Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0015794

Physical Location & Seq

Genomic Coordinates Reverse (-)

51574471 .. 51577677

Gene Structure 3207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG286900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAAAATCAAAACCTCGAGACGCCGGCATCTGGACGAGGATGAAAATCAAACCTCGAGACGTACGGCTCCTGTATCGAGTCATCTCTCTCTTCGGAATCGGAACCGGAAACCTCCGCTCGACACCCCCGGCTGCAACTCCAAGAAGACCTGCCTCTACCAAGTCTCCTACGGCGACGGCTCCTTCACCGTCGGCGAGTTCTCCACCGAAACCCTAACCTTCCGCCGCACCAAAGTCCCGCGCGTCGCCGTCGGCTGCGGCCACGACAACGAAGGCCTCTTCGTCGGCGCCGCCGGCCTGTTGGGTCTCGGCCGCGGGAAGCTATCGTTCCCCTCCCAGACCGGTCCCCGGTTCAAGTCCAAATTCTCCTACTGCCTCGTAGACCGGGCCGCCTCCTCCAAACCCTCCTCCGTCGTTTTCGGCGACTCGGCCGTTTCCCGAACCGCCCGGTTCACTCCTCTCCTCTCCAACCCCAAGCTCGACACGTTCTACTACGTCGAACTCATCGGTATCAGCGTCGGCGGGACACGTGTCCCGGGAATCACGGCCTCGTTGTTCAAACTCGACCCGGCTGGAAACGGCGGGGTCATAATCGACTCGGGCACGTCCGTGACCCGGTTGACCCGATCCGCTTACAACTCCCTAAGGAATGCTTTCCGGGCCGGAACCACGACCCTGAAGCGGGCGCCCGAGTTTTCTCTCTTCGATACTTGCTTTGATCTCTCCGGGAAGACGGAGGTGAAGGTTCCGACGGTGGTGCTGCATTTCCGGGGCGCCGACGTGTCGTTGCCGGCGACGAACTACTTGATTCCGGTGGATAGTAGCGGCACCTTCTGCTTTGCTTTTGCGGGTACGATGGGCGGGTTGTCCATAATTGGGAATATCCAGCAGCAAGGGTTTCGGGTGGTTTATGACTTGGCGGGTTCGCGGGTCGGGTTTGCTCCACGTGGGTGCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009505 GO:0009628 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044238 GO:0044464 GO:0050896 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

319

Amino Acids

34.28

Weight (kDa)

