Rroxscaffold_4G00296790

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
16826745 .. 16830518
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296790.1

Sequence Viewer

Length: 900 bp
ATGACTACATGGGAATTTCATGCTTTGCTTAAAGTCAAAAACCAAGGTATACAGAATCTCGACACCCCCGGCTGCAACTCCAAGAAGACCTGCCTCTACCAAGTCTCCTACGGCGACGGCTCCTTCACCGTCGGCGAGTTCTCCACCGAAACCCTAACCTTCCGCCGCACCAAAGTCCCGCGCGTCGCCGTCGGCTGCGGCCACGACAACGAAGGCCTCTTCGTCGGCGCCGCCGGTCTGCTGGGTCTCGGCCGCGGGAAGCTGTCGTTCCCCTCCCAGACCGGTCCCCGGTTCAAGTCCAAATTCTCCTACTGCCTCGTGGACCGGGCCGCCTCCTCCAAACCCTCCTCCGTCGTTTTCGGCGACTCGGCCGTTTCCCGAACCGCCCGCTTCACTCCTCTCGTCTCCAACCCGAAGCTCGACACGTTCTACTACGTCGAACTCATCGGTATCAGCGTCGGCGGGACACGTGTCCCGGGAATCACGGCCTCGTTGTTCAAACTCGACCCGGCTGGAAACGGCGGGGTCATAATCGACTCGGGCACGTCCGTGACCCGGTTGACCCGATCCGCTTACAACTCCCTAAGGAATGCTTTCCGGGCCGGAACCCCGACCCTGAAGCGGGCGCCCGAGTTTTCTCTCTTCGATACCTGCTTTGATCTCTCCGGTAAGACGGAGGTGAAGGTGCCGACGGTGGTGCTGCATTTCCGAGGCGCCGACGTGTCGTTGCCGGCGACGAACTACTTGATTCCGGTGGATAGTAGCGGCACCTTCTGCTTTGCTTTTGCGGGTACGATGGGCGGGTTGTCCATAATTGGGAATATCCAGCAGCAAGGGTTTCGGGTGGTTTATGACTTGGCGGGTTCACGGGTCGGGTTTGCTCCACGTGGGTGCGCTTAA

Protein Analysis

299

Amino Acids

31.85

Weight (kDa)

9.53

Isoelectric Point (pI)

