FvH4_7g14250

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017563
Physical Location & Seq
Forward (+)
12604723 .. 12605922
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14250.t1

Sequence Viewer

Length: 573 bp
ATGAAGCCATACATGAAAGGAGGAGGAAGCCTTGAAGTACTTCTTGTTGATGCTGAAGACATTAGACACACTAATGTTCTCGGTAAACCGGCTTACTATGTAATCTTAGAGTGTGGCACTCAAGTGTACAGAACCAAAATATCATCAGAAGAAGATGACAAAGTAACCTGGAATGAAAAGTTCACATTTGAATTTTCTGATTGGAAACATTTGACTCATCTCAAATTCAGAATTATGGACACTGAGATGTTCACAGATGGTGGATTTGTTGGTGAAACAATGATTCATATTGGTGGAATTATTACTGAGGGAAAGGACAGAGGATTCATTGAAGTAAAGCCGTCTCCATATAATGTTGTGCTTGAAGATGACACATATAAAGGAGAGATAAAGATTGGATTCAAGTTTGTTGCAAATAAGGCAGCTGCAGGAAACACAAGGGAGTACTTGGCACAGAACAATAAACCAAAAGGGTCAATCAGCAAGACCATTGCGAACTTCTGGAAAGTTCTGTGGTGGAGGATTTTGTTTTGTCAAAGAACCGAATCTAACAACAATCAGAAACAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

191

Amino Acids

21.82

Weight (kDa)

7.73

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 9 - 102 1.4e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00467 AT4G00467
fragaria_vesca FvH4_7g14250
malus_domestica MD01G1060400.v1.1 MD07G1137300.v1.1
prunus_persica Prupe.2G170300_v2.0.a1
pyrus_communis pycom07g13510
rosa_chinensis RchiOBHm_Chr1g0355241
rosa_laevigata RLG00000028169
rosa_roxburghii Rroxscaffold_4G00300570
rosa_rugosa Rorug01G0245700
rosa_wichuraiana Rw1G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 191, 224
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 3 cut(s) 39, 128, 446
AgsI TTSAA 5 cut(s) 35, 191, 332, 365, 403
AjnI CCWGG 1 cut(s) 167
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 348
ApeKI GCWGC 2 cut(s) 422, 425
ApoI RAATTY 2 cut(s) 191, 224
Asp700I GAANNNNTTC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 412, 434
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 426
BisI GCNGC 2 cut(s) 423, 426
BlsI GCNGC 2 cut(s) 424, 427
BmcAI AGTACT 2 cut(s) 39, 446
Bme1390I CCNGG 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 2 cut(s) 234, 297
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 412, 434
BsiSI CCGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 348
BsmBI CGTCTC 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 235, 298
BspMAI CTGCAG 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 126
BstDEI CTNAG 3 cut(s) 106, 243, 306
BstMAI GTCTC 1 cut(s) 348
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 412, 434
BstV2I GAAGAC 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 88
Csp6I GTAC 3 cut(s) 38, 127, 445
CviAII CATG 1 cut(s) 13
CviJI RGCY 5 cut(s) 7, 30, 92, 340, 425
CviKI_1 RGCY 5 cut(s) 7, 30, 92, 340, 425
CviQI GTAC 3 cut(s) 38, 127, 445
DdeI CTNAG 3 cut(s) 106, 243, 306
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 348
FaeI CATG 1 cut(s) 16
FaiI YATR 9 cut(s) 10, 14, 99, 236, 288, 349, 351, 376, 378
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 423, 426
Fsp4HI GCNGC 2 cut(s) 423, 426
GluI GCNGC 2 cut(s) 423, 426
HapII CCGG 1 cut(s) 89
Hin1II CATG 1 cut(s) 16
HinfI GANTC 5 cut(s) 214, 283, 324, 399, 545
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 4 cut(s) 86, 127, 183, 252
Hpy188I TCNGA 4 cut(s) 148, 199, 230, 561
Hpy188III TCNNGA 1 cut(s) 502
Hpy8I GTNNAC 4 cut(s) 86, 127, 183, 252
HpyCH4V TGCA 2 cut(s) 413, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 3 cut(s) 106, 243, 306
Hsp92II CATG 1 cut(s) 16
LpnPI CCDG 5 cut(s) 102, 154, 181, 414, 487
Lsp1109I GCAGC 2 cut(s) 412, 434
LweI GCATC 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 4 cut(s) 68, 161, 164, 377
MluCI AATT 4 cut(s) 191, 224, 231, 297
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 5 cut(s) 14, 17, 301, 314, 513
MroXI GAANNNNTTC 1 cut(s) 39
MslI CAYNNNNRTG 4 cut(s) 72, 122, 245, 291
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 419
NlaIII CATG 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 4 cut(s) 283, 324, 399, 545
PkrI GCNGC 2 cut(s) 424, 427
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PstI CTGCAG 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 3 cut(s) 39, 128, 446
RsaNI GTAC 3 cut(s) 38, 127, 445
RseI CAYNNNNRTG 4 cut(s) 72, 122, 245, 291
SatI GCNGC 2 cut(s) 423, 426
ScaI AGTACT 2 cut(s) 39, 446
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 169
SetI ASST 2 cut(s) 170, 427
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 426
SmiMI CAYNNNNRTG 4 cut(s) 72, 122, 245, 291
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 4 cut(s) 191, 224, 231, 297
StyD4I CCNGG 1 cut(s) 167
TasI AATT 4 cut(s) 191, 224, 231, 297
TatI WGTACW 3 cut(s) 37, 126, 444
TfiI GAWTC 4 cut(s) 283, 324, 399, 545
TscAI CASTG 1 cut(s) 247
TseI GCWGC 2 cut(s) 422, 425
TspDTI ATGAA 5 cut(s) 17, 29, 189, 275, 316
TspRI CASTG 1 cut(s) 247
XapI RAATTY 2 cut(s) 191, 224
XmnI GAANNNNTTC 1 cut(s) 39
ZrmI AGTACT 2 cut(s) 39, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.