9.93

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	9 - 142	5.5e-31	Xylanase inhibitor N-terminal
Asp	PF00026	53 - 315	3.7e-15	Eukaryotic aspartyl protease
TAXi_C	PF14541	164 - 314	7.8e-36	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015794)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01300 AT3G61820
fragaria_vesca	FvH4_7g16670
malus_domestica	MD01G1082200.v1.1 MD07G1150600.v1.1
prunus_persica	Prupe.2G189400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359821
rosa_laevigata	RLG00000027851
rosa_roxburghii	Rroxscaffold_4G00296790
rosa_rugosa	Rorug01G0272900
rosa_samantha	Rh1AG286900 Rh1BG252700 Rh1CG269900 Rh1DG281700
rosa_wichuraiana	Rw1G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccB1I	GGYRCC	4 cut(s)	287, 685, 773, 827
AccBSI	CCGCTC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	4 cut(s)	241, 243, 315, 928
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	3 cut(s)	259, 310, 429
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	698
AcvI	CACGTG	2 cut(s)	530, 947
AcyI	GRCGYC	4 cut(s)	22, 288, 686, 774
AfaI	GTAC	2 cut(s)	64, 853
AfiI	CCNNNNNNNGG	6 cut(s)	31, 348, 615, 681, 682, 876
AflIII	ACRYGT	4 cut(s)	483, 527, 529, 780
AgeI	ACCGGT	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	355, 559
AjiI	CACGTC	2 cut(s)	606, 781
AleI	CACNNNNGTG	2 cut(s)	608, 949
AluBI	AGCT	2 cut(s)	322, 478
AluI	AGCT	2 cut(s)	322, 478
Alw26I	GTCTC	4 cut(s)	13, 52, 169, 311
AlwI	GGATC	1 cut(s)	621
Ama87I	CYCGRG	5 cut(s)	16, 55, 535, 598, 689
AoxI	GGCC	8 cut(s)	259, 274, 295, 310, 387, 429, 546, 660
ApeKI	GCWGC	4 cut(s)	132, 255, 760, 889
ApoI	RAATTY	1 cut(s)	362
AsiGI	ACCGGT	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	653
AspLEI	GCGC	5 cut(s)	243, 290, 688, 776, 956
AspS9I	GGNCC	3 cut(s)	344, 387, 660
AsuHPI	GGTGA	2 cut(s)	178, 751
AvaI	CYCGRG	5 cut(s)	16, 55, 535, 598, 689
AvaII	GGWCC	1 cut(s)	344
AxyI	CCTNAGG	1 cut(s)	644
BaeGI	GKGCMC	1 cut(s)	605
BanI	GGYRCC	4 cut(s)	287, 685, 773, 827
BbrPI	CACGTG	2 cut(s)	530, 947
BbsI	GAAGAC	2 cut(s)	152, 737
BbvI	GCAGC	4 cut(s)	119, 242, 747, 901
BccI	CCATC	1 cut(s)	850
BceAI	ACGGC	7 cut(s)	81, 187, 193, 233, 416, 561, 595
BcgI	CGANNNNNNTGC	4 cut(s)	739, 773, 881, 915
BcoDI	GTCTC	4 cut(s)	13, 52, 169, 311
BfoI	RGCGCY	3 cut(s)	291, 689, 777
BfuAI	ACCTGC	1 cut(s)	158
Bme18I	GGWCC	1 cut(s)	344
BmeT110I	CYCGRG	5 cut(s)	16, 55, 535, 598, 689
BmgBI	CACGTC	2 cut(s)	606, 781
BmgT120I	GGNCC	3 cut(s)	344, 387, 660
BmsI	GCATC	1 cut(s)	37
BoxI	GACNNNNGTC	1 cut(s)	530
BpiI	GAAGAC	2 cut(s)	152, 737
BsaAI	YACGTR	2 cut(s)	530, 947
BsaBI	GATNNNNATC	1 cut(s)	45
BsaHI	GRCGYC	4 cut(s)	22, 288, 686, 774
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	5 cut(s)	127, 313, 347, 535, 769
BsaWI	WCCGGW	3 cut(s)	105, 341, 811
