pycom17g27730

phosphatase 2c

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
25842374 .. 25844578
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g27730.3

Sequence Viewer

Length: 1260 bp
ATGGTGGCAGAAGCTAAGGTTGTGTGCCAGCAGAGCGTGCCGGTGCTGGATGTTGAGTACTTTGCCAAAAATGTTCACGAGGTTGAAGATGTAGTTGCAGTTACCCCATCGATTTCGTCGCCCAAAAGTTTTGACCTGAATCGTGCTTCGGAACCCGTCTCCGCCGCCGCCCTCTTGAGCTCCCAAGCCGTGAGTTTTCCGATCCTCAAGTTCCCTGCTTTTGGATTATTTAATCTTGTAGTTGTTAAATTCCATGATGTTAAACCTGTGGATAAAATTCCAGATTTGGTTCCTGCCTCGGCCGACCAGCAATTCTTCCCCAGGCTGCGTTCTGGTAGTTTTGCTGACATTGGACCCCGTAGATACATGGAAGATGAACATCTTCTAATAGATGATCTATCTTCACACTTGGGATCGCTCTCTAATTTTCCCAAGCCAAATGCATTTTATGGGGTATTTGATGGACATGGAGGACCCGAAGCAGCAGCTTACGTCCGGCAAAATGTGCTCAGACTCTTTTTTGAAGGTGCCAATTTTCCCCGAACTTCTGACGGTGATGAAATGTTCTCAGAGGAGCTTGAGAACTCCCTCCGCAAGGCATTTCATCTGGTTGACCTTGCTTTGGCTGATGACTGCAGTGTAAGCAGTTCTTCGGGGACAACAGCATTAACTGCTATGATATTTGGAAGGCTTTTAATGGTGGCCAATGCTGGGGATTGCCGAGCAGTACTCTGTCGGAAAGGAGAAGCAATCGATATGTCTCAAGACCACAGGCCAATATATCCCTCAGAAAGGAGGCGGGTTGAAGAATTAGGTGGATATGTTGATGATGTGTATCTGAATGGTGTCTTATCTGTTACCCGAGCATTAGGCGACTGGGACATGAAGTTTCCTCGTCGATCTTCGTCACCCCTTATTGCCGAGCCAGAGTTTCGGCAGGTGGTTTTAACAGAGGATGATGAGTTTCTAATTATAGGGTGTGACGGGATTTGGGATGTGATGTCTAGTCAGCATGCTGTTAGCCTTGTTCGCCGTGGGCTGAGGCGGCATGATGACCCTGACCAGTGTGCCAGGGACCTTGTCATGGAGGCTGTTCGCCTCAAAACGTTTGATAACCTCACTGTTATCGTTGTATGCTTCTCCCCCCTTGATCACCGGGATCCATCACCACAGCGAGAACGGAGATTAAGGGGCTGCAGCCTCTCTGCTGAGGCCCTTTGTAGTTTGAGGGCCTTGCTGGACAGCAGTGCCAGCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

420

Amino Acids

46.27

Weight (kDa)

