AT4G00467

Protein kinase C conserved region 2 (CalB)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0017563
Physical Location & Seq
Reverse (-)
214768 .. 216076
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00467.1

Sequence Viewer

Length: 609 bp
ATGAAGAGAGGGATATTGGAAGTATTTCTCATTGATGCTCATGGAATCACACACACAAATTTTATCGGAACTCCTGTGTATTATGTGCTCTTACAATGTGGGACAAAGGAATACCGTAGCAAAATGTCAAAAGGTGATAATGACAATGCATTGTGGAACCAAAAGTTTGTTTTCGATTTCCCGATGTCTCAATGGAAGAAACTGACCTATATCAAATTAAGAATCTTGGACAAAGAGCTCTTCAATGATGGTGGATTTGTCGGTGAAACCATAATTCATCTCGGAGGCATAATAACCGAAGGGCGTGACAGAGGATACATTGAAATAAAACCAGCTCCATACAATGTTGTTCTTGAGGACGATACTTTTAAAGGTGAACTAAAAGTCGGATTGAGATTCATTGCAACAGATAAATTGCAGAGGAAAGCATGGGAGCTGAAGATGGAGGCCAAAAACAGTGAAGAACTAATGATTTCTCCAATTCAGAATCTGATGAAACTCCCATTACTAAGGTTTATAGCTGCATGGGCAAGAAGGCAATGTCTCATCAATGCAAAACTACTTTATTGTTTCGTCGACTATAAGAAATGCCTTACTCCTTATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

202

Amino Acids

23.45

Weight (kDa)

9.16

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 4 - 100 6.7e-10 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00467 AT4G00467
fragaria_vesca FvH4_7g14250
malus_domestica MD01G1060400.v1.1 MD07G1137300.v1.1
prunus_persica Prupe.2G170300_v2.0.a1
pyrus_communis pycom07g13510
rosa_chinensis RchiOBHm_Chr1g0355241
rosa_laevigata RLG00000028169
rosa_roxburghii Rroxscaffold_4G00300570
rosa_rugosa Rorug01G0245700
rosa_wichuraiana Rw1G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 576
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 458
AgsI TTSAA 2 cut(s) 244, 323
AluBI AGCT 4 cut(s) 238, 335, 436, 521
AluI AGCT 4 cut(s) 238, 335, 436, 521
Alw21I GWGCWC 2 cut(s) 90, 240
Alw26I GTCTC 2 cut(s) 192, 548
AlwNI CAGNNNCTG 1 cut(s) 490
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 146, 275, 386
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 2 cut(s) 90, 240
BbvI GCAGC 1 cut(s) 508
BccI CCATC 2 cut(s) 242, 436
BciVI GTATCC 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 192, 548
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 374
Bse3DI GCAATG 2 cut(s) 399, 545
BseMI GCAATG 2 cut(s) 399, 545
BseXI GCAGC 1 cut(s) 508
BshFI GGCC 1 cut(s) 449
BsiHKAI GWGCWC 2 cut(s) 90, 240
BslFI GGGAC 1 cut(s) 115
BsmAI GTCTC 2 cut(s) 192, 548
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 90, 240
BspANI GGCC 1 cut(s) 449
BspLI GGNNCC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 245
BsrDI GCAATG 2 cut(s) 399, 545
Bst4CI ACNGT 2 cut(s) 116, 458
Bst6I CTCTTC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 509
BstMAI GTCTC 2 cut(s) 192, 548
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstV1I GCAGC 1 cut(s) 508
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 463
CaiI CAGNNNCTG 1 cut(s) 490
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 3 cut(s) 41, 429, 525
CviJI RGCY 5 cut(s) 238, 335, 436, 449, 521
CviKI_1 RGCY 5 cut(s) 238, 335, 436, 449, 521
DdeI CTNAG 1 cut(s) 509
DraI TTTAAA 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco53kI GAGCTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 3 cut(s) 44, 432, 528
FaqI GGGAC 1 cut(s) 115
FatI CATG 3 cut(s) 40, 428, 524
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 1 cut(s) 522
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 522
GluI GCNGC 1 cut(s) 522
HaeIII GGCC 1 cut(s) 449
Hin1II CATG 3 cut(s) 44, 432, 528
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 4 cut(s) 45, 222, 396, 487
HphI GGTGA 3 cut(s) 146, 275, 386
Hpy166II GTNNAC 2 cut(s) 377, 577
Hpy188I TCNGA 5 cut(s) 68, 284, 389, 486, 492
Hpy188III TCNNGA 2 cut(s) 181, 353
Hpy8I GTNNAC 2 cut(s) 377, 577
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 2 cut(s) 293, 528
HpyCH4III ACNGT 2 cut(s) 116, 458
HpyCH4V TGCA 5 cut(s) 149, 404, 418, 524, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 1 cut(s) 509
Hsp92II CATG 3 cut(s) 44, 432, 528
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 2 cut(s) 340, 433
LpnPI CCDG 2 cut(s) 87, 345
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 305
MboII GAAGA 5 cut(s) 16, 208, 232, 451, 473
MhlI GDGCHC 2 cut(s) 90, 240
MluCI AATT 5 cut(s) 58, 215, 273, 413, 480
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 5 cut(s) 278, 305, 349, 414, 439
Mph1103I ATGCAT 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 2 cut(s) 218, 369
MwoI GCNNNNNNNGC 1 cut(s) 527
NlaIII CATG 3 cut(s) 44, 432, 528
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 305
NsiI ATGCAT 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 4 cut(s) 45, 222, 396, 487
PkrI GCNGC 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 490
SacI GAGCTC 1 cut(s) 240
SalI GTCGAC 1 cut(s) 575
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 2 cut(s) 218, 369
SatI GCNGC 1 cut(s) 522
SduI GDGCHC 2 cut(s) 90, 240
SetI ASST 8 cut(s) 136, 209, 240, 337, 376, 438, 515, 523
SfaNI GCATC 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 5 cut(s) 58, 215, 273, 413, 480
SstI GAGCTC 1 cut(s) 240
TaaI ACNGT 2 cut(s) 116, 458
TaqI TCGA 2 cut(s) 174, 576
TasI AATT 5 cut(s) 58, 215, 273, 413, 480
TfiI GAWTC 4 cut(s) 45, 222, 396, 487
Tru1I TTAA 2 cut(s) 218, 369
Tru9I TTAA 2 cut(s) 218, 369
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 4 cut(s) 17, 266, 388, 509
TspRI CASTG 1 cut(s) 463
XapI RAATTY 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 576
XmnI GAANNNNTTC 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.