RLG00000028169

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017563
Physical Location & Seq
Reverse (-)
19695866 .. 19697093
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028169

Sequence Viewer

Length: 585 bp
ATGAAGCCATACATCAAAGGAGGAGGAACACTTGAAGTACTTCTTGTTGATGCTGAAGACATTAGACACACCAATGTTCTCGGTACACCGGCCTACTATGTTATCTTAGAGTGTGGCACTCAAGTGTACAGAAGCAAAAAATCATCAGAAGAAGATGAAAAAGTTTGCTGGAATGAAAAATTCACATTTGAATTTTCTGATTGGAAAAATTTGACTTATCTCAAATTCAGAATTATGGACACTGAGATGTTCACAGACGATGGATTTGTTGGTGAAACCATGATTCATATTGGTGGAATTATTACTGAGGGAAAGGACAGAGGATTCATTGAAGTAAAACCAGCTCCATATAATGTTGTACTTGAAGATGACACCTATAAAGGAGAGATAAAGATTGGATTCAGATTTGTTGCAAATAAAGAAGCAGTAGTGAACACAAGGGAGTACTTAGCAGAGAACAACACTAAACCAAGAGGATCAATCTGCAGGACCATTGCGAACTTATGGAAAGGTTTATGGTGGAAGTTTTTGCTTTGTCAAAGAACGGATTCTAATAACAGTCAGAAACATATTAAGGAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

195

Amino Acids

22.43

Weight (kDa)

6.0

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 9 - 102 7.1e-12 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00467 AT4G00467
fragaria_vesca FvH4_7g14250
malus_domestica MD01G1060400.v1.1 MD07G1137300.v1.1
prunus_persica Prupe.2G170300_v2.0.a1
pyrus_communis pycom07g13510
rosa_chinensis RchiOBHm_Chr1g0355241
rosa_laevigata RLG00000028169
rosa_roxburghii Rroxscaffold_4G00300570
rosa_rugosa Rorug01G0245700
rosa_wichuraiana Rw1G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 484
AcsI RAATTY 4 cut(s) 179, 191, 208, 224
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 5 cut(s) 39, 85, 128, 360, 446
AgsI TTSAA 4 cut(s) 35, 191, 332, 365
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
AlwI GGATC 1 cut(s) 484
AoxI GGCC 1 cut(s) 90
ApoI RAATTY 4 cut(s) 179, 191, 208, 224
ArsI GACNNNNNNTTYG 2 cut(s) 248, 280
Asp700I GAANNNNTTC 2 cut(s) 39, 547
AspS9I GGNCC 1 cut(s) 489
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 484
BmcAI AGTACT 2 cut(s) 39, 446
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 489
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 492
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 2 cut(s) 234, 297
BseRI GAGGAG 1 cut(s) 36
BshFI GGCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 89
BsnI GGCC 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 1 cut(s) 476
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 235, 298
BspMAI CTGCAG 1 cut(s) 488
BspPI GGATC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 88
BssMI GATC 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 560
BstAUI TGTACA 1 cut(s) 126
BstDEI CTNAG 4 cut(s) 106, 243, 306, 448
BstKTI GATC 1 cut(s) 479
BstMBI GATC 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 484
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 489
Csp6I GTAC 5 cut(s) 38, 84, 127, 359, 445
CviAII CATG 1 cut(s) 280
CviJI RGCY 3 cut(s) 7, 92, 344
CviKI_1 RGCY 3 cut(s) 7, 92, 344
CviQI GTAC 5 cut(s) 38, 84, 127, 359, 445
DdeI CTNAG 4 cut(s) 106, 243, 306, 448
DpnI GATC 1 cut(s) 478
DpnII GATC 1 cut(s) 476
Eco47I GGWCC 1 cut(s) 489
Eco57I CTGAAG 1 cut(s) 75
FaeI CATG 1 cut(s) 283
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 89
Hin1II CATG 1 cut(s) 283
HinfI GANTC 4 cut(s) 283, 324, 399, 548
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 4 cut(s) 86, 127, 252, 433
Hpy188I TCNGA 5 cut(s) 148, 199, 230, 404, 564
Hpy8I GTNNAC 4 cut(s) 86, 127, 252, 433
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4V TGCA 2 cut(s) 413, 486
HpyF3I CTNAG 4 cut(s) 106, 243, 306, 448
Hsp92II CATG 1 cut(s) 283
Kzo9I GATC 1 cut(s) 476
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 4 cut(s) 102, 154, 354, 472
LweI GCATC 1 cut(s) 40
MalI GATC 1 cut(s) 478
MboI GATC 1 cut(s) 476
MboII GAAGA 4 cut(s) 68, 161, 164, 377
MluCI AATT 6 cut(s) 179, 191, 208, 224, 231, 297
MnlI CCTC 5 cut(s) 14, 17, 301, 314, 467
MroXI GAANNNNTTC 2 cut(s) 39, 547
MseI TTAA 1 cut(s) 573
MslI CAYNNNNRTG 4 cut(s) 72, 122, 245, 291
MspI CCGG 1 cut(s) 89
NdeII GATC 1 cut(s) 476
NlaIII CATG 1 cut(s) 283
OliI CACNNNNGTG 1 cut(s) 122
PdmI GAANNNNTTC 2 cut(s) 39, 547
PfeI GAWTC 4 cut(s) 283, 324, 399, 548
PspPI GGNCC 1 cut(s) 489
PstI CTGCAG 1 cut(s) 488
RsaI GTAC 5 cut(s) 39, 85, 128, 360, 446
RsaNI GTAC 5 cut(s) 38, 84, 127, 359, 445
RseI CAYNNNNRTG 4 cut(s) 72, 122, 245, 291
SaqAI TTAA 1 cut(s) 573
Sau3AI GATC 1 cut(s) 476
Sau96I GGNCC 1 cut(s) 489
ScaI AGTACT 2 cut(s) 39, 446
SetI ASST 3 cut(s) 346, 377, 514
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 484
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 4 cut(s) 72, 122, 245, 291
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 6 cut(s) 179, 191, 208, 224, 231, 297
TaaI ACNGT 1 cut(s) 560
TasI AATT 6 cut(s) 179, 191, 208, 224, 231, 297
TatI WGTACW 4 cut(s) 37, 126, 358, 444
TfiI GAWTC 4 cut(s) 283, 324, 399, 548
Tru1I TTAA 1 cut(s) 573
Tru9I TTAA 1 cut(s) 573
TscAI CASTG 1 cut(s) 247
TspDTI ATGAA 5 cut(s) 17, 171, 189, 275, 316
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 4 cut(s) 179, 191, 208, 224
XmnI GAANNNNTTC 2 cut(s) 39, 547
ZrmI AGTACT 2 cut(s) 39, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.