AT3G62260

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012149
Physical Location & Seq
Reverse (-)
23038266 .. 23040668
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62260.2

Sequence Viewer

Length: 1152 bp
ATGGTAGCAGAAGCAGAGGTTGTGTTTCAACAGAGTTTACCGGCGGTTCTGGAGATTGAGTTGTTTGACGGAGTTTCCTCCGCCGTTAAATCTCCCGTTTCTTCTCCGAAATTGGGTTTTACTCAGTCAACGGCGTCGGTTTCCGGAAGTTTAACGACTTCTCCTGTGGCTGATATCTTTCCAGAGGGTGATTGCGATCCTAGTGTCTTGGATTATATTCCGACCATCCGGTCTGGAAGCTTTGCTGATATTGGGCCAAAGAGAAACATGGAAGATGAACACATTCGCATAGACGATTTATCTTCTCAAGTTGGTTCCCTTTTTGAGTTGCCGAAGCCTAGTGCTTTCTATGCGGTTTTTGACGGGCATGGAGGACCAGAAGCAGCAGCATACGTACGGGAAAATGCCATTAGGTTTTTCTTTGAAGATGAGCAGTTTCCACAGACATCGGAAGTGAGTAGTGTTTATGTGGAAGAAGTTGAGACTTCATTGAGAAATGCGTTTCTTCAAGCTGATCTAGCTTTGGCAGAGGATTGCAGTATCAGCGATTCTTGTGGTACCACCGCTCTGACTGCTCTTATTTGTGGAAGACTCTTAATGGTTGCAAATGCCGGAGACTGCAGAGCGGTTCTATGCAGGAAAGGCAGAGCGATAGACATGTCTGAAGACCATAAACCGATTAATCTACTTGAGAGAAGAAGAGTGGAGGAATCCGGCGGTTTCATCACTAATGACGGTTACCTAAATGAAGTCCTAGCTGTAACCCGAGCTCTGGGCGACTGGGATTTAAAACTGCCACACGGCTCTCAATCTCCACTGATCTCGGAACCAGAAATCAAGCAGATAACTCTAACTGAAGACGATGAGTTTCTTGTGATTGGGTGCGATGGGATTTGGGATGTCTTGACGAGCCAAGAAGCGGTTAGCATTGTTAGGCGTGGCTTAAACCGGCACAACGATCCAACAAGATGTGCGCGAGAGCTAGTGATGGAGGCTCTGGGGCGGAACTCATTTGATAATTTAACTGCGGTGGTGGTATGTTTCATGACAATGGACAGAGGGGACAAGCCGGTGGTGCCATTGGAGAAGAGAAGGTGTTTTAGTCTTTCGCCTGAAGCTTTCTGTAGCTTGAGGAATCTGTTGGATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

383

Amino Acids

41.84

Weight (kDa)