5.11

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012149)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 928
Acc36I ACCTGC 1 cut(s) 928
AccB1I GGYRCC 1 cut(s) 527
AciI CCGC 7 cut(s) 162, 165, 168, 592, 799, 1045, 1254
AclI AACGTT 1 cut(s) 1106
AclWI GGATC 4 cut(s) 196, 421, 1154, 1167
AcoI YGGCCR 2 cut(s) 300, 702
AcsI RAATTY 2 cut(s) 248, 276
AfaI GTAC 2 cut(s) 59, 729
AfiI CCNNNNNNNGG 6 cut(s) 221, 595, 622, 711, 792, 1084
AgsI TTSAA 3 cut(s) 86, 524, 806
AjnI CCWGG 2 cut(s) 320, 1070
AluBI AGCT 4 cut(s) 14, 180, 488, 577
AluI AGCT 4 cut(s) 14, 180, 488, 577
Alw21I GWGCWC 2 cut(s) 182, 510
Alw26I GTCTC 2 cut(s) 163, 765
AlwI GGATC 4 cut(s) 196, 421, 1154, 1167
AlwNI CAGNNNCTG 1 cut(s) 1257
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 5 cut(s) 300, 702, 773, 1212, 1230
ApeKI GCWGC 5 cut(s) 325, 482, 485, 1194, 1197
ApoI RAATTY 2 cut(s) 248, 276
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 5 cut(s) 353, 473, 1075, 1213, 1230
AsuC2I CCSGG 1 cut(s) 1157
AsuHPI GGTGA 4 cut(s) 566, 900, 1145, 1158
AvaI CYCGRG 1 cut(s) 861
AvaII GGWCC 3 cut(s) 353, 473, 1075
BalI TGGCCA 1 cut(s) 704
BamHI GGATCC 1 cut(s) 1159
BanI GGYRCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 182
BauI CACGAG 1 cut(s) 77
Bbv12I GWGCWC 2 cut(s) 182, 510
BbvCI CCTCAGC 2 cut(s) 1040, 1209
BbvI GCAGC 5 cut(s) 312, 494, 497, 1181, 1209
BccI CCATC 3 cut(s) 115, 455, 1171
BceAI ACGGC 2 cut(s) 173, 1017
BciT130I CCWGG 2 cut(s) 322, 1072
BclI TGATCA 1 cut(s) 1150
BcnI CCSGG 1 cut(s) 1157
BcoDI GTCTC 2 cut(s) 163, 765
BfaI CTAG 1 cut(s) 1005
BfmI CTRYAG 2 cut(s) 634, 1195
BfuAI ACCTGC 1 cut(s) 928
BisI GCNGC 9 cut(s) 165, 168, 326, 483, 486, 1046, 1195, 1198, 1255
BlsI GCNGC 9 cut(s) 166, 169, 327, 484, 487, 1047, 1196, 1199, 1256
BmcAI AGTACT 2 cut(s) 59, 729
Bme1390I CCNGG 3 cut(s) 322, 1072, 1157
Bme18I GGWCC 3 cut(s) 353, 473, 1075
BmeT110I CYCGRG 1 cut(s) 861
BmgT120I GGNCC 5 cut(s) 353, 473, 1075, 1213, 1230
BmiI GGNNCC 7 cut(s) 153, 291, 355, 475, 529, 1076, 1161
BmrFI CCNGG 3 cut(s) 322, 1072, 1157
BmrI ACTGGG 1 cut(s) 886
BmuI ACTGGG 1 cut(s) 886
BplI GAGNNNNNCTC 2 cut(s) 714, 746
Bpu10I CCTNAGC 3 cut(s) 15, 1040, 1209
BpuEI CTTGAG 4 cut(s) 191, 196, 599, 747
BpuMI CCSGG 1 cut(s) 1157
Bsa29I ATCGAT 2 cut(s) 110, 753
BsaBI GATNNNNATC 2 cut(s) 378, 834
BsaJI CCNNGG 4 cut(s) 297, 320, 1033, 1071
Bsc4I CCNNNNNNNGG 6 cut(s) 221, 595, 622, 711, 792, 1084
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 881, 1063
Bse8I GATNNNNATC 2 cut(s) 378, 834
BseBI CCWGG 2 cut(s) 322, 1072
BseCI ATCGAT 2 cut(s) 110, 753
BseDI CCNNGG 4 cut(s) 297, 320, 1033, 1071
BseGI GGATG 3 cut(s) 55, 961, 1000
BseJI GATNNNNATC 2 cut(s) 378, 834
BseLI CCNNNNNNNGG 6 cut(s) 221, 595, 622, 711, 792, 1084
BseMII CTCAG 5 cut(s) 523, 582, 801, 1031, 1200
BseNI ACTGG 2 cut(s) 881, 1063
BseRI GAGGAG 1 cut(s) 587
