Prupe.3G006100_v2.0.a1

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012149
Physical Location & Seq
Forward (+)
366566 .. 369707
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G006100.1

Sequence Viewer

Length: 1194 bp
ATGGTGGCAGAAGCTAAGATTGTGTGTCAGCAGAGCGTGCCCGTTTTGGAGGTTCAGTATTTTGGTAAAGGGACTAATGTTCATGAGGTTGAAGATGTAGTTGCAGTTTCACAGTCGATTTCGCCCAAGAGTTTTGACCGAAATCGTGCTTCGGAATCCGTCTCCGATGCTATAACGAGCTCTCAAGTCGATGTTAAACCTGCGGATAAAATTCCTGATTTGGCTCTAGAATCGGCTGATCTTCAATTCTTCCCTAGGCTCCGTTCTGGTAGCTTTGCTGACATCGGACCCCGTAGATATATGGAAGATGAACATATACTAATAGATGATCTATCTTCACACTTGGGATCACTCTTTAATTTTCCCACGCCAAGTGCCTTGTATGGGGTATTTGATGGACATGGAGGACCTGAAGCGGCATCTTATGTCAGAAAAAATATGCTCAGATTTTTTTTTGAAGATGCCAATTTTCCTCAGATTTCTGAAGTTGATGAGATTTTCTCAGAGGAGCTTGAGAACTCCCTCCGTAAGGCATTTCATCTGGTTGACCTTGCGCTGGCAGATGACCGCAGTGTAAGCAGTTCATCTGGGACAACAGCATTAACTGCTATGATATTTGGAAGGCTTCTAATGGTAGCCAATGCTGGGGATTGTCGAGCTGTTCTCTGCCGGAAAGGAGAGGCAATCGATATGTCTCAAGACCACAGGCCCATTTATCCCTCAGAAAGGAAGCGGGTTGAAGAATTGGGTGGATATGTTGATGATGGGTATCTGAATGGCGTCTTATCGGTAACCCGAGCATTAGGTGACTGGGACATGAAGTTTCCCCGTGGTTCTTCATCACCCCTTATTGCTGATCCAGAGTTCCGGCAAGTGGTTTTAACAGAGGATGATGAGTTTCTCATTATAGGGTGTGATGGGATTTGGGATGTGATGTCAAGTCAGCATGCAGTTAGCCTTGTTCGACGTGGGCTACGGCGGCATGATGACCCGGAGCAGTGCGCAAGGGATCTTGTTATGGAGGCTCTTCGCCTCAACACGTTTGATAATCTCACTGTGATTGTGGTATGCTTCTCCCCTCTTGATCATCGAGAACCATCACCACAGCGGGAACGAAGATTTAGGTGCTGCAGCCTCTCTGCGGAGGCCCTATGTAGTTTGAGGAACTTGTTGGACAGCAGTGCCAGCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

398

Amino Acids

44.05

Weight (kDa)