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 348, 615, 681, 682, 876
Bse118I	RCCGGY	4 cut(s)	24, 293, 341, 790
Bse21I	CCTNAGG	1 cut(s)	644
Bse8I	GATNNNNATC	1 cut(s)	45
BseDI	CCNNGG	5 cut(s)	127, 313, 347, 535, 769
BseGI	GGATG	1 cut(s)	46
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	6 cut(s)	31, 348, 615, 681, 682, 876
BseRI	GAGGAG	4 cut(s)	385, 397, 447, 452
BseSI	GKGCMC	1 cut(s)	605
BseX3I	CGGCCG	2 cut(s)	310, 429
BseXI	GCAGC	4 cut(s)	119, 242, 747, 901
Bsh1236I	CGCG	4 cut(s)	241, 243, 315, 928
Bsh1285I	CGRYCG	2 cut(s)	313, 432
BshFI	GGCC	8 cut(s)	261, 276, 297, 312, 389, 431, 548, 662
BshNI	GGYRCC	4 cut(s)	287, 685, 773, 827
BshTI	ACCGGT	1 cut(s)	341
BsiEI	CGRYCG	2 cut(s)	313, 432
BsiHKCI	CYCGRG	5 cut(s)	16, 55, 535, 598, 689
BsiWI	CGTACG	1 cut(s)	62
BslFI	GGGAC	4 cut(s)	221, 330, 518, 538
BslI	CCNNNNNNNGG	6 cut(s)	31, 348, 615, 681, 682, 876
BsmAI	GTCTC	4 cut(s)	13, 52, 169, 311
BsmBI	CGTCTC	2 cut(s)	13, 52
BsmFI	GGGAC	4 cut(s)	221, 330, 518, 538
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	8 cut(s)	261, 276, 297, 312, 389, 431, 548, 662
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	5 cut(s)	16, 55, 535, 598, 689
Bsp1286I	GDGCHC	1 cut(s)	605
Bsp143I	GATC	2 cut(s)	626, 718
BspANI	GGCC	8 cut(s)	261, 276, 297, 312, 389, 431, 548, 662
BspFNI	CGCG	4 cut(s)	241, 243, 315, 928
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	621
BspT107I	GGYRCC	4 cut(s)	287, 685, 773, 827
BspTNI	GGTCTC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	118
BsrFI	RCCGGY	4 cut(s)	24, 293, 341, 790
BssAI	RCCGGY	4 cut(s)	24, 293, 341, 790
BssECI	CCNNGG	5 cut(s)	127, 313, 347, 535, 769
BssMI	GATC	2 cut(s)	626, 718
BssNI	GRCGYC	4 cut(s)	22, 288, 686, 774
Bst4CI	ACNGT	2 cut(s)	190, 754
Bst6I	CTCTTC	3 cut(s)	96, 284, 707
BstACI	GRCGYC	4 cut(s)	22, 288, 686, 774
BstAPI	GCANNNNNTGC	1 cut(s)	834
BstBAI	YACGTR	2 cut(s)	530, 947
BstC8I	GCNNGC	4 cut(s)	26, 295, 684, 792
BstDEI	CTNAG	1 cut(s)	644
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	4 cut(s)	241, 243, 315, 928
BstH2I	RGCGCY	3 cut(s)	291, 689, 777
BstHHI	GCGC	5 cut(s)	243, 290, 688, 776, 956
BstKTI	GATC	2 cut(s)	629, 721
BstMAI	GTCTC	4 cut(s)	13, 52, 169, 311
BstMBI	GATC	2 cut(s)	626, 718
BstMCI	CGRYCG	2 cut(s)	313, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	294, 659, 834
BstPAI	GACNNNNGTC	1 cut(s)	530
BstSLI	GKGCMC	1 cut(s)	605
BstUI	CGCG	4 cut(s)	241, 243, 315, 928
BstV1I	GCAGC	4 cut(s)	119, 242, 747, 901
BstV2I	GAAGAC	2 cut(s)	152, 737
BstZI	CGGCCG	2 cut(s)	310, 429
Bsu36I	CCTNAGG	1 cut(s)	644
BsuRI	GGCC	8 cut(s)	261, 276, 297, 312, 389, 431, 548, 662
BtgI	CCRYGG	1 cut(s)	313
BtrI	CACGTC	2 cut(s)	606, 781
BtsCI	GGATG	1 cut(s)	46
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	4 cut(s)	26, 295, 684, 792