4.54

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 88 - 341 5.3e-69 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62260 AT3G62260 AT3G62260
fragaria_vesca FvH4_1g26700 FvH4_1g26700
malus_domestica MD09G1287100.v1.1
prunus_persica Prupe.3G006100_v2.0.a1
pyrus_communis pycom09g19420 pycom17g27730
rosa_chinensis RchiOBHm_Chr3g0486881
rosa_laevigata RLG00000023049
rosa_multiflora Rmu_sc0003470.1_g000010
rosa_roxburghii Rroxscaffold_6G00395430
rosa_rugosa Rorug03G0228500
rosa_samantha Rh3AG277700 Rh3BG313500 Rh3CG312000 Rh3DG308300
rosa_wichuraiana Rw3G024660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 229
Acc65I GGTACC 1 cut(s) 557
AccB1I GGYRCC 2 cut(s) 557, 1075
AccBSI CCGCTC 2 cut(s) 566, 626
AccII CGCG 1 cut(s) 976
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 9 cut(s) 44, 81, 353, 564, 626, 717, 920, 1003, 1028
AclWI GGATC 2 cut(s) 191, 953
AcuI CTGAAG 3 cut(s) 684, 876, 1134
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 2 cut(s) 396, 559
AfiI CCNNNNNNNGG 3 cut(s) 113, 772, 919
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 3 cut(s) 29, 425, 509
AluBI AGCT 8 cut(s) 240, 512, 521, 758, 770, 982, 1118, 1128
AluI AGCT 8 cut(s) 240, 512, 521, 758, 770, 982, 1118, 1128
Alw21I GWGCWC 1 cut(s) 772
Alw26I GTCTC 2 cut(s) 476, 609
AlwI GGATC 2 cut(s) 191, 953
Ama87I CYCGRG 1 cut(s) 765
Aor13HI TCCGGA 1 cut(s) 143
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 383, 386
AseI ATTAAT 1 cut(s) 681
Asp700I GAANNNNTTC 1 cut(s) 282
Asp718I GGTACC 1 cut(s) 557
AspLEI GCGC 1 cut(s) 976
AspS9I GGNCC 2 cut(s) 254, 374
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 765
AvaII GGWCC 1 cut(s) 374
BanI GGYRCC 2 cut(s) 557, 1075
BanII GRGCYC 1 cut(s) 772
BbsI GAAGAC 3 cut(s) 595, 672, 864
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 2 cut(s) 395, 398
BccI CCATC 4 cut(s) 233, 881, 982, 1139
BceAI ACGGC 3 cut(s) 68, 147, 817
BcoDI GTCTC 2 cut(s) 476, 609
BfaI CTAG 5 cut(s) 201, 339, 518, 755, 983
BfmI CTRYAG 2 cut(s) 619, 1123
BisI GCNGC 2 cut(s) 384, 387
BlsI GCNGC 2 cut(s) 385, 388
Bme18I GGWCC 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 765
BmgT120I GGNCC 2 cut(s) 254, 374
BmiI GGNNCC 4 cut(s) 316, 559, 828, 1077
BmrI ACTGGG 1 cut(s) 790
BmuI ACTGGG 1 cut(s) 790
BpiI GAAGAC 3 cut(s) 595, 672, 864
BpmI CTGGAG 1 cut(s) 71
BpuEI CTTGAG 3 cut(s) 291, 710, 1150
BsaAI YACGTR 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 134
BsaWI WCCGGW 2 cut(s) 143, 228
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 145, 175
Bsc4I CCNNNNNNNGG 3 cut(s) 113, 772, 919
Bse118I RCCGGY 3 cut(s) 40, 948, 1069
Bse1I ACTGG 1 cut(s) 785
Bse8I GATNNNNATC 1 cut(s) 195
BseAI TCCGGA 1 cut(s) 143
BseGI GGATG 3 cut(s) 225, 904, 1150
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 3 cut(s) 113, 772, 919
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 785
BseXI GCAGC 2 cut(s) 395, 398
Bsh1236I CGCG 1 cut(s) 976
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 2 cut(s) 557, 1075
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 1 cut(s) 765
BsiSI CCGG 7 cut(s) 41, 144, 229, 612, 714, 949, 1070
BsiWI CGTACG 1 cut(s) 394
BslFI GGGAC 1 cut(s) 1076
BslI CCNNNNNNNGG 3 cut(s) 113, 772, 919
BsmAI GTCTC 2 cut(s) 476, 609
BsmFI GGGAC 1 cut(s) 1076