4.85

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62260 AT3G62260 AT3G62260
fragaria_vesca FvH4_1g26700 FvH4_1g26700
malus_domestica MD09G1287100.v1.1
prunus_persica Prupe.3G006100_v2.0.a1
pyrus_communis pycom09g19420 pycom17g27730
rosa_chinensis RchiOBHm_Chr3g0486881
rosa_laevigata RLG00000023049
rosa_multiflora Rmu_sc0003470.1_g000010
rosa_roxburghii Rroxscaffold_6G00395430
rosa_rugosa Rorug03G0228500
rosa_samantha Rh3AG277700 Rh3BG313500 Rh3CG312000 Rh3DG308300
rosa_wichuraiana Rw3G024660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1003
Acc36I ACCTGC 1 cut(s) 208
AciI CCGC 8 cut(s) 203, 416, 568, 733, 979, 1108, 1142, 1188
AclWI GGATC 3 cut(s) 355, 851, 1017
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 2 cut(s) 432, 504
AcyI GRCGYC 1 cut(s) 780
AfiI CCNNNNNNNGG 7 cut(s) 384, 529, 556, 645, 726, 874, 1141
AflIII ACRYGT 1 cut(s) 1038
AgsI TTSAA 4 cut(s) 92, 245, 458, 740
AjiI CACGTC 1 cut(s) 968
AluBI AGCT 5 cut(s) 14, 180, 273, 511, 659
AluI AGCT 5 cut(s) 14, 180, 273, 511, 659
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 166, 699
AlwI GGATC 3 cut(s) 355, 851, 1017
Ama87I CYCGRG 1 cut(s) 795
AoxI GGCC 2 cut(s) 707, 1146
ApeKI GCWGC 2 cut(s) 1128, 1131
ApoI RAATTY 1 cut(s) 210
AspA2I CCTAGG 1 cut(s) 254
AspLEI GCGC 2 cut(s) 556, 1004
AspS9I GGNCC 4 cut(s) 287, 407, 708, 1147
AsuC2I CCSGG 1 cut(s) 992
AsuHPI GGTGA 3 cut(s) 818, 834, 1092
AvaI CYCGRG 1 cut(s) 795
AvaII GGWCC 2 cut(s) 287, 407
AvrII CCTAGG 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 1115, 1143
BccI CCATC 4 cut(s) 389, 758, 911, 1105
BceAI ACGGC 1 cut(s) 992
BclI TGATCA 1 cut(s) 1084
BcnI CCSGG 1 cut(s) 992
BcoDI GTCTC 2 cut(s) 166, 699
BfaI CTAG 2 cut(s) 227, 255
BfmI CTRYAG 1 cut(s) 1129
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 4 cut(s) 417, 980, 1129, 1132
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 4 cut(s) 418, 981, 1130, 1133
Bme1390I CCNGG 1 cut(s) 992
Bme18I GGWCC 2 cut(s) 287, 407
BmeT110I CYCGRG 1 cut(s) 795
BmgBI CACGTC 1 cut(s) 968
BmgT120I GGNCC 4 cut(s) 287, 407, 708, 1147
BmiI GGNNCC 2 cut(s) 260, 289
BmrFI CCNGG 1 cut(s) 992
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 3 cut(s) 157, 428, 451
BmuI ACTGGG 1 cut(s) 820
BplI GAGNNNNNCTC 4 cut(s) 485, 517, 648, 680
BpuEI CTTGAG 3 cut(s) 168, 533, 681
BpuMI CCSGG 1 cut(s) 992
Bsa29I ATCGAT 1 cut(s) 687
BsaBI GATNNNNATC 1 cut(s) 768
BsaHI GRCGYC 1 cut(s) 780
BsaJI CCNNGG 2 cut(s) 254, 829
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 7 cut(s) 384, 529, 556, 645, 726, 874, 1141
Bse1I ACTGG 1 cut(s) 815
Bse8I GATNNNNATC 1 cut(s) 768
BseCI ATCGAT 1 cut(s) 687
BseDI CCNNGG 2 cut(s) 254, 829
BseGI GGATG 2 cut(s) 895, 934
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 7 cut(s) 384, 529, 556, 645, 726, 874, 1141
BseMII CTCAG 4 cut(s) 457, 488, 516, 735
BseNI ACTGG 1 cut(s) 815
BseRI GAGGAG 1 cut(s) 521
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 2 cut(s) 1115, 1143
BseYI CCCAGC 1 cut(s) 644
BshFI GGCC 2 cut(s) 709, 1148
BshVI ATCGAT 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 795
BsiSI CCGG 3 cut(s) 670, 868, 992
BslFI GGGAC 3 cut(s) 85, 604, 827
BslI CCNNNNNNNGG 7 cut(s) 384, 529, 556, 645, 726, 874, 1141
BsmAI GTCTC 2 cut(s) 166, 699
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 3 cut(s) 85, 604, 827
BsnI GGCC 2 cut(s) 709, 1148
BsoBI CYCGRG 1 cut(s) 795
Bsp1286I GDGCHC 2 cut(s) 42, 182