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 5 cut(s) 312, 494, 497, 1181, 1209
BseYI CCCAGC 1 cut(s) 710
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 5 cut(s) 302, 704, 775, 1214, 1232
BshNI GGYRCC 1 cut(s) 527
BshVI ATCGAT 2 cut(s) 110, 753
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 2 cut(s) 182, 510
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 3 cut(s) 41, 496, 1156
BslFI GGGAC 3 cut(s) 670, 893, 1088
BslI CCNNNNNNNGG 6 cut(s) 221, 595, 622, 711, 792, 1084
BsmAI GTCTC 2 cut(s) 163, 765
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 3 cut(s) 670, 893, 1088
BsnI GGCC 5 cut(s) 302, 704, 775, 1214, 1232
BsoBI CYCGRG 1 cut(s) 861
Bsp1286I GDGCHC 2 cut(s) 182, 510
Bsp143I GATC 6 cut(s) 201, 394, 413, 899, 1150, 1159
BspACI CCGC 7 cut(s) 162, 165, 168, 592, 799, 1045, 1254
BspANI GGCC 5 cut(s) 302, 704, 775, 1214, 1232
BspCNI CTCAG 5 cut(s) 522, 581, 800, 1032, 1201
BspDI ATCGAT 2 cut(s) 110, 753
BspLI GGNNCC 7 cut(s) 153, 291, 355, 475, 529, 1076, 1161
BspMAI CTGCAG 2 cut(s) 638, 1199
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 4 cut(s) 196, 421, 1154, 1167
BspT107I GGYRCC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 2 cut(s) 881, 1063
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 4 cut(s) 297, 320, 1033, 1071
BssMI GATC 6 cut(s) 201, 394, 413, 899, 1150, 1159
BssSI CACGAG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 2 cut(s) 322, 1072
Bst4CI ACNGT 2 cut(s) 554, 1123
BstAPI GCANNNNNTGC 3 cut(s) 37, 505, 671
BstC8I GCNNGC 4 cut(s) 29, 38, 1014, 1252
BstDEI CTNAG 6 cut(s) 15, 509, 568, 787, 1040, 1209
BstDSI CCRYGG 1 cut(s) 1033
BstENI CCTNNNNNAGG 2 cut(s) 593, 790
BstF5I GGATG 3 cut(s) 55, 961, 1000
BstKTI GATC 6 cut(s) 204, 397, 416, 902, 1153, 1162
BstMAI GTCTC 2 cut(s) 163, 765
BstMBI GATC 6 cut(s) 201, 394, 413, 899, 1150, 1159
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 8 cut(s) 33, 37, 505, 642, 671, 1029, 1045, 1251
BstNI CCWGG 2 cut(s) 322, 1072
BstNSI RCATGY 1 cut(s) 1016
BstSCI CCNGG 3 cut(s) 320, 1070, 1155
BstSFI CTRYAG 2 cut(s) 634, 1195
BstV1I GCAGC 5 cut(s) 312, 494, 497, 1181, 1209
BstX2I RGATCY 1 cut(s) 1159
BstYI RGATCY 1 cut(s) 1159
BstZI CGGCCG 1 cut(s) 300
Bsu15I ATCGAT 2 cut(s) 110, 753
BsuRI GGCC 5 cut(s) 302, 704, 775, 1214, 1232
BsuTUI ATCGAT 2 cut(s) 110, 753
BtgI CCRYGG 1 cut(s) 1033
BtsCI GGATG 3 cut(s) 55, 961, 1000
BtsI GCAGTG 2 cut(s) 643, 1252
BtsIMutI CAGTG 4 cut(s) 643, 1070, 1119, 1252
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 4 cut(s) 29, 38, 1014, 1252
CaiI CAGNNNCTG 1 cut(s) 1257
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 5 cut(s) 353, 473, 1075, 1213, 1230
ClaI ATCGAT 2 cut(s) 110, 753
Csp6I GTAC 2 cut(s) 58, 728
CviAII CATG 7 cut(s) 254, 367, 467, 883, 1013, 1049, 1084
CviQI GTAC 2 cut(s) 58, 728
DdeI CTNAG 6 cut(s) 15, 509, 568, 787, 1040, 1209
DpnI GATC 6 cut(s) 203, 396, 415, 901, 1152, 1161