CfoI	GCGC	5 cut(s)	243, 290, 688, 776, 956
Cfr10I	RCCGGY	4 cut(s)	24, 293, 341, 790
Cfr13I	GGNCC	3 cut(s)	344, 387, 660
Cfr42I	CCGCGG	1 cut(s)	316
Cfr9I	CCCGGG	1 cut(s)	535
CseI	GACGC	3 cut(s)	30, 232, 505
Csp6I	GTAC	2 cut(s)	63, 852
CspAI	ACCGGT	1 cut(s)	341
CviQI	GTAC	2 cut(s)	63, 852
DdeI	CTNAG	1 cut(s)	644
DinI	GGCGCC	3 cut(s)	289, 687, 775
DpnI	GATC	2 cut(s)	628, 720
DpnII	GATC	2 cut(s)	626, 718
EaeI	YGGCCR	3 cut(s)	259, 310, 429
EagI	CGGCCG	2 cut(s)	310, 429
Eam1104I	CTCTTC	3 cut(s)	96, 284, 707
EarI	CTCTTC	3 cut(s)	96, 284, 707
EciI	GGCGGA	1 cut(s)	212
EclXI	CGGCCG	2 cut(s)	310, 429
Eco147I	AGGCCT	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	344
Eco52I	CGGCCG	2 cut(s)	310, 429
Eco57I	CTGAAG	1 cut(s)	698
Eco72I	CACGTG	2 cut(s)	530, 947
Eco81I	CCTNAGG	1 cut(s)	644
Eco88I	CYCGRG	5 cut(s)	16, 55, 535, 598, 689
EgeI	GGCGCC	3 cut(s)	289, 687, 775
EheI	GGCGCC	3 cut(s)	289, 687, 775
Esp3I	CGTCTC	2 cut(s)	13, 52
FaiI	YATR	3 cut(s)	590, 872, 912
FalI	AAGNNNNNCTT	2 cut(s)	637, 669
FaqI	GGGAC	4 cut(s)	221, 330, 518, 538
FauI	CCCGC	9 cut(s)	246, 308, 515, 575, 675, 841, 854, 913, 921
FblI	GTMKAC	1 cut(s)	381
FokI	GGATG	1 cut(s)	53
GlaI	GCGC	5 cut(s)	242, 289, 687, 775, 955
HaeII	RGCGCY	3 cut(s)	291, 689, 777
HaeIII	GGCC	8 cut(s)	261, 276, 297, 312, 389, 431, 548, 662
HgaI	GACGC	3 cut(s)	30, 232, 505
HhaI	GCGC	5 cut(s)	243, 290, 688, 776, 956
Hin1I	GRCGYC	4 cut(s)	22, 288, 686, 774
Hin6I	GCGC	5 cut(s)	241, 288, 686, 774, 954
HinP1I	GCGC	5 cut(s)	241, 288, 686, 774, 954
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HinfI	GANTC	6 cut(s)	79, 97, 425, 540, 596, 808
HphI	GGTGA	2 cut(s)	178, 751
Hpy166II	GTNNAC	3 cut(s)	382, 453, 621
Hpy188I	TCNGA	3 cut(s)	96, 102, 750
Hpy188III	TCNNGA	4 cut(s)	18, 32, 57, 438
Hpy8I	GTNNAC	3 cut(s)	382, 453, 621
HpyAV	CCTTC	5 cut(s)	193, 229, 266, 736, 841
HpyCH4III	ACNGT	2 cut(s)	190, 754
HpyCH4IV	ACGT	7 cut(s)	61, 485, 495, 529, 605, 780, 946
HpyCH4V	TGCA	2 cut(s)	135, 763
HpyF10VI	GCNNNNNNNGC	3 cut(s)	294, 659, 834
HpyF3I	CTNAG	1 cut(s)	644
HpySE526I	ACGT	7 cut(s)	61, 485, 495, 529, 605, 780, 946
Hsp92I	GRCGYC	4 cut(s)	22, 288, 686, 774
HspAI	GCGC	5 cut(s)	241, 288, 686, 774, 954
KasI	GGCGCC	3 cut(s)	287, 685, 773
KroI	GCCGGC	3 cut(s)	24, 293, 790
KroNI	GCCGGC	3 cut(s)	26, 295, 792
KspI	CCGCGG	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	626, 718
LmnI	GCTCC	3 cut(s)	73, 185, 946
Lsp1109I	GCAGC	4 cut(s)	119, 242, 747, 901
LweI	GCATC	1 cut(s)	37
MaeII	ACGT	7 cut(s)	61, 485, 495, 529, 605, 780, 946
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	2 cut(s)	628, 720
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	2 cut(s)	626, 718
MboII	GAAGA	5 cut(s)	83, 157, 271, 694, 742
MhlI	GDGCHC	1 cut(s)	605