Bsp143I GATC 6 cut(s) 238, 328, 347, 856, 1009, 1084
BspACI CCGC 8 cut(s) 203, 416, 568, 733, 979, 1108, 1142, 1188
BspANI GGCC 2 cut(s) 709, 1148
BspCNI CTCAG 4 cut(s) 456, 487, 515, 734
BspDI ATCGAT 1 cut(s) 687
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 260, 289
BspMAI CTGCAG 1 cut(s) 1133
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 3 cut(s) 355, 851, 1017
BspQI GCTCTTC 1 cut(s) 1032
BsrI ACTGG 1 cut(s) 815
BssECI CCNNGG 2 cut(s) 254, 829
BssMI GATC 6 cut(s) 238, 328, 347, 856, 1009, 1084
BssNI GRCGYC 1 cut(s) 780
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 114, 1057
Bst6I CTCTTC 1 cut(s) 1032
BstACI GRCGYC 1 cut(s) 780
BstAPI GCANNNNNTGC 2 cut(s) 37, 605
BstC8I GCNNGC 4 cut(s) 38, 558, 948, 1186
BstDEI CTNAG 5 cut(s) 15, 443, 474, 502, 721
BstDSI CCRYGG 1 cut(s) 829
BstEII GGTNACC 1 cut(s) 790
BstENI CCTNNNNNAGG 2 cut(s) 527, 724
BstF5I GGATG 2 cut(s) 895, 934
BstHHI GCGC 2 cut(s) 556, 1004
BstKTI GATC 6 cut(s) 241, 331, 350, 859, 1012, 1087
BstMAI GTCTC 2 cut(s) 166, 699
BstMBI GATC 6 cut(s) 238, 328, 347, 856, 1009, 1084
BstMWI GCNNNNNNNGC 5 cut(s) 37, 576, 605, 979, 1185
BstNSI RCATGY 1 cut(s) 950
BstPI GGTNACC 1 cut(s) 790
BstSCI CCNGG 1 cut(s) 990
BstSFI CTRYAG 1 cut(s) 1129
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 1115, 1143
BstX2I RGATCY 1 cut(s) 1009
BstYI RGATCY 1 cut(s) 1009
Bsu15I ATCGAT 1 cut(s) 687
BsuRI GGCC 2 cut(s) 709, 1148
BsuTUI ATCGAT 1 cut(s) 687
BtgI CCRYGG 1 cut(s) 829
BtrI CACGTC 1 cut(s) 968
BtsCI GGATG 2 cut(s) 895, 934
BtsI GCAGTG 3 cut(s) 577, 1004, 1186
BtsIMutI CAGTG 4 cut(s) 577, 1004, 1053, 1186
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 4 cut(s) 38, 558, 948, 1186
CciI TCATGA 1 cut(s) 82
CfoI GCGC 2 cut(s) 556, 1004
Cfr13I GGNCC 4 cut(s) 287, 407, 708, 1147
ClaI ATCGAT 1 cut(s) 687
CseI GACGC 1 cut(s) 769
CviAII CATG 5 cut(s) 83, 401, 817, 947, 983
DdeI CTNAG 5 cut(s) 15, 443, 474, 502, 721
DpnI GATC 6 cut(s) 240, 330, 349, 858, 1011, 1086
DpnII GATC 6 cut(s) 238, 328, 347, 856, 1009, 1084
Eam1104I CTCTTC 1 cut(s) 1032
EarI CTCTTC 1 cut(s) 1032
Ecl136II GAGCTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 287, 407
Eco53kI GAGCTC 1 cut(s) 180
Eco57I CTGAAG 2 cut(s) 432, 504
Eco88I CYCGRG 1 cut(s) 795
Eco91I GGTNACC 1 cut(s) 790
EcoICRI GAGCTC 1 cut(s) 180
EcoNI CCTNNNNNAGG 2 cut(s) 527, 724
EcoO109I RGGNCCY 2 cut(s) 407, 1147
EcoO65I GGTNACC 1 cut(s) 790
EcoT14I CCWWGG 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 5 cut(s) 86, 404, 820, 950, 986
FaqI GGGAC 3 cut(s) 85, 604, 827
FatI CATG 5 cut(s) 82, 400, 816, 946, 982
FauI CCCGC 2 cut(s) 726, 1101
FbaI TGATCA 1 cut(s) 1084
Fnu4HI GCNGC 4 cut(s) 417, 980, 1129, 1132
FokI GGATG 2 cut(s) 902, 941
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 4 cut(s) 417, 980, 1129, 1132
FspBI CTAG 2 cut(s) 227, 255
FspI TGCGCA 1 cut(s) 1003
GlaI GCGC 2 cut(s) 555, 1003
GluI GCNGC 4 cut(s) 417, 980, 1129, 1132
GsaI CCCAGC 1 cut(s) 648
HaeIII GGCC 2 cut(s) 709, 1148
HapII CCGG 3 cut(s) 670, 868, 992
HgaI GACGC 1 cut(s) 769
HhaI GCGC 2 cut(s) 556, 1004
Hin1I GRCGYC 1 cut(s) 780
Hin1II CATG 5 cut(s) 86, 404, 820, 950, 986
Hin6I GCGC 2 cut(s) 554, 1002
HinP1I GCGC 2 cut(s) 554, 1002
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 2 cut(s) 155, 230
HpaII CCGG 3 cut(s) 670, 868, 992
HphI GGTGA 3 cut(s) 818, 834, 1092
Hpy166II GTNNAC 1 cut(s) 547
Hpy188III TCNNGA 7 cut(s) 83, 215, 227, 698, 860, 1082, 1091
