FvH4_1g26700

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012149
Physical Location & Seq
Forward (+)
18543456 .. 18546369
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26700.t2

Sequence Viewer

Length: 1164 bp
ATGGTGGCAGAAACTAAGATCATGTGTCAGCAGAACGTTGAGGTGTTTGGTAAAGGGATGAACGTTCATGAGGTTGTTGAAGATGTAGTTGCATCGATTTCTCCGAAGACTTTGTTTGACCCAACTCGCCCTCTGGAGTCGGTTTCCCCTGCTGCCCAACCTGATGGTAAACCGGCAGATAAAGTTTCAGACTTGGCTCATGAGACGGCTGACCAGGAATTCTTTCCCAGGCTCCGTTCTGGTAGCTTCGCTGACATTGGACCCCGTAGATACATGGAAGATGAACATATACTGATAGATGATCTATCTTCACACTTGGGATCGCTCTTTAGTTTTCCCACCCCAAGTGCTTTTTATGGGGTATTTGATGGACATGGAGGACCTGAAGCAGCAGCTTATGTTCGAAAAAATGTGATGAGACTCTTGTTTGATGATGTCAATTTTCCCCGAGCTTCTGAGGTTAATAAGATTTTCTTAGAGGAGCTGGAGACTACTCTAAGTAACGCATTTCATCAGGTAGACCTTGCATTGGCAGATGACTGCAGCGTAAGCAGTTCATCTGGGACAACAGCACTAACTGCTATGATCTTTGGAAGGCTTTTGATAGTAGCCAATGCTGGTGATTGTCGAGCTGTTCTCTGCAGGAAGGGAGAGGCAATTGATATGTCCCAAGACCATAGGCCAATTTATCCCTCTGAACGCAAGAGAGTTGAAGAACTGGGGGGATATGTTGATGATGGGTATCTGAATGGTGTCTTATCAGTTTCCCGAGCCTTAGGTGACTGGGACATGAAGTTTCCTCGTGGTTCTGCTTCACCCCTTATAGCTGAACCAGAGTTCCGAAGGATGGATTTAACAGAGGAAGATGAGTTTCTCATTATAGGGTGTGATGGGATCTGGGATGTGATGTCAAGTCAGCATGCAGTTAGCCTTGTTCGCCGTGGGCTGCGGCGGCATGATGACCCAGAGCAGTGTGCCAAGGATCTAGTCATGGAGGCTCTTCGCCTCAACACGTTTGATAATCTTACAGTGATTGTTGTGTGCTTCTCTTCTCTTGATCAGCGGGAACCATTATCACCGCCTCGGGAACGAAGATATAGGTGTTGCAGCCTCTCTGCGGAGGCCCTTTGTAGCCTGAGGAACTTGTTGGACAGCAGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

388

Amino Acids

42.87

Weight (kDa)