BsnI GGCC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 765
Bsp1286I GDGCHC 1 cut(s) 772
Bsp13I TCCGGA 1 cut(s) 143
Bsp143I GATC 4 cut(s) 196, 514, 819, 958
BspACI CCGC 9 cut(s) 44, 81, 353, 564, 626, 717, 920, 1003, 1028
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 1 cut(s) 136
BspEI TCCGGA 1 cut(s) 143
BspFNI CGCG 1 cut(s) 976
BspHI TCATGA 1 cut(s) 1044
BspLI GGNNCC 4 cut(s) 316, 559, 828, 1077
BspMAI CTGCAG 1 cut(s) 623
BspPI GGATC 2 cut(s) 191, 953
BspT107I GGYRCC 2 cut(s) 557, 1075
BsrBI CCGCTC 2 cut(s) 566, 626
BsrFI RCCGGY 3 cut(s) 40, 948, 1069
BsrI ACTGG 1 cut(s) 785
BssAI RCCGGY 3 cut(s) 40, 948, 1069
BssMI GATC 4 cut(s) 196, 514, 819, 958
BssNI GRCGYC 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 737
Bst6I CTCTTC 2 cut(s) 694, 1082
BstACI GRCGYC 1 cut(s) 134
BstBAI YACGTR 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 737
BstF5I GGATG 3 cut(s) 225, 904, 1150
BstFNI CGCG 1 cut(s) 976
BstHHI GCGC 1 cut(s) 976
BstKTI GATC 4 cut(s) 199, 517, 822, 961
BstMAI GTCTC 2 cut(s) 476, 609
BstMBI GATC 4 cut(s) 196, 514, 819, 958
BstMWI GCNNNNNNNGC 6 cut(s) 350, 518, 543, 572, 642, 1075
BstNSI RCATGY 1 cut(s) 661
BstPI GGTNACC 1 cut(s) 737
BstSFI CTRYAG 2 cut(s) 619, 1123
BstSNI TACGTA 1 cut(s) 394
BstUI CGCG 1 cut(s) 976
BstV1I GCAGC 2 cut(s) 395, 398
BstV2I GAAGAC 3 cut(s) 595, 672, 864
BsuRI GGCC 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 900
BtsCI GGATG 3 cut(s) 225, 904, 1150
BtsIMutI CAGTG 1 cut(s) 815
CciI TCATGA 1 cut(s) 1044
CfoI GCGC 1 cut(s) 976
Cfr10I RCCGGY 3 cut(s) 40, 948, 1069
Cfr13I GGNCC 2 cut(s) 254, 374
CseI GACGC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 395, 558
CviAII CATG 4 cut(s) 268, 368, 658, 1045
CviQI GTAC 2 cut(s) 395, 558
DdeI CTNAG 1 cut(s) 123
DpnI GATC 4 cut(s) 198, 516, 821, 960
DpnII GATC 4 cut(s) 196, 514, 819, 958
DraI TTTAAA 1 cut(s) 789
DrdI GACNNNNNNGTC 1 cut(s) 229
DseDI GACNNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 694, 1082
EarI CTCTTC 2 cut(s) 694, 1082
EciI GGCGGA 2 cut(s) 70, 1018
Ecl136II GAGCTC 1 cut(s) 770
Eco105I TACGTA 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 772
Eco32I GATATC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 374
Eco53kI GAGCTC 1 cut(s) 770
Eco57I CTGAAG 3 cut(s) 684, 876, 1134
Eco88I CYCGRG 1 cut(s) 765
Eco91I GGTNACC 1 cut(s) 737
EcoICRI GAGCTC 1 cut(s) 770
EcoO65I GGTNACC 1 cut(s) 737
EcoRV GATATC 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 772
FaeI CATG 4 cut(s) 271, 371, 661, 1048
FaqI GGGAC 1 cut(s) 1076
FatI CATG 4 cut(s) 267, 367, 657, 1044
Fnu4HI GCNGC 2 cut(s) 384, 387
FokI GGATG 2 cut(s) 212, 911
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 2 cut(s) 384, 387
FspBI CTAG 5 cut(s) 201, 339, 518, 755, 983
GlaI GCGC 1 cut(s) 975
GluI GCNGC 2 cut(s) 384, 387
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 256
HapII CCGG 7 cut(s) 41, 144, 229, 612, 714, 949, 1070
HgaI GACGC 1 cut(s) 123
HhaI GCGC 1 cut(s) 976
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 4 cut(s) 271, 371, 661, 1048
Hin6I GCGC 1 cut(s) 974
HinP1I GCGC 1 cut(s) 974
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 2 cut(s) 238, 1116
HinfI GANTC 4 cut(s) 548, 591, 710, 1135
HpaII CCGG 7 cut(s) 41, 144, 229, 612, 714, 949, 1070