DpnII GATC 6 cut(s) 201, 394, 413, 899, 1150, 1159
EaeI YGGCCR 2 cut(s) 300, 702
EagI CGGCCG 1 cut(s) 300
EciI GGCGGA 1 cut(s) 151
Ecl136II GAGCTC 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 3 cut(s) 353, 473, 1075
Eco52I CGGCCG 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 861
EcoICRI GAGCTC 1 cut(s) 180
EcoNI CCTNNNNNAGG 2 cut(s) 593, 790
EcoO109I RGGNCCY 4 cut(s) 473, 1075, 1213, 1230
EcoRII CCWGG 2 cut(s) 320, 1070
EcoT22I ATGCAT 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 7 cut(s) 257, 370, 470, 886, 1016, 1052, 1087
FalI AAGNNNNNCTT 2 cut(s) 634, 666
FaqI GGGAC 3 cut(s) 670, 893, 1088
FatI CATG 7 cut(s) 253, 366, 466, 882, 1012, 1048, 1083
FauI CCCGC 1 cut(s) 792
FbaI TGATCA 1 cut(s) 1150
Fnu4HI GCNGC 9 cut(s) 165, 168, 326, 483, 486, 1046, 1195, 1198, 1255
FokI GGATG 3 cut(s) 62, 968, 1007
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 9 cut(s) 165, 168, 326, 483, 486, 1046, 1195, 1198, 1255
FspBI CTAG 1 cut(s) 1005
GluI GCNGC 9 cut(s) 165, 168, 326, 483, 486, 1046, 1195, 1198, 1255
GsaI CCCAGC 1 cut(s) 714
HaeIII GGCC 5 cut(s) 302, 704, 775, 1214, 1232
HapII CCGG 3 cut(s) 41, 496, 1156
Hin1II CATG 7 cut(s) 257, 370, 470, 886, 1016, 1052, 1087
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 2 cut(s) 139, 513
HpaII CCGG 3 cut(s) 41, 496, 1156
HphI GGTGA 4 cut(s) 566, 900, 1145, 1158
Hpy166II GTNNAC 2 cut(s) 76, 613
Hpy188I TCNGA 8 cut(s) 151, 201, 512, 550, 571, 738, 790, 840
Hpy188III TCNNGA 4 cut(s) 77, 175, 281, 764
Hpy8I GTNNAC 2 cut(s) 76, 613
Hpy99I CGWCG 2 cut(s) 121, 900
HpyAV CCTTC 2 cut(s) 518, 681
HpyCH4III ACNGT 2 cut(s) 554, 1123
HpyCH4IV ACGT 2 cut(s) 492, 1106
HpyCH4V TGCA 4 cut(s) 98, 443, 636, 1197
HpyF10VI GCNNNNNNNGC 8 cut(s) 33, 37, 505, 642, 671, 1029, 1045, 1251
HpyF3I CTNAG 6 cut(s) 15, 509, 568, 787, 1040, 1209
HpySE526I ACGT 2 cut(s) 492, 1106
Hsp92II CATG 7 cut(s) 257, 370, 470, 886, 1016, 1052, 1087
Ksp22I TGATCA 1 cut(s) 1150
Kzo9I GATC 6 cut(s) 201, 394, 413, 899, 1150, 1159
LmnI GCTCC 2 cut(s) 185, 574
Lsp1109I GCAGC 5 cut(s) 312, 494, 497, 1181, 1209
MaeI CTAG 1 cut(s) 1005
MaeII ACGT 2 cut(s) 492, 1106
MaeIII GTNAC 4 cut(s) 100, 856, 906, 980
MalI GATC 6 cut(s) 203, 396, 415, 901, 1152, 1161
MboI GATC 6 cut(s) 201, 394, 413, 899, 1150, 1159
MboII GAAGA 8 cut(s) 98, 307, 374, 383, 393, 642, 818, 894
MflI RGATCY 1 cut(s) 1159
MhlI GDGCHC 2 cut(s) 182, 510
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 7 cut(s) 248, 276, 311, 424, 532, 809, 969
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 1 cut(s) 716
Mox20I TGGCCA 1 cut(s) 704
Mph1103I ATGCAT 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 1 cut(s) 704
MseI TTAA 7 cut(s) 231, 246, 261, 668, 695, 947, 1187
Msp20I TGGCCA 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 1254
MspI CCGG 3 cut(s) 41, 496, 1156
MspR9I CCNGG 3 cut(s) 322, 1072, 1157
MvaI CCWGG 2 cut(s) 322, 1072