4.85

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 89 - 199 5.1e-08 Protein phosphatase 2C
PP2C PF00481 196 - 325 8.2e-39 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012149)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62260 AT3G62260 AT3G62260
fragaria_vesca FvH4_1g26700 FvH4_1g26700
malus_domestica MD09G1287100.v1.1
prunus_persica Prupe.3G006100_v2.0.a1
pyrus_communis pycom09g19420 pycom17g27730
rosa_chinensis RchiOBHm_Chr3g0486881
rosa_laevigata RLG00000023049
rosa_multiflora Rmu_sc0003470.1_g000010
rosa_roxburghii Rroxscaffold_6G00395430
rosa_rugosa Rorug03G0228500
rosa_samantha Rh3AG277700 Rh3BG313500 Rh3CG312000 Rh3DG308300
rosa_wichuraiana Rw3G024660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 519
AciI CCGC 5 cut(s) 949, 952, 1063, 1079, 1118
AclI AACGTT 2 cut(s) 36, 63
AclWI GGATC 3 cut(s) 328, 902, 990
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 405
AfiI CCNNNNNNNGG 3 cut(s) 529, 847, 1117
AflIII ACRYGT 1 cut(s) 1011
AgsI TTSAA 2 cut(s) 80, 713
AjnI CCWGG 2 cut(s) 213, 227
AloI GAACNNNNNNTCC 2 cut(s) 822, 854
AluBI AGCT 6 cut(s) 246, 395, 452, 484, 632, 827
AluI AGCT 6 cut(s) 246, 395, 452, 484, 632, 827
Alw26I GTCTC 3 cut(s) 197, 412, 482
AlwI GGATC 3 cut(s) 328, 902, 990
AlwNI CAGNNNCTG 1 cut(s) 1161
Ama87I CYCGRG 3 cut(s) 447, 768, 1083
AoxI GGCC 2 cut(s) 680, 1122
ApeKI GCWGC 6 cut(s) 152, 389, 392, 543, 946, 1107
ApoI RAATTY 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 222
AspS9I GGNCC 3 cut(s) 260, 380, 1123
AsuHPI GGTGA 4 cut(s) 632, 791, 807, 1068
AsuII TTCGAA 1 cut(s) 403
AvaI CYCGRG 3 cut(s) 447, 768, 1083
AvaII GGWCC 2 cut(s) 260, 380
AxyI CCTNAGG 2 cut(s) 775, 1136
BauI CACGAG 1 cut(s) 801
BbsI GAAGAC 1 cut(s) 113
BbvI GCAGC 6 cut(s) 139, 401, 404, 555, 933, 1119
BccI CCATC 5 cut(s) 158, 362, 731, 841, 884
BceAI ACGGC 2 cut(s) 222, 924
BciT130I CCWGG 2 cut(s) 215, 229
BclI TGATCA 1 cut(s) 1057
BcoDI GTCTC 3 cut(s) 197, 412, 482
BfaI CTAG 1 cut(s) 986
BfmI CTRYAG 2 cut(s) 541, 640
BisI GCNGC 8 cut(s) 153, 390, 393, 544, 947, 950, 953, 1108
BlsI GCNGC 8 cut(s) 154, 391, 394, 545, 948, 951, 954, 1109
Bme1390I CCNGG 2 cut(s) 215, 229
Bme18I GGWCC 2 cut(s) 260, 380
BmeT110I CYCGRG 3 cut(s) 447, 768, 1083
BmgT120I GGNCC 3 cut(s) 260, 380, 1123
BmiI GGNNCC 3 cut(s) 233, 262, 1068
BmrFI CCNGG 2 cut(s) 215, 229
BmrI ACTGGG 2 cut(s) 728, 793
BmsI GCATC 1 cut(s) 101
BmuI ACTGGG 2 cut(s) 728, 793
BpiI GAAGAC 1 cut(s) 113
BplI GAGNNNNNCTC 2 cut(s) 621, 653
BpmI CTGGAG 2 cut(s) 155, 506
Bpu14I TTCGAA 1 cut(s) 403
Bsa29I ATCGAT 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 4 cut(s) 227, 940, 978, 1082