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 38, 129
Hpy188I TCNGA 6 cut(s) 108, 222, 451, 570, 664, 826
Hpy188III TCNNGA 6 cut(s) 50, 144, 182, 234, 904, 1045
Hpy8I GTNNAC 2 cut(s) 38, 129
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 1086
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 4 cut(s) 537, 605, 621, 636
HpyF10VI GCNNNNNNNGC 6 cut(s) 350, 518, 543, 572, 642, 1075
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 393
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 4 cut(s) 271, 371, 661, 1048
HspAI GCGC 1 cut(s) 974
Kpn2I TCCGGA 1 cut(s) 143
KpnI GGTACC 1 cut(s) 561
Kzo9I GATC 4 cut(s) 196, 514, 819, 958
Lsp1109I GCAGC 2 cut(s) 395, 398
MaeI CTAG 5 cut(s) 201, 339, 518, 755, 983
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 737, 760
MalI GATC 4 cut(s) 198, 516, 821, 960
MbiI CCGCTC 2 cut(s) 566, 626
MboI GATC 4 cut(s) 196, 514, 819, 958
MhlI GDGCHC 1 cut(s) 772
MluCI AATT 2 cut(s) 110, 1018
MlyI GAGTC 1 cut(s) 585
MmeI TCCRAC 3 cut(s) 245, 986, 1122
MnlI CCTC 9 cut(s) 10, 88, 178, 365, 523, 700, 985, 1052, 1125
MroI TCCGGA 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 7 cut(s) 87, 152, 596, 681, 788, 944, 1022
MslI CAYNNNNRTG 1 cut(s) 1049
MspI CCGG 7 cut(s) 41, 144, 229, 612, 714, 949, 1070
MvnI CGCG 1 cut(s) 976
MwoI GCNNNNNNNGC 6 cut(s) 350, 518, 543, 572, 642, 1075
NdeII GATC 4 cut(s) 196, 514, 819, 958
NlaIII CATG 4 cut(s) 271, 371, 661, 1048
NlaIV GGNNCC 4 cut(s) 316, 559, 828, 1077
NspI RCATGY 1 cut(s) 661
PagI TCATGA 1 cut(s) 1044
PciI ACATGT 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 3 cut(s) 548, 710, 1135
Pfl23II CGTACG 1 cut(s) 394
PkrI GCNGC 2 cut(s) 385, 388
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
Ppu21I YACGTR 1 cut(s) 394
PscI ACATGT 1 cut(s) 657
PshBI ATTAAT 1 cut(s) 681
Psp124BI GAGCTC 1 cut(s) 772
PspEI GGTNACC 1 cut(s) 737
PspLI CGTACG 1 cut(s) 394
PspN4I GGNNCC 4 cut(s) 316, 559, 828, 1077
PspPI GGNCC 2 cut(s) 254, 374
PstI CTGCAG 1 cut(s) 623
RsaI GTAC 2 cut(s) 396, 559
RsaNI GTAC 2 cut(s) 395, 558
RseI CAYNNNNRTG 1 cut(s) 1049
SacI GAGCTC 1 cut(s) 772
SaqAI TTAA 7 cut(s) 87, 152, 596, 681, 788, 944, 1022
SatI GCNGC 2 cut(s) 384, 387
Sau3AI GATC 4 cut(s) 196, 514, 819, 958
Sau96I GGNCC 2 cut(s) 254, 374
SchI GAGTC 1 cut(s) 585
SduI GDGCHC 1 cut(s) 772
SfcI CTRYAG 2 cut(s) 619, 1123
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 1049
SmlI CTYRAG 3 cut(s) 306, 689, 1129
SmoI CTYRAG 3 cut(s) 306, 689, 1129
SnaBI TACGTA 1 cut(s) 394
Sse9I AATT 2 cut(s) 110, 1018
SsiI CCGC 9 cut(s) 44, 81, 353, 564, 626, 717, 920, 1003, 1028
SspMI CTAG 5 cut(s) 201, 339, 518, 755, 983
SstI GAGCTC 1 cut(s) 772
TaaI ACNGT 1 cut(s) 737
TaiI ACGT 1 cut(s) 396
TasI AATT 2 cut(s) 110, 1018
TfiI GAWTC 3 cut(s) 548, 710, 1135
Tru1I TTAA 7 cut(s) 87, 152, 596, 681, 788, 944, 1022
Tru9I TTAA 7 cut(s) 87, 152, 596, 681, 788, 944, 1022
TscAI CASTG 1 cut(s) 822
TseI GCWGC 2 cut(s) 383, 386
TspDTI ATGAA 5 cut(s) 291, 477, 712, 762, 1033
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 822
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 1 cut(s) 681
XceI RCATGY 1 cut(s) 661
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 5 cut(s) 201, 339, 518, 755, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.