22.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 22 - 122 1.3e-29 Xylanase inhibitor N-terminal
Asp PF00026 33 - 295 3.6e-15 Eukaryotic aspartyl protease
TAXi_C PF14541 144 - 294 1.5e-35 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015794)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01300 AT3G61820
fragaria_vesca FvH4_7g16670
malus_domestica MD01G1082200.v1.1 MD07G1150600.v1.1
prunus_persica Prupe.2G189400_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359821
rosa_laevigata RLG00000027851
rosa_roxburghii Rroxscaffold_4G00296790
rosa_rugosa Rorug01G0272900
rosa_samantha Rh1AG286900 Rh1BG252700 Rh1CG269900 Rh1DG281700
rosa_wichuraiana Rw1G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 98, 659
AccB1I GGYRCC 5 cut(s) 227, 625, 685, 713, 767
AccI GTMKAC 1 cut(s) 49
AccII CGCG 3 cut(s) 181, 183, 255
AclWI GGATC 1 cut(s) 561
AcoI YGGCCR 3 cut(s) 199, 250, 369
AcsI RAATTY 2 cut(s) 14, 302
AcuI CTGAAG 1 cut(s) 638
AcvI CACGTG 2 cut(s) 470, 887
AcyI GRCGYC 3 cut(s) 228, 626, 714
AfaI GTAC 1 cut(s) 793
AfiI CCNNNNNNNGG 5 cut(s) 288, 555, 621, 622, 816
AflIII ACRYGT 4 cut(s) 423, 467, 469, 720
AgeI ACCGGT 1 cut(s) 281
AgsI TTSAA 2 cut(s) 295, 499
AjiI CACGTC 2 cut(s) 546, 721
AleI CACNNNNGTG 2 cut(s) 548, 889
AluBI AGCT 2 cut(s) 262, 418
AluI AGCT 2 cut(s) 262, 418
Alw26I GTCTC 3 cut(s) 109, 251, 409
AlwI GGATC 1 cut(s) 561
Ama87I CYCGRG 3 cut(s) 475, 538, 629
AoxI GGCC 7 cut(s) 199, 214, 250, 327, 369, 486, 600
ApeKI GCWGC 4 cut(s) 72, 195, 700, 829
ApoI RAATTY 2 cut(s) 14, 302
AsiGI ACCGGT 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 593
AspLEI GCGC 5 cut(s) 183, 230, 628, 716, 896
AspS9I GGNCC 4 cut(s) 284, 322, 327, 600
AsuC2I CCSGG 8 cut(s) 69, 289, 326, 476, 477, 509, 556, 599
AsuHPI GGTGA 2 cut(s) 118, 691
AvaI CYCGRG 3 cut(s) 475, 538, 629
AvaII GGWCC 2 cut(s) 284, 322
AxyI CCTNAGG 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 545
BanI GGYRCC 5 cut(s) 227, 625, 685, 713, 767
BauI CACGAG 1 cut(s) 317
BbrPI CACGTG 2 cut(s) 470, 887
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 4 cut(s) 59, 182, 687, 841
BccI CCATC 1 cut(s) 790
BceAI ACGGC 6 cut(s) 127, 133, 173, 356, 501, 535
BcgI CGANNNNNNTGC 4 cut(s) 679, 713, 821, 855
BcnI CCSGG 8 cut(s) 69, 289, 326, 476, 477, 509, 556, 599
BcoDI GTCTC 3 cut(s) 109, 251, 409
BfoI RGCGCY 3 cut(s) 231, 629, 717
BfuAI ACCTGC 2 cut(s) 98, 659
Bme1390I CCNGG 8 cut(s) 69, 289, 326, 476, 477, 509, 556, 599
Bme18I GGWCC 2 cut(s) 284, 322
BmeT110I CYCGRG 3 cut(s) 475, 538, 629
BmgBI CACGTC 2 cut(s) 546, 721
BmgT120I GGNCC 4 cut(s) 284, 322, 327, 600
BmiI GGNNCC 8 cut(s) 121, 229, 286, 607, 627, 687, 715, 769
BmrFI CCNGG 8 cut(s) 69, 289, 326, 476, 477, 509, 556, 599
BoxI GACNNNNGTC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 92
BpuMI CCSGG 8 cut(s) 69, 289, 326, 476, 477, 509, 556, 599