Bsc4I CCNNNNNNNGG 3 cut(s) 529, 847, 1117
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 723, 788
Bse21I CCTNAGG 2 cut(s) 775, 1136
Bse8I GATNNNNATC 1 cut(s) 741
BseBI CCWGG 2 cut(s) 215, 229
BseCI ATCGAT 1 cut(s) 95
BseDI CCNNGG 4 cut(s) 227, 940, 978, 1082
BseGI GGATG 3 cut(s) 63, 852, 907
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 3 cut(s) 529, 847, 1117
BseMII CTCAG 2 cut(s) 447, 1127
BseNI ACTGG 2 cut(s) 723, 788
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 6 cut(s) 139, 401, 404, 555, 933, 1119
BshFI GGCC 2 cut(s) 682, 1124
BshVI ATCGAT 1 cut(s) 95
BsiHKCI CYCGRG 3 cut(s) 447, 768, 1083
BsiSI CCGG 1 cut(s) 173
BslFI GGGAC 3 cut(s) 577, 652, 800
BslI CCNNNNNNNGG 3 cut(s) 529, 847, 1117
BsmAI GTCTC 3 cut(s) 197, 412, 482
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 3 cut(s) 577, 652, 800
BsnI GGCC 2 cut(s) 682, 1124
BsoBI CYCGRG 3 cut(s) 447, 768, 1083
Bsp119I TTCGAA 1 cut(s) 403
Bsp143I GATC 7 cut(s) 18, 301, 320, 585, 894, 982, 1057
BspACI CCGC 5 cut(s) 949, 952, 1063, 1079, 1118
BspANI GGCC 2 cut(s) 682, 1124
BspCNI CTCAG 2 cut(s) 448, 1128
BspDI ATCGAT 1 cut(s) 95
BspHI TCATGA 2 cut(s) 67, 199
BspLI GGNNCC 3 cut(s) 233, 262, 1068
BspMAI CTGCAG 2 cut(s) 545, 644
BspPI GGATC 3 cut(s) 328, 902, 990
BspQI GCTCTTC 1 cut(s) 1005
BspT104I TTCGAA 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 2 cut(s) 723, 788
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 4 cut(s) 227, 940, 978, 1082
BssMI GATC 7 cut(s) 18, 301, 320, 585, 894, 982, 1057
BssSI CACGAG 1 cut(s) 801
BssT1I CCWWGG 1 cut(s) 978
Bst2BI CACGAG 1 cut(s) 801
Bst2UI CCWGG 2 cut(s) 215, 229
Bst4CI ACNGT 1 cut(s) 1030
Bst6I CTCTTC 2 cut(s) 1005, 1054
BstAPI GCANNNNNTGC 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 403
BstC8I GCNNGC 1 cut(s) 921
BstDEI CTNAG 6 cut(s) 15, 456, 475, 497, 775, 1136
BstDSI CCRYGG 1 cut(s) 940
BstF5I GGATG 3 cut(s) 63, 852, 907
BstKTI GATC 7 cut(s) 21, 304, 323, 588, 897, 985, 1060
BstMAI GTCTC 3 cut(s) 197, 412, 482
BstMBI GATC 7 cut(s) 18, 301, 320, 585, 894, 982, 1057
BstMWI GCNNNNNNNGC 4 cut(s) 549, 578, 936, 952
BstNI CCWGG 2 cut(s) 215, 229
BstNSI RCATGY 1 cut(s) 923
BstSCI CCNGG 2 cut(s) 213, 227
BstSFI CTRYAG 2 cut(s) 541, 640
BstV1I GCAGC 6 cut(s) 139, 401, 404, 555, 933, 1119
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 2 cut(s) 894, 982
BstXI CCANNNNNNTGG 1 cut(s) 164
BstYI RGATCY 2 cut(s) 894, 982
Bsu15I ATCGAT 1 cut(s) 95
Bsu36I CCTNAGG 2 cut(s) 775, 1136
BsuRI GGCC 2 cut(s) 682, 1124
BsuTUI ATCGAT 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 940