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 1 cut(s) 969
HpyAV CCTTC 1 cut(s) 615
HpyCH4III ACNGT 2 cut(s) 114, 1057
HpyCH4IV ACGT 2 cut(s) 967, 1040
HpyCH4V TGCA 3 cut(s) 104, 950, 1131
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 576, 605, 979, 1185
HpyF3I CTNAG 5 cut(s) 15, 443, 474, 502, 721
HpySE526I ACGT 2 cut(s) 967, 1040
Hsp92I GRCGYC 1 cut(s) 780
Hsp92II CATG 5 cut(s) 86, 404, 820, 950, 986
HspAI GCGC 2 cut(s) 554, 1002
Ksp22I TGATCA 1 cut(s) 1084
Kzo9I GATC 6 cut(s) 238, 328, 347, 856, 1009, 1084
LguI GCTCTTC 1 cut(s) 1032
LmnI GCTCC 3 cut(s) 264, 508, 994
Lsp1109I GCAGC 2 cut(s) 1115, 1143
LweI GCATC 3 cut(s) 157, 428, 451
MaeI CTAG 2 cut(s) 227, 255
MaeII ACGT 2 cut(s) 967, 1040
MaeIII GTNAC 2 cut(s) 790, 806
MalI GATC 6 cut(s) 240, 330, 349, 858, 1011, 1086
MboI GATC 6 cut(s) 238, 328, 347, 856, 1009, 1084
MflI RGATCY 1 cut(s) 1009
MhlI GDGCHC 2 cut(s) 42, 182
MluCI AATT 5 cut(s) 210, 245, 358, 466, 743
MmeI TCCRAC 1 cut(s) 1152
MseI TTAA 4 cut(s) 195, 357, 602, 881
MspA1I CMGCKG 2 cut(s) 1108, 1188
MspI CCGG 3 cut(s) 670, 868, 992
MspR9I CCNGG 1 cut(s) 992
MwoI GCNNNNNNNGC 5 cut(s) 37, 576, 605, 979, 1185
NciI CCSGG 1 cut(s) 992
NdeII GATC 6 cut(s) 238, 328, 347, 856, 1009, 1084
NlaIII CATG 5 cut(s) 86, 404, 820, 950, 986
NlaIV GGNNCC 2 cut(s) 260, 289
NmuCI GTSAC 1 cut(s) 806
NsbI TGCGCA 1 cut(s) 1003
NspI RCATGY 1 cut(s) 950
PaeI GCATGC 1 cut(s) 950
PagI TCATGA 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 1032
PfeI GAWTC 2 cut(s) 155, 230
PkrI GCNGC 4 cut(s) 418, 981, 1130, 1133
PpuMI RGGWCCY 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 407
PspEI GGTNACC 1 cut(s) 790
PspFI CCCAGC 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 260, 289
PspPI GGNCC 4 cut(s) 287, 407, 708, 1147
PspPPI RGGWCCY 1 cut(s) 407
PstI CTGCAG 1 cut(s) 1133
PsuI RGATCY 1 cut(s) 1009
SacI GAGCTC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 1032
SaqAI TTAA 4 cut(s) 195, 357, 602, 881
SatI GCNGC 4 cut(s) 417, 980, 1129, 1132
Sau3AI GATC 6 cut(s) 238, 328, 347, 856, 1009, 1084
Sau96I GGNCC 4 cut(s) 287, 407, 708, 1147
ScrFI CCNGG 1 cut(s) 992
SduI GDGCHC 2 cut(s) 42, 182
SfaNI GCATC 3 cut(s) 157, 428, 451
SfcI CTRYAG 1 cut(s) 1129
SinI GGWCC 2 cut(s) 287, 407
SmlI CTYRAG 3 cut(s) 183, 512, 696
SmoI CTYRAG 3 cut(s) 183, 512, 696
SphI GCATGC 1 cut(s) 950
Sse9I AATT 5 cut(s) 210, 245, 358, 466, 743
SsiI CCGC 8 cut(s) 203, 416, 568, 733, 979, 1108, 1142, 1188
SspMI CTAG 2 cut(s) 227, 255
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 990
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 114, 1057
TaiI ACGT 2 cut(s) 970, 1043
TaqI TCGA 6 cut(s) 116, 189, 655, 687, 964, 1090
TaqII GACCGA 1 cut(s) 153
TasI AATT 5 cut(s) 210, 245, 358, 466, 743
TauI GCSGC 2 cut(s) 419, 982
TfiI GAWTC 2 cut(s) 155, 230
Tru1I TTAA 4 cut(s) 195, 357, 602, 881
Tru9I TTAA 4 cut(s) 195, 357, 602, 881
TscAI CASTG 4 cut(s) 577, 1004, 1060, 1186
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 2 cut(s) 1128, 1131
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 6 cut(s) 71, 324, 527, 573, 828, 833
TspGWI ACGGA 3 cut(s) 148, 251, 515
TspRI CASTG 4 cut(s) 577, 1004, 1060, 1186
VpaK11BI GGWCC 2 cut(s) 287, 407
XagI CCTNNNNNAGG 2 cut(s) 527, 724
XapI RAATTY 1 cut(s) 210
XbaI TCTAGA 1 cut(s) 226
XceI RCATGY 1 cut(s) 950
XmaJI CCTAGG 1 cut(s) 254
XspI CTAG 2 cut(s) 227, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.