MD01G1060400.v1.1

Elicitor-responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017563
Physical Location & Seq
Forward (+)
16398686 .. 16400364
1679 bp
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UTR
Exon/CDS
Intron
MD01G1060400.v1.1.491

Sequence Viewer

Length: 444 bp
ATGCCGCCATCCATGAAAGGAGGAACCCTTGAAGTACTTCTGGTTGATGCTGAAGACATTAGGCACACAAATCTTCTTGGTAGACCATCCTACTACGTGATCATAAAGTGTGGAAACCAAGAATACAGAAGCAAGCAATCATCAGATGAAGATGAAAGAGTTAGCTGGAATGAAAAATTCACGTTTGAATTCCCCTTATCAAATTGGAAAAAGTTGACTCATCTCAAACTCAGAATTATGGACACTGAATTATTCACAGATGGTGGATTTGTTGGTGAAACCATGATTCATCTTGGTGGGATAGTTACTGAGGGAAAGGACAGAGGATTTATTGAATTAAAACCAGCTCCATACAATGTGGTGCTTGAAGATGACACCTATAAAGGAGAGATAAAAATTGGATTTCGATTTACTGCAAATGTACGTATATACTTACATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

148

Amino Acids

16.91

Weight (kDa)

5.82

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 8 - 108 7e-11 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00467 AT4G00467
fragaria_vesca FvH4_7g14250
malus_domestica MD01G1060400.v1.1 MD07G1137300.v1.1
prunus_persica Prupe.2G170300_v2.0.a1
pyrus_communis pycom07g13510
rosa_chinensis RchiOBHm_Chr1g0355241
rosa_laevigata RLG00000028169
rosa_roxburghii Rroxscaffold_4G00300570
rosa_rugosa Rorug01G0245700
rosa_wichuraiana Rw1G022780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AciI CCGC 1 cut(s) 5
AcsI RAATTY 2 cut(s) 176, 188
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 2 cut(s) 36, 423
AgsI TTSAA 4 cut(s) 32, 188, 335, 368
AluBI AGCT 2 cut(s) 165, 347
AluI AGCT 2 cut(s) 165, 347
ApoI RAATTY 2 cut(s) 176, 188
Asp700I GAANNNNTTC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 60
BccI CCATC 3 cut(s) 16, 94, 254
BclI TGATCA 1 cut(s) 99
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 60
BsaAI YACGTR 2 cut(s) 97, 425
BseGI GGATG 2 cut(s) 8, 86
BseMII CTCAG 2 cut(s) 244, 300
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 243, 301
BspLI GGNNCC 1 cut(s) 25
BssMI GATC 1 cut(s) 99
BstBAI YACGTR 2 cut(s) 97, 425
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 230, 309
BstF5I GGATG 2 cut(s) 8, 86
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BstSNI TACGTA 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 60
BtsCI GGATG 2 cut(s) 8, 86
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 35, 422
CviAII CATG 2 cut(s) 13, 283
CviJI RGCY 2 cut(s) 165, 347
CviKI_1 RGCY 2 cut(s) 165, 347
CviQI GTAC 2 cut(s) 35, 422
DdeI CTNAG 2 cut(s) 230, 309
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco105I TACGTA 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 188
FaeI CATG 2 cut(s) 16, 286
FaiI YATR 8 cut(s) 14, 104, 239, 284, 352, 381, 428, 430
FatI CATG 2 cut(s) 12, 282
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
Hin1II CATG 2 cut(s) 16, 286
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 2 cut(s) 217, 286
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 83, 216
Hpy188I TCNGA 2 cut(s) 145, 233
Hpy8I GTNNAC 2 cut(s) 83, 216
HpyCH4IV ACGT 3 cut(s) 96, 182, 424
HpyCH4V TGCA 1 cut(s) 416
HpyF3I CTNAG 2 cut(s) 230, 309
HpySE526I ACGT 3 cut(s) 96, 182, 424
Hsp92II CATG 2 cut(s) 16, 286
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 3 cut(s) 26, 151, 357
LweI GCATC 1 cut(s) 37
MaeII ACGT 3 cut(s) 96, 182, 424
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 4 cut(s) 65, 65, 161, 380
MluCI AATT 7 cut(s) 176, 188, 202, 234, 248, 335, 396
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 3 cut(s) 14, 304, 317
MroXI GAANNNNTTC 1 cut(s) 36
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 294
NdeII GATC 1 cut(s) 99
NlaIII CATG 2 cut(s) 16, 286
NlaIV GGNNCC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 2 cut(s) 97, 425
PspN4I GGNNCC 1 cut(s) 25
RsaI GTAC 2 cut(s) 36, 423
RsaNI GTAC 2 cut(s) 35, 422
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 36
SchI GAGTC 1 cut(s) 211
SetI ASST 6 cut(s) 99, 167, 185, 349, 380, 427
SfaNI GCATC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 294
SnaBI TACGTA 1 cut(s) 425
Sse9I AATT 7 cut(s) 176, 188, 202, 234, 248, 335, 396
SsiI CCGC 1 cut(s) 5
TaiI ACGT 3 cut(s) 99, 185, 427
TaqI TCGA 1 cut(s) 406
TasI AATT 7 cut(s) 176, 188, 202, 234, 248, 335, 396
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 250
TspDTI ATGAA 5 cut(s) 29, 162, 168, 186, 278
TspRI CASTG 1 cut(s) 250
XapI RAATTY 2 cut(s) 176, 188
XmiI GTMKAC 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.