MD07G1137300.v1.1

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017563
Physical Location & Seq
Reverse (-)
20010709 .. 20011779
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1137300.v1.1.491

Sequence Viewer

Length: 474 bp
ATGCAGCCATACATGAAAGTAGGAACCCTTGAAGTGCTTCTTGTTGATGCTGAAGGCATTAGGCACACAAATCTTCTTGGTAGACCATCCTACTACGTGATCATAAAGTGTGGAAATCAAGAATATAGAAGCAAACAGTCATCAGGTGAAGATGAAAAGGTTAGCTGGAATGAAAAAATCACGTTTAAATTTCCCTTGTCAAATTGGAAGAAGCTGACTCATCTCAAACTCAGAATTATGGACACTGAATTATTCACAGATGCGGGATTTGTTGGTGAAACCATGATTCATCTTGGTGGTATAGTTACTGTGGGAAGGGACAGCGGTTTCATTGAATTAAAACCACTTCCATACAATGTGGTGCTTGAAGATGACACCTATAAAGGAGAGATAAGGATTGGATTCCGATTTACTGCAAATGTACGTATATACTTACATTTTGTGCTTAATGAATTCAATATAATCACGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

158

Amino Acids

18.12

Weight (kDa)

6.97

Isoelectric Point (pI)

26.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 8 - 102 3.9e-09 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00467 AT4G00467
fragaria_vesca FvH4_7g14250
malus_domestica MD01G1060400.v1.1 MD07G1137300.v1.1
prunus_persica Prupe.2G170300_v2.0.a1
pyrus_communis pycom07g13510
rosa_chinensis RchiOBHm_Chr1g0355241
rosa_laevigata RLG00000028169
rosa_roxburghii Rroxscaffold_4G00300570
rosa_rugosa Rorug01G0245700
rosa_wichuraiana Rw1G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AciI CCGC 2 cut(s) 263, 324
AcsI RAATTY 2 cut(s) 188, 452
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 1 cut(s) 423
AgsI TTSAA 4 cut(s) 32, 335, 368, 457
AluBI AGCT 2 cut(s) 165, 214
AluI AGCT 2 cut(s) 165, 214
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 188, 452
Asp700I GAANNNNTTC 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 158, 287
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 94
BclI TGATCA 1 cut(s) 99
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 2 cut(s) 37, 250
BsaAI YACGTR 2 cut(s) 97, 425
BseGI GGATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 16
BslFI GGGAC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 332
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 2 cut(s) 263, 324
BspCNI CTCAG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 25
BssMI GATC 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 138, 310
BstBAI YACGTR 2 cut(s) 97, 425
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 86
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstSNI TACGTA 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 243
Csp6I GTAC 1 cut(s) 422
CviAII CATG 2 cut(s) 13, 283
CviJI RGCY 3 cut(s) 7, 165, 214
CviKI_1 RGCY 3 cut(s) 7, 165, 214
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 1 cut(s) 230
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
DraI TTTAAA 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 452
FaeI CATG 2 cut(s) 16, 286
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 332
FatI CATG 2 cut(s) 12, 282
FauI CCCGC 1 cut(s) 256
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
Hin1II CATG 2 cut(s) 16, 286
HinfI GANTC 3 cut(s) 217, 286, 402
HphI GGTGA 2 cut(s) 158, 287
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 233, 407
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 47, 309
HpyCH4III ACNGT 2 cut(s) 138, 310
HpyCH4IV ACGT 3 cut(s) 96, 182, 424
HpyCH4V TGCA 2 cut(s) 4, 416
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 3 cut(s) 96, 182, 424
Hsp92II CATG 2 cut(s) 16, 286
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 2 cut(s) 129, 151
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 37, 250
MaeII ACGT 3 cut(s) 96, 182, 424
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 4 cut(s) 65, 161, 220, 380
MluCI AATT 6 cut(s) 188, 202, 234, 248, 335, 452
MlyI GAGTC 1 cut(s) 211
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 3 cut(s) 186, 338, 447
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 324
NdeII GATC 1 cut(s) 99
NlaIII CATG 2 cut(s) 16, 286
NlaIV GGNNCC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 286, 402
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 2 cut(s) 97, 425
PspN4I GGNNCC 1 cut(s) 25
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 3 cut(s) 186, 338, 447
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 99
SchI GAGTC 1 cut(s) 211
SetI ASST 8 cut(s) 99, 148, 162, 167, 185, 216, 380, 427
SfaNI GCATC 2 cut(s) 37, 250
SmiMI CAYNNNNRTG 1 cut(s) 294
SnaBI TACGTA 1 cut(s) 425
Sse9I AATT 6 cut(s) 188, 202, 234, 248, 335, 452
SsiI CCGC 2 cut(s) 263, 324
TaaI ACNGT 2 cut(s) 138, 310
TaiI ACGT 3 cut(s) 99, 185, 427
TasI AATT 6 cut(s) 188, 202, 234, 248, 335, 452
TfiI GAWTC 2 cut(s) 286, 402
Tru1I TTAA 3 cut(s) 186, 338, 447
Tru9I TTAA 3 cut(s) 186, 338, 447
TscAI CASTG 1 cut(s) 250
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 6 cut(s) 29, 168, 186, 278, 319, 465
TspRI CASTG 1 cut(s) 250
XapI RAATTY 2 cut(s) 188, 452
XmiI GTMKAC 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.