BtsCI GGATG 3 cut(s) 63, 852, 907
BtsI GCAGTG 2 cut(s) 977, 1162
BtsIMutI CAGTG 3 cut(s) 977, 1035, 1162
Cac8I GCNNGC 1 cut(s) 921
CaiI CAGNNNCTG 1 cut(s) 1161
CciI TCATGA 2 cut(s) 67, 199
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 260, 380, 1123
ClaI ATCGAT 1 cut(s) 95
CviAII CATG 9 cut(s) 22, 68, 200, 274, 374, 790, 920, 956, 991
DdeI CTNAG 6 cut(s) 15, 456, 475, 497, 775, 1136
DpnI GATC 7 cut(s) 20, 303, 322, 587, 896, 984, 1059
DpnII GATC 7 cut(s) 18, 301, 320, 585, 894, 982, 1057
Eam1104I CTCTTC 2 cut(s) 1005, 1054
EarI CTCTTC 2 cut(s) 1005, 1054
Eco130I CCWWGG 1 cut(s) 978
Eco47I GGWCC 2 cut(s) 260, 380
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 2 cut(s) 775, 1136
Eco88I CYCGRG 3 cut(s) 447, 768, 1083
EcoO109I RGGNCCY 2 cut(s) 380, 1123
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 213, 227
EcoT14I CCWWGG 1 cut(s) 978
ErhI CCWWGG 1 cut(s) 978
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 9 cut(s) 25, 71, 203, 277, 377, 793, 923, 959, 994
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 3 cut(s) 577, 652, 800
FatI CATG 9 cut(s) 21, 67, 199, 273, 373, 789, 919, 955, 990
FauI CCCGC 1 cut(s) 1056
FbaI TGATCA 1 cut(s) 1057
FblI GTMKAC 1 cut(s) 519
Fnu4HI GCNGC 8 cut(s) 153, 390, 393, 544, 947, 950, 953, 1108
FokI GGATG 3 cut(s) 70, 859, 914
Fsp4HI GCNGC 8 cut(s) 153, 390, 393, 544, 947, 950, 953, 1108
FspBI CTAG 1 cut(s) 986
GluI GCNGC 8 cut(s) 153, 390, 393, 544, 947, 950, 953, 1108
GsuI CTGGAG 2 cut(s) 155, 506
HaeIII GGCC 2 cut(s) 682, 1124
HapII CCGG 1 cut(s) 173
Hin1II CATG 9 cut(s) 25, 71, 203, 277, 377, 793, 923, 959, 994
HinfI GANTC 2 cut(s) 137, 420
HpaII CCGG 1 cut(s) 173
HphI GGTGA 4 cut(s) 632, 791, 807, 1068
Hpy166II GTNNAC 2 cut(s) 170, 520
Hpy188I TCNGA 6 cut(s) 105, 190, 457, 697, 747, 842
Hpy188III TCNNGA 6 cut(s) 68, 134, 200, 768, 1055, 1085
Hpy8I GTNNAC 2 cut(s) 170, 520
HpyAV CCTTC 3 cut(s) 588, 640, 837
HpyCH4III ACNGT 1 cut(s) 1030
HpyCH4IV ACGT 3 cut(s) 36, 63, 1013
HpyCH4V TGCA 6 cut(s) 92, 527, 543, 642, 923, 1107
HpyF10VI GCNNNNNNNGC 4 cut(s) 549, 578, 936, 952
HpyF3I CTNAG 6 cut(s) 15, 456, 475, 497, 775, 1136
HpySE526I ACGT 3 cut(s) 36, 63, 1013
Hsp92II CATG 9 cut(s) 25, 71, 203, 277, 377, 793, 923, 959, 994
Ksp22I TGATCA 1 cut(s) 1057
Kzo9I GATC 7 cut(s) 18, 301, 320, 585, 894, 982, 1057
LguI GCTCTTC 1 cut(s) 1005
LmnI GCTCC 2 cut(s) 237, 481
Lsp1109I GCAGC 6 cut(s) 139, 401, 404, 555, 933, 1119
LweI GCATC 1 cut(s) 101
MaeI CTAG 1 cut(s) 986
MaeII ACGT 3 cut(s) 36, 63, 1013
MaeIII GTNAC 2 cut(s) 500, 779
MalI GATC 7 cut(s) 20, 303, 322, 587, 896, 984, 1059
MboI GATC 7 cut(s) 18, 301, 320, 585, 894, 982, 1057
