AT4G01710

Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015980
Physical Location & Seq
Forward (+)
735653 .. 736965
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01710.1

Sequence Viewer

Length: 399 bp
ATGGCAGAATTCGTTGAAGCTGATAACGCAGAAGCAATAATCGCGAGGATCGAAACCAAATCGAGGAAGATTGAAAGCCTACTCAAACAGTACAAACATGTAGAAGCTTTGAAAACGGCTCTTGAAGGTTCGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAGTTGTGCACAGAGCTTTAATGGCCATTAAGGATATTGACGGAATGCTCAATGCTCTTGATGTCGAATATTACGACATTCTCATGAAGTACTTGTACAGAGGACTTTCTACTGGGGACCGACCCACCTGCGATCAGTGCCTGAAGATTCACGAGAAACTCACTGAGAGAGCTGGTCTCGGTTGCATTCTCCGATGTCTTACTGATACCATCAACACCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005856 GO:0005885 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0007163 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0012505 GO:0014812 GO:0014909 GO:0015629 GO:0016043 GO:0016049 GO:0016477 GO:0021761 GO:0021769 GO:0022607 GO:0030011 GO:0030029 GO:0030030 GO:0030036 GO:0030041 GO:0030154 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0030900 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0034622 GO:0040007 GO:0040011 GO:0042995 GO:0043005 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051258 GO:0051493 GO:0051495 GO:0051639 GO:0051674 GO:0060322 GO:0061842 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0097458 GO:0097581 GO:0097708 GO:0110053 GO:0120025 GO:0120036 GO:0120038 GO:0150034 GO:1902903 GO:1902905
KEGG Pathways
Metabolic & Signaling
ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132
Pfam Domains
Protein Families
P16-Arc

Protein Analysis

132

Amino Acids

14.97

Weight (kDa)