MluCI	AATT	2 cut(s)	362, 873
Mly113I	GGCGCC	3 cut(s)	288, 686, 774
MlyI	GAGTC	3 cut(s)	88, 419, 590
MmeI	TCCRAC	2 cut(s)	492, 773
MroNI	GCCGGC	3 cut(s)	24, 293, 790
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	1 cut(s)	958
MslI	CAYNNNNRTG	2 cut(s)	608, 949
MspA1I	CMGCKG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	655
MvnI	CGCG	4 cut(s)	241, 243, 315, 928
MwoI	GCNNNNNNNGC	3 cut(s)	294, 659, 834
NaeI	GCCGGC	3 cut(s)	26, 295, 792
NarI	GGCGCC	3 cut(s)	288, 686, 774
NdeII	GATC	2 cut(s)	626, 718
NgoMIV	GCCGGC	3 cut(s)	24, 293, 790
NmeAIII	GCCGAG	2 cut(s)	288, 407
NmuCI	GTSAC	1 cut(s)	610
OliI	CACNNNNGTG	2 cut(s)	608, 949
PaeR7I	CTCGAG	2 cut(s)	16, 55
PceI	AGGCCT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	3 cut(s)	420, 513, 791
PctI	GAATGC	1 cut(s)	655
PdiI	GCCGGC	3 cut(s)	26, 295, 792
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	97, 540, 808
Pfl23II	CGTACG	1 cut(s)	62
PfoI	TCCNGGA	1 cut(s)	725
PinAI	ACCGGT	1 cut(s)	341
PleI	GAGTC	3 cut(s)	87, 419, 590
PluTI	GGCGCC	3 cut(s)	291, 689, 777
PmaCI	CACGTG	2 cut(s)	530, 947
PmlI	CACGTG	2 cut(s)	530, 947
PpsI	GAGTC	3 cut(s)	87, 419, 590
Ppu21I	YACGTR	2 cut(s)	530, 947
PshAI	GACNNNNGTC	1 cut(s)	530
PspCI	CACGTG	2 cut(s)	530, 947
PspLI	CGTACG	1 cut(s)	62
PspPI	GGNCC	3 cut(s)	344, 387, 660
RsaI	GTAC	2 cut(s)	64, 853
RsaNI	GTAC	2 cut(s)	63, 852
RseI	CAYNNNNRTG	2 cut(s)	608, 949
SacII	CCGCGG	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	958
Sau3AI	GATC	2 cut(s)	626, 718
Sau96I	GGNCC	3 cut(s)	344, 387, 660
SchI	GAGTC	3 cut(s)	88, 419, 590
SduI	GDGCHC	1 cut(s)	605
SfaNI	GCATC	1 cut(s)	37
SfoI	GGCGCC	3 cut(s)	289, 687, 775
Sfr274I	CTCGAG	2 cut(s)	16, 55
Sfr303I	CCGCGG	1 cut(s)	316
SgrBI	CCGCGG	1 cut(s)	316
SinI	GGWCC	1 cut(s)	344
SlaI	CTCGAG	2 cut(s)	16, 55
SmaI	CCCGGG	1 cut(s)	537
SmiMI	CAYNNNNRTG	2 cut(s)	608, 949
SmlI	CTYRAG	2 cut(s)	16, 55
SmoI	CTYRAG	2 cut(s)	16, 55
Sse9I	AATT	2 cut(s)	362, 873
SseBI	AGGCCT	1 cut(s)	276
SspDI	GGCGCC	3 cut(s)	287, 685, 773
StuI	AGGCCT	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	190, 754
TaiI	ACGT	7 cut(s)	64, 488, 498, 532, 608, 783, 949
TaqI	TCGA	9 cut(s)	17, 56, 77, 120, 480, 498, 564, 594, 705
TasI	AATT	2 cut(s)	362, 873
TauI	GCSGC	6 cut(s)	228, 261, 293, 315, 392, 828
TfiI	GAWTC	3 cut(s)	97, 540, 808
Tru1I	TTAA	1 cut(s)	958
Tru9I	TTAA	1 cut(s)	958
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	4 cut(s)	132, 255, 760, 889
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	2 cut(s)	17, 57
TspGWI	ACGGA	3 cut(s)	400, 598, 749
TspMI	CCCGGG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	362
XhoI	CTCGAG	2 cut(s)	16, 55
XmaI	CCCGGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	381
XmnI	GAANNNNTTC	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.