MboII GAAGA 9 cut(s) 92, 118, 290, 300, 725, 875, 992, 1041, 1104
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 2 cut(s) 894, 982
MluCI AATT 4 cut(s) 218, 439, 657, 684
MlyI GAGTC 2 cut(s) 146, 414
MmeI TCCRAC 1 cut(s) 1128
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 2 cut(s) 462, 854
MspA1I CMGCKG 1 cut(s) 1063
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 215, 229
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 2 cut(s) 215, 229
MwoI GCNNNNNNNGC 4 cut(s) 549, 578, 936, 952
NdeII GATC 7 cut(s) 18, 301, 320, 585, 894, 982, 1057
NlaIII CATG 9 cut(s) 25, 71, 203, 277, 377, 793, 923, 959, 994
NlaIV GGNNCC 3 cut(s) 233, 262, 1068
NmuCI GTSAC 1 cut(s) 779
NspI RCATGY 1 cut(s) 923
NspV TTCGAA 1 cut(s) 403
PaeI GCATGC 1 cut(s) 923
PagI TCATGA 2 cut(s) 67, 199
PciSI GCTCTTC 1 cut(s) 1005
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 222
PkrI GCNGC 8 cut(s) 154, 391, 394, 545, 948, 951, 954, 1109
PleI GAGTC 2 cut(s) 145, 414
PpsI GAGTC 2 cut(s) 145, 414
PpuMI RGGWCCY 1 cut(s) 380
Psp1406I AACGTT 2 cut(s) 36, 63
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 2 cut(s) 213, 227
PspGI CCWGG 2 cut(s) 213, 227
PspN4I GGNNCC 3 cut(s) 233, 262, 1068
PspPI GGNCC 3 cut(s) 260, 380, 1123
PspPPI RGGWCCY 1 cut(s) 380
PstI CTGCAG 2 cut(s) 545, 644
PstNI CAGNNNCTG 1 cut(s) 1161
PsuI RGATCY 2 cut(s) 894, 982
SapI GCTCTTC 1 cut(s) 1005
SaqAI TTAA 2 cut(s) 462, 854
SatI GCNGC 8 cut(s) 153, 390, 393, 544, 947, 950, 953, 1108
Sau3AI GATC 7 cut(s) 18, 301, 320, 585, 894, 982, 1057
Sau96I GGNCC 3 cut(s) 260, 380, 1123
SchI GAGTC 2 cut(s) 146, 414
ScrFI CCNGG 2 cut(s) 215, 229
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 2 cut(s) 541, 640
SfuI TTCGAA 1 cut(s) 403
SinI GGWCC 2 cut(s) 260, 380
SphI GCATGC 1 cut(s) 923
Sse9I AATT 4 cut(s) 218, 439, 657, 684
SsiI CCGC 5 cut(s) 949, 952, 1063, 1079, 1118
SspMI CTAG 1 cut(s) 986
StyD4I CCNGG 2 cut(s) 213, 227
StyI CCWWGG 1 cut(s) 978
TaaI ACNGT 1 cut(s) 1030
TaiI ACGT 3 cut(s) 39, 66, 1016
TaqI TCGA 3 cut(s) 95, 403, 628
TasI AATT 4 cut(s) 218, 439, 657, 684
TauI GCSGC 2 cut(s) 952, 955
Tru1I TTAA 2 cut(s) 462, 854
Tru9I TTAA 2 cut(s) 462, 854
TscAI CASTG 3 cut(s) 977, 1035, 1162
TseFI GTSAC 1 cut(s) 779
TseI GCWGC 6 cut(s) 152, 389, 392, 543, 946, 1107
Tsp45I GTSAC 1 cut(s) 779
TspDTI ATGAA 6 cut(s) 56, 74, 297, 500, 546, 806
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 3 cut(s) 977, 1035, 1162
VpaK11BI GGWCC 2 cut(s) 260, 380
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 923
XmiI GTMKAC 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.