MwoI GCNNNNNNNGC 8 cut(s) 33, 37, 505, 642, 671, 1029, 1045, 1251
NciI CCSGG 1 cut(s) 1157
NdeII GATC 6 cut(s) 201, 394, 413, 899, 1150, 1159
NlaIII CATG 7 cut(s) 257, 370, 470, 886, 1016, 1052, 1087
NlaIV GGNNCC 7 cut(s) 153, 291, 355, 475, 529, 1076, 1161
NmeAIII GCCGAG 3 cut(s) 278, 746, 946
NmuCI GTSAC 2 cut(s) 906, 980
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 1 cut(s) 1016
PaeI GCATGC 1 cut(s) 1016
PaqCI CACCTGC 1 cut(s) 928
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 139
PflFI GACNNNGTC 1 cut(s) 1079
PkrI GCNGC 9 cut(s) 166, 169, 327, 484, 487, 1047, 1196, 1199, 1256
PleI GAGTC 1 cut(s) 507
PpsI GAGTC 1 cut(s) 507
PpuMI RGGWCCY 2 cut(s) 473, 1075
Psp124BI GAGCTC 1 cut(s) 182
Psp1406I AACGTT 1 cut(s) 1106
Psp5II RGGWCCY 2 cut(s) 473, 1075
Psp6I CCWGG 2 cut(s) 320, 1070
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 2 cut(s) 320, 1070
PspN4I GGNNCC 7 cut(s) 153, 291, 355, 475, 529, 1076, 1161
PspPI GGNCC 5 cut(s) 353, 473, 1075, 1213, 1230
PspPPI RGGWCCY 2 cut(s) 473, 1075
PstI CTGCAG 2 cut(s) 638, 1199
PstNI CAGNNNCTG 1 cut(s) 1257
PsuI RGATCY 1 cut(s) 1159
PsyI GACNNNGTC 1 cut(s) 1079
RsaI GTAC 2 cut(s) 59, 729
RsaNI GTAC 2 cut(s) 58, 728
SacI GAGCTC 1 cut(s) 182
SaqAI TTAA 7 cut(s) 231, 246, 261, 668, 695, 947, 1187
SatI GCNGC 9 cut(s) 165, 168, 326, 483, 486, 1046, 1195, 1198, 1255
Sau3AI GATC 6 cut(s) 201, 394, 413, 899, 1150, 1159
Sau96I GGNCC 5 cut(s) 353, 473, 1075, 1213, 1230
ScaI AGTACT 2 cut(s) 59, 729
SchI GAGTC 1 cut(s) 507
ScrFI CCNGG 3 cut(s) 322, 1072, 1157
SduI GDGCHC 2 cut(s) 182, 510
SfcI CTRYAG 2 cut(s) 634, 1195
SinI GGWCC 3 cut(s) 353, 473, 1075
SmlI CTYRAG 4 cut(s) 175, 206, 578, 762
SmoI CTYRAG 4 cut(s) 175, 206, 578, 762
SphI GCATGC 1 cut(s) 1016
Sse9I AATT 7 cut(s) 248, 276, 311, 424, 532, 809, 969
SsiI CCGC 7 cut(s) 162, 165, 168, 592, 799, 1045, 1254
SspMI CTAG 1 cut(s) 1005
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 320, 1070, 1155
TaaI ACNGT 2 cut(s) 554, 1123
TaiI ACGT 2 cut(s) 495, 1109
TaqI TCGA 3 cut(s) 110, 753, 898
TasI AATT 7 cut(s) 248, 276, 311, 424, 532, 809, 969
TatI WGTACW 2 cut(s) 57, 727
TauI GCSGC 4 cut(s) 167, 170, 1048, 1257
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 7 cut(s) 231, 246, 261, 668, 695, 947, 1187
Tru9I TTAA 7 cut(s) 231, 246, 261, 668, 695, 947, 1187
TscAI CASTG 4 cut(s) 643, 1070, 1126, 1252
TseFI GTSAC 2 cut(s) 906, 980
TseI GCWGC 5 cut(s) 325, 482, 485, 1194, 1197
Tsp45I GTSAC 2 cut(s) 906, 980
TspDTI ATGAA 4 cut(s) 390, 573, 593, 899
TspGWI ACGGA 1 cut(s) 1195
TspRI CASTG 4 cut(s) 643, 1070, 1126, 1252
Tth111I GACNNNGTC 1 cut(s) 1079
VpaK11BI GGWCC 3 cut(s) 353, 473, 1075
XagI CCTNNNNNAGG 2 cut(s) 593, 790
XapI RAATTY 2 cut(s) 248, 276
XceI RCATGY 1 cut(s) 1016
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 1 cut(s) 1005
ZrmI AGTACT 2 cut(s) 59, 729
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.