Rroxscaffold_4G00300570

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017563
Physical Location & Seq
Reverse (-)
20998759 .. 20999984
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00300570.1

Sequence Viewer

Length: 588 bp
ATGAAGCCATACATCAAAGGAGGAGGAACACTTGAAGTACTTCTTGTTGATGCTGAAGACATTAGACACACCAATGTTCTCGGTACACCGGCCTACTATGTTATCTTAGAGTGTGGCACTCAAGTGTACAGAAGCAAAAAATCGTCAGAAGAAGATGAAAAAGTTTGCTGGAATGAAAAATTCACATTTGAATTTTCTGATTGGAAAAATTTGACTCATCTCAAATTCAGAATTATGGACACTGAGATGTTCACAGATGATGGATTTGTTGGTGAAACCATGATTCATATTGGTGGAATTATTACTGAGGGAAAGGACAGAGGATTCATTGAAGTAAAACCAGCTCCATATAATGTTGTACTTGAAGATGACACCTATAAAGGAGAGATAAAGATTGGATTCAGATTTGTTGCAAATAAAGAAGCAGTAGTGAACACAAGGGAGTACTTAGCAGATCAGAACAACACTAAACCAAGAGGATCAATCTGCAGGACCATTGCGAACTTATGGAAAGGTTTATGGTGGAAGTTTTTGTTTTGTCAAAGAACGGATTCTAATAACAGTCGGAAACATATTAAGGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

195

Amino Acids

22.58

Weight (kDa)

6.45

Isoelectric Point (pI)

31.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 9 - 102 3.4e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00467 AT4G00467
fragaria_vesca FvH4_7g14250
malus_domestica MD01G1060400.v1.1 MD07G1137300.v1.1
prunus_persica Prupe.2G170300_v2.0.a1
pyrus_communis pycom07g13510
rosa_chinensis RchiOBHm_Chr1g0355241
rosa_laevigata RLG00000028169
rosa_roxburghii Rroxscaffold_4G00300570
rosa_rugosa Rorug01G0245700
rosa_wichuraiana Rw1G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 487
AcsI RAATTY 4 cut(s) 179, 191, 208, 224
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 5 cut(s) 39, 85, 128, 360, 446
AgsI TTSAA 4 cut(s) 35, 191, 332, 365
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
AlwI GGATC 1 cut(s) 487
AoxI GGCC 1 cut(s) 90
ApoI RAATTY 4 cut(s) 179, 191, 208, 224
Asp700I GAANNNNTTC 2 cut(s) 39, 550
AspS9I GGNCC 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 487
BmcAI AGTACT 2 cut(s) 39, 446
Bme18I GGWCC 1 cut(s) 492
BmgT120I GGNCC 1 cut(s) 492
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 495
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 234, 297
BseRI GAGGAG 1 cut(s) 36
BshFI GGCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 89
BsnI GGCC 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 2 cut(s) 454, 479
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 235, 298
BspMAI CTGCAG 1 cut(s) 491
BspPI GGATC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 2 cut(s) 454, 479
Bst4CI ACNGT 1 cut(s) 563
BstAUI TGTACA 1 cut(s) 126
BstDEI CTNAG 4 cut(s) 106, 243, 306, 448
BstKTI GATC 2 cut(s) 457, 482
BstMBI GATC 2 cut(s) 454, 479
BstSFI CTRYAG 1 cut(s) 487
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 492
Csp6I GTAC 5 cut(s) 38, 84, 127, 359, 445
CviAII CATG 1 cut(s) 280
CviJI RGCY 3 cut(s) 7, 92, 344
CviKI_1 RGCY 3 cut(s) 7, 92, 344
CviQI GTAC 5 cut(s) 38, 84, 127, 359, 445
DdeI CTNAG 4 cut(s) 106, 243, 306, 448
DpnI GATC 2 cut(s) 456, 481
DpnII GATC 2 cut(s) 454, 479
Eco47I GGWCC 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 75
FaeI CATG 1 cut(s) 283
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 89
Hin1II CATG 1 cut(s) 283
HinfI GANTC 5 cut(s) 214, 283, 324, 399, 551
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 4 cut(s) 86, 127, 252, 433
Hpy188I TCNGA 6 cut(s) 148, 199, 230, 404, 459, 567
Hpy8I GTNNAC 4 cut(s) 86, 127, 252, 433
HpyCH4III ACNGT 1 cut(s) 563
HpyCH4V TGCA 2 cut(s) 413, 489
HpyF3I CTNAG 4 cut(s) 106, 243, 306, 448
Hsp92II CATG 1 cut(s) 283
Kzo9I GATC 2 cut(s) 454, 479
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 4 cut(s) 102, 154, 354, 475
LweI GCATC 1 cut(s) 40
MalI GATC 2 cut(s) 456, 481
MboI GATC 2 cut(s) 454, 479
MboII GAAGA 4 cut(s) 68, 161, 164, 377
MluCI AATT 6 cut(s) 179, 191, 208, 224, 231, 297
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 5 cut(s) 14, 17, 301, 314, 470
MroXI GAANNNNTTC 2 cut(s) 39, 550
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 4 cut(s) 72, 122, 245, 291
MspI CCGG 1 cut(s) 89
NdeII GATC 2 cut(s) 454, 479
NlaIII CATG 1 cut(s) 283
OliI CACNNNNGTG 1 cut(s) 122
PdmI GAANNNNTTC 2 cut(s) 39, 550
PfeI GAWTC 4 cut(s) 283, 324, 399, 551
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 492
PstI CTGCAG 1 cut(s) 491
RsaI GTAC 5 cut(s) 39, 85, 128, 360, 446
RsaNI GTAC 5 cut(s) 38, 84, 127, 359, 445
RseI CAYNNNNRTG 4 cut(s) 72, 122, 245, 291
SaqAI TTAA 1 cut(s) 576
Sau3AI GATC 2 cut(s) 454, 479
Sau96I GGNCC 1 cut(s) 492
ScaI AGTACT 2 cut(s) 39, 446
SchI GAGTC 1 cut(s) 208
SetI ASST 3 cut(s) 346, 377, 517
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 487
SinI GGWCC 1 cut(s) 492
SmiMI CAYNNNNRTG 4 cut(s) 72, 122, 245, 291
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 6 cut(s) 179, 191, 208, 224, 231, 297
TaaI ACNGT 1 cut(s) 563
TasI AATT 6 cut(s) 179, 191, 208, 224, 231, 297
TatI WGTACW 4 cut(s) 37, 126, 358, 444
TfiI GAWTC 4 cut(s) 283, 324, 399, 551
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 5 cut(s) 17, 171, 189, 275, 316
TspGWI ACGGA 1 cut(s) 563
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 492
XapI RAATTY 4 cut(s) 179, 191, 208, 224
XmnI GAANNNNTTC 2 cut(s) 39, 550
ZrmI AGTACT 2 cut(s) 39, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.