BsaAI YACGTR 2 cut(s) 470, 887
BsaHI GRCGYC 3 cut(s) 228, 626, 714
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 6 cut(s) 43, 67, 253, 287, 475, 709
BsaWI WCCGGW 3 cut(s) 281, 665, 751
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 5 cut(s) 288, 555, 621, 622, 816
Bse118I RCCGGY 3 cut(s) 233, 281, 730
Bse21I CCTNAGG 1 cut(s) 584
BseDI CCNNGG 6 cut(s) 43, 67, 253, 287, 475, 709
BseLI CCNNNNNNNGG 5 cut(s) 288, 555, 621, 622, 816
BseRI GAGGAG 3 cut(s) 325, 337, 387
BseSI GKGCMC 1 cut(s) 545
BseX3I CGGCCG 2 cut(s) 250, 369
BseXI GCAGC 4 cut(s) 59, 182, 687, 841
BseYI CCCAGC 1 cut(s) 241
Bsh1236I CGCG 3 cut(s) 181, 183, 255
Bsh1285I CGRYCG 2 cut(s) 253, 372
BshFI GGCC 7 cut(s) 201, 216, 252, 329, 371, 488, 602
BshNI GGYRCC 5 cut(s) 227, 625, 685, 713, 767
BshTI ACCGGT 1 cut(s) 281
BsiEI CGRYCG 2 cut(s) 253, 372
BsiHKCI CYCGRG 3 cut(s) 475, 538, 629
BslFI GGGAC 4 cut(s) 161, 270, 458, 478
BslI CCNNNNNNNGG 5 cut(s) 288, 555, 621, 622, 816
BsmAI GTCTC 3 cut(s) 109, 251, 409
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 4 cut(s) 161, 270, 458, 478
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 7 cut(s) 201, 216, 252, 329, 371, 488, 602
Bso31I GGTCTC 1 cut(s) 251
BsoBI CYCGRG 3 cut(s) 475, 538, 629
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 2 cut(s) 566, 658
BspANI GGCC 7 cut(s) 201, 216, 252, 329, 371, 488, 602
BspFNI CGCG 3 cut(s) 181, 183, 255
BspLI GGNNCC 8 cut(s) 121, 229, 286, 607, 627, 687, 715, 769
BspMI ACCTGC 2 cut(s) 98, 659
BspPI GGATC 1 cut(s) 561
BspT107I GGYRCC 5 cut(s) 227, 625, 685, 713, 767
BspTNI GGTCTC 1 cut(s) 251
BsrFI RCCGGY 3 cut(s) 233, 281, 730
BssAI RCCGGY 3 cut(s) 233, 281, 730
BssECI CCNNGG 6 cut(s) 43, 67, 253, 287, 475, 709
BssMI GATC 2 cut(s) 566, 658
BssNAI GTATAC 1 cut(s) 50
BssNI GRCGYC 3 cut(s) 228, 626, 714
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 43
Bst1107I GTATAC 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 317
Bst4CI ACNGT 2 cut(s) 130, 694
Bst6I CTCTTC 2 cut(s) 224, 647
BstACI GRCGYC 3 cut(s) 228, 626, 714
BstAPI GCANNNNNTGC 1 cut(s) 774
BstBAI YACGTR 2 cut(s) 470, 887
BstC8I GCNNGC 3 cut(s) 388, 624, 732
BstDEI CTNAG 1 cut(s) 584
BstDSI CCRYGG 1 cut(s) 253
BstFNI CGCG 3 cut(s) 181, 183, 255
BstH2I RGCGCY 3 cut(s) 231, 629, 717
BstHHI GCGC 5 cut(s) 183, 230, 628, 716, 896
BstKTI GATC 2 cut(s) 569, 661
BstMAI GTCTC 3 cut(s) 109, 251, 409
BstMBI GATC 2 cut(s) 566, 658
BstMCI CGRYCG 2 cut(s) 253, 372
BstMWI GCNNNNNNNGC 2 cut(s) 599, 774
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 8 cut(s) 67, 287, 324, 474, 475, 507, 554, 597
BstSLI GKGCMC 1 cut(s) 545
BstUI CGCG 3 cut(s) 181, 183, 255
BstV1I GCAGC 4 cut(s) 59, 182, 687, 841
BstV2I GAAGAC 1 cut(s) 92
BstZ17I GTATAC 1 cut(s) 50
BstZI CGGCCG 2 cut(s) 250, 369
Bsu36I CCTNAGG 1 cut(s) 584
BsuRI GGCC 7 cut(s) 201, 216, 252, 329, 371, 488, 602