6.82

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
P16-Arc PF04699 8 - 128 3.5e-24 ARP2/3 complex 16 kDa subunit (p16-Arc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01710 AT5G65274
fragaria_vesca FvH4_7g09830
malus_domestica MD02G1216700.v1.1 MD15G1416400.v1.1
prunus_persica Prupe.2G127400_v2.0.a1
pyrus_communis pycom02g17840
rosa_chinensis RchiOBHm_Chr1g0346991
rosa_laevigata RLG00000028765
rosa_multiflora Rmu_sc0002705.1_g000019
rosa_roxburghii Rroxscaffold_4G00307990
rosa_samantha Rh1AG202900 Rh1CG187600 Rh1DG199600
rosa_wichuraiana Rw1G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 311
AccII CGCG 2 cut(s) 44, 147
AclI AACGTT 1 cut(s) 154
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 3 cut(s) 92, 266, 272
AfiI CCNNNNNNNGG 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 4 cut(s) 17, 74, 112, 125
AluBI AGCT 4 cut(s) 20, 107, 191, 347
AluI AGCT 4 cut(s) 20, 107, 191, 347
Alw21I GWGCWC 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 356
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 316
AoxI GGCC 1 cut(s) 198
ApaLI GTGCAC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 292
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 254, 286
BauI CACGAG 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 186
BccI CCATC 1 cut(s) 392
BceAI ACGGC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 285, 319
BcoDI GTCTC 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 311
BmcAI AGTACT 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 293
BmrI ACTGGG 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 336, 368
BsaI GGTCTC 1 cut(s) 356
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 186
Bsh1236I CGCG 2 cut(s) 44, 147
BshFI GGCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 186
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 2 cut(s) 225, 360
BsnI GGCC 1 cut(s) 200
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 186
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 2 cut(s) 48, 307
Bsp68I TCGCGA 2 cut(s) 44, 147
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 2 cut(s) 44, 147
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 293
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 356
BsrGI TGTACA 1 cut(s) 270
BsrI ACTGG 1 cut(s) 292
BssMI GATC 2 cut(s) 48, 307
BssSI CACGAG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 326
Bst4CI ACNGT 2 cut(s) 90, 394
BstAUI TGTACA 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 339
BstFNI CGCG 2 cut(s) 44, 147
BstKTI GATC 2 cut(s) 51, 310
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 48, 307
BstMWI GCNNNNNNNGC 4 cut(s) 26, 41, 197, 312
BstNSI RCATGY 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 2 cut(s) 44, 147
BsuRI GGCC 1 cut(s) 200
BtgZI GCGATG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 317, 336
BtuMI TCGCGA 2 cut(s) 44, 147
BveI ACCTGC 1 cut(s) 311
CaiI CAGNNNCTG 1 cut(s) 316
CciI TCATGA 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 292
Csp6I GTAC 3 cut(s) 91, 265, 271
CviAII CATG 2 cut(s) 98, 259
CviJI RGCY 8 cut(s) 20, 78, 107, 119, 167, 191, 200, 347
CviKI_1 RGCY 8 cut(s) 20, 78, 107, 119, 167, 191, 200, 347
CviQI GTAC 3 cut(s) 91, 265, 271
DdeI CTNAG 1 cut(s) 339
DpnI GATC 2 cut(s) 50, 309
DpnII GATC 2 cut(s) 48, 307
EaeI YGGCCR 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 8
FaeI CATG 2 cut(s) 101, 262
FaiI YATR 2 cut(s) 99, 260
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 97, 258
HaeIII GGCC 1 cut(s) 200
Hin1II CATG 2 cut(s) 101, 262
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 138, 368
Hpy188III TCNNGA 6 cut(s) 43, 122, 146, 233, 259, 326
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 90, 394
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 159, 184, 360
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 41, 197, 312
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 2 cut(s) 101, 262
Kzo9I GATC 2 cut(s) 48, 307
LpnPI CCDG 4 cut(s) 273, 316, 329, 333
MaeII ACGT 1 cut(s) 154
MalI GATC 2 cut(s) 50, 309
MboI GATC 2 cut(s) 48, 307
MboII GAAGA 2 cut(s) 79, 331
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 2 cut(s) 8, 169
MluNI TGGCCA 1 cut(s) 200
MnlI CCTC 4 cut(s) 39, 57, 144, 269
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 2 cut(s) 194, 204
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 200
Mva1269I GAATGC 2 cut(s) 225, 360
MvnI CGCG 2 cut(s) 44, 147
MwoI GCNNNNNNNGC 4 cut(s) 26, 41, 197, 312
NdeII GATC 2 cut(s) 48, 307
NlaIII CATG 2 cut(s) 101, 262
NlaIV GGNNCC 1 cut(s) 293
NruI TCGCGA 2 cut(s) 44, 147
NspI RCATGY 1 cut(s) 101
PagI TCATGA 1 cut(s) 258
PaqCI CACCTGC 1 cut(s) 311
PciI ACATGT 1 cut(s) 97
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 151, 246
PctI GAATGC 2 cut(s) 225, 360
PfeI GAWTC 1 cut(s) 322
PscI ACATGT 1 cut(s) 97
Psp1406I AACGTT 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 292
PstNI CAGNNNCTG 1 cut(s) 316
RruI TCGCGA 2 cut(s) 44, 147
RsaI GTAC 3 cut(s) 92, 266, 272
RsaNI GTAC 3 cut(s) 91, 265, 271
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 2 cut(s) 194, 204
Sau3AI GATC 2 cut(s) 48, 307
Sau96I GGNCC 1 cut(s) 292
ScaI AGTACT 1 cut(s) 266
SduI GDGCHC 1 cut(s) 186
SetI ASST 7 cut(s) 22, 109, 130, 157, 193, 305, 349
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 2 cut(s) 8, 169
SspI AATATT 1 cut(s) 245
TaaI ACNGT 2 cut(s) 90, 394
TaiI ACGT 1 cut(s) 157
TaqI TCGA 3 cut(s) 51, 62, 240
TaqII GACCGA 1 cut(s) 309
TasI AATT 2 cut(s) 8, 169
TatI WGTACW 3 cut(s) 90, 264, 270
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 2 cut(s) 194, 204
Tru9I TTAA 2 cut(s) 194, 204
TscAI CASTG 2 cut(s) 317, 343
TspDTI ATGAA 2 cut(s) 165, 275
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 2 cut(s) 317, 343
VneI GTGCAC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.