 1 cut(s) 1321
Tth111I GACNNNGTC 1 cut(s) 1412
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 845
XspI CTAG 1 cut(s) 593
ZraI GACGTC 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.