BtgI CCRYGG 1 cut(s) 253
BtrI CACGTC 2 cut(s) 546, 721
BveI ACCTGC 2 cut(s) 98, 659
Cac8I GCNNGC 3 cut(s) 388, 624, 732
CfoI GCGC 5 cut(s) 183, 230, 628, 716, 896
Cfr10I RCCGGY 3 cut(s) 233, 281, 730
Cfr13I GGNCC 4 cut(s) 284, 322, 327, 600
Cfr42I CCGCGG 1 cut(s) 256
Cfr9I CCCGGG 1 cut(s) 475
CseI GACGC 2 cut(s) 172, 445
Csp6I GTAC 1 cut(s) 792
CspAI ACCGGT 1 cut(s) 281
CviAII CATG 2 cut(s) 9, 20
CviQI GTAC 1 cut(s) 792
DdeI CTNAG 1 cut(s) 584
DinI GGCGCC 3 cut(s) 229, 627, 715
DpnI GATC 2 cut(s) 568, 660
DpnII GATC 2 cut(s) 566, 658
EaeI YGGCCR 3 cut(s) 199, 250, 369
EagI CGGCCG 2 cut(s) 250, 369
Eam1104I CTCTTC 2 cut(s) 224, 647
EarI CTCTTC 2 cut(s) 224, 647
EciI GGCGGA 1 cut(s) 152
EclXI CGGCCG 2 cut(s) 250, 369
Eco130I CCWWGG 1 cut(s) 43
Eco147I AGGCCT 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 284, 322
Eco52I CGGCCG 2 cut(s) 250, 369
Eco57I CTGAAG 1 cut(s) 638
Eco72I CACGTG 2 cut(s) 470, 887
Eco81I CCTNAGG 1 cut(s) 584
Eco88I CYCGRG 3 cut(s) 475, 538, 629
EcoT14I CCWWGG 1 cut(s) 43
EgeI GGCGCC 3 cut(s) 229, 627, 715
EheI GGCGCC 3 cut(s) 229, 627, 715
ErhI CCWWGG 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 2 cut(s) 12, 23
FaiI YATR 6 cut(s) 10, 21, 50, 530, 812, 852
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FaqI GGGAC 4 cut(s) 161, 270, 458, 478
FatI CATG 2 cut(s) 8, 19
FauI CCCGC 9 cut(s) 186, 248, 395, 455, 515, 615, 781, 794, 853
FblI GTMKAC 1 cut(s) 49
GlaI GCGC 5 cut(s) 182, 229, 627, 715, 895
GsaI CCCAGC 1 cut(s) 245
HaeII RGCGCY 3 cut(s) 231, 629, 717
HaeIII GGCC 7 cut(s) 201, 216, 252, 329, 371, 488, 602
HgaI GACGC 2 cut(s) 172, 445
HhaI GCGC 5 cut(s) 183, 230, 628, 716, 896
Hin1I GRCGYC 3 cut(s) 228, 626, 714
Hin1II CATG 2 cut(s) 12, 23
Hin6I GCGC 5 cut(s) 181, 228, 626, 714, 894
HinP1I GCGC 5 cut(s) 181, 228, 626, 714, 894
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 5 cut(s) 55, 365, 480, 536, 748
HphI GGTGA 2 cut(s) 118, 691
Hpy166II GTNNAC 4 cut(s) 50, 322, 561, 866
Hpy188I TCNGA 1 cut(s) 710
Hpy188III TCNNGA 2 cut(s) 59, 378
Hpy8I GTNNAC 4 cut(s) 50, 322, 561, 866
HpyAV CCTTC 5 cut(s) 133, 169, 206, 676, 781
HpyCH4III ACNGT 2 cut(s) 130, 694
HpyCH4IV ACGT 6 cut(s) 425, 435, 469, 545, 720, 886
HpyCH4V TGCA 2 cut(s) 75, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 599, 774
HpyF3I CTNAG 1 cut(s) 584
HpySE526I ACGT 6 cut(s) 425, 435, 469, 545, 720, 886
Hsp92I GRCGYC 3 cut(s) 228, 626, 714
Hsp92II CATG 2 cut(s) 12, 23
HspAI GCGC 5 cut(s) 181, 228, 626, 714, 894
KasI GGCGCC 3 cut(s) 227, 625, 713
KroI GCCGGC 1 cut(s) 730
KroNI GCCGGC 1 cut(s) 732
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 2 cut(s) 566, 658
LmnI GCTCC 2 cut(s) 125, 886
Lsp1109I GCAGC 4 cut(s) 59, 182, 687, 841
MaeII ACGT 6 cut(s) 425, 435, 469, 545, 720, 886
MaeIII GTNAC 1 cut(s) 550
MalI GATC 2 cut(s) 568, 660
MboI GATC 2 cut(s) 566, 658
MboII GAAGA 3 cut(s) 97, 211, 634
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 3 cut(s) 14, 302, 813
Mly113I GGCGCC 3 cut(s) 228, 626, 714
MlyI GAGTC 2 cut(s) 359, 530
MmeI TCCRAC 1 cut(s) 432
MroNI GCCGGC 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 593
MseI TTAA 2 cut(s) 30, 898
MslI CAYNNNNRTG 2 cut(s) 548, 889
MspA1I CMGCKG 1 cut(s) 255
MspR9I CCNGG 8 cut(s) 69, 289, 326, 476, 477, 509, 556, 599
Mva1269I GAATGC 1 cut(s) 595
MvnI CGCG 3 cut(s) 181, 183, 255
MwoI GCNNNNNNNGC 2 cut(s) 599, 774
NaeI GCCGGC 1 cut(s) 732
NarI GGCGCC 3 cut(s) 228, 626, 714
NciI CCSGG 8 cut(s) 69, 289, 326, 476, 477, 509, 556, 599
NdeII GATC 2 cut(s) 566, 658
NgoMIV GCCGGC 1 cut(s) 730
NlaIII CATG 2 cut(s) 12, 23
NlaIV GGNNCC 8 cut(s) 121, 229, 286, 607, 627, 687, 715, 769
NmeAIII GCCGAG 2 cut(s) 228, 347
NmuCI GTSAC 1 cut(s) 550
OliI CACNNNNGTG 2 cut(s) 548, 889
PceI AGGCCT 1 cut(s) 216
PcsI WCGNNNNNNNCGW 3 cut(s) 360, 453, 731
PctI GAATGC 1 cut(s) 595
PdiI GCCGGC 1 cut(s) 732
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 3 cut(s) 55, 480, 748
PinAI ACCGGT 1 cut(s) 281
PleI GAGTC 2 cut(s) 359, 530
PluTI GGCGCC 3 cut(s) 231, 629, 717
PmaCI CACGTG 2 cut(s) 470, 887
PmlI CACGTG 2 cut(s) 470, 887
PpsI GAGTC 2 cut(s) 359, 530
Ppu21I YACGTR 2 cut(s) 470, 887
PshAI GACNNNNGTC 1 cut(s) 470
PspCI CACGTG 2 cut(s) 470, 887
PspFI CCCAGC 1 cut(s) 241
PspN4I GGNNCC 8 cut(s) 121, 229, 286, 607, 627, 687, 715, 769
PspPI GGNCC 4 cut(s) 284, 322, 327, 600
RsaI GTAC 1 cut(s) 793
RsaNI GTAC 1 cut(s) 792
RseI CAYNNNNRTG 2 cut(s) 548, 889
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 2 cut(s) 30, 898
Sau3AI GATC 2 cut(s) 566, 658
Sau96I GGNCC 4 cut(s) 284, 322, 327, 600
SchI GAGTC 2 cut(s) 359, 530
ScrFI CCNGG 8 cut(s) 69, 289, 326, 476, 477, 509, 556, 599
SduI GDGCHC 1 cut(s) 545
SfoI GGCGCC 3 cut(s) 229, 627, 715
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 2 cut(s) 284, 322
SmaI CCCGGG 1 cut(s) 477
SmiMI CAYNNNNRTG 2 cut(s) 548, 889
Sse9I AATT 3 cut(s) 14, 302, 813
SseBI AGGCCT 1 cut(s) 216
SspDI GGCGCC 3 cut(s) 227, 625, 713
StuI AGGCCT 1 cut(s) 216
StyD4I CCNGG 8 cut(s) 67, 287, 324, 474, 475, 507, 554, 597
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 2 cut(s) 130, 694
TaiI ACGT 6 cut(s) 428, 438, 472, 548, 723, 889
TaqI TCGA 6 cut(s) 60, 420, 438, 504, 534, 645
TasI AATT 3 cut(s) 14, 302, 813
TauI GCSGC 6 cut(s) 168, 201, 233, 255, 332, 768
TfiI GAWTC 3 cut(s) 55, 480, 748
Tru1I TTAA 2 cut(s) 30, 898
Tru9I TTAA 2 cut(s) 30, 898
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 4 cut(s) 72, 195, 700, 829
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 1 cut(s) 8
TspGWI ACGGA 3 cut(s) 340, 538, 689
TspMI CCCGGG 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 284, 322
XapI RAATTY 2 cut(s) 14, 302
XmaI CCCGGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.