Rh1DG199600

Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0015980
Physical Location & Seq
Reverse (-)
39170322 .. 39171995
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG199600.1

Sequence Viewer

Length: 402 bp
ATGGCAGACGAACATGTGGAAGCCGATAACGCAGAGGCAATAATCGCCCGAATCGAGCACAAATCTCGAAAGATCGAAAGCTTACTCAAACAGTACAGACCAGTCGAAGCTCTCAAAACCGCTCTCGAAGGCTCGCCTCCCAATACCAGAGACGAACGATGCAAGTCTGCGAATTGGATAATGGTGCATAGAGCTATTATGGCTATCAAAGATGTTGATGGAATGTTTTCTTCTTTGGATCCTGAGTACTATGATATTCTCATGAAGTACTTGTATAGAGGCTTGTCCACTGGAGACCGCCCCACATGCGACCAGTGCCTTCGGATTCATGAAAAACTGACAGAGAGAGCTGGTTTGGGATGCATACTACGTTCCCTTTCAGACACAGTGAATACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005856 GO:0005885 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0007163 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0012505 GO:0014812 GO:0014909 GO:0015629 GO:0016043 GO:0016049 GO:0016477 GO:0021761 GO:0021769 GO:0022607 GO:0030011 GO:0030029 GO:0030030 GO:0030036 GO:0030041 GO:0030154 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0030900 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0034622 GO:0040007 GO:0040011 GO:0042995 GO:0043005 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051258 GO:0051493 GO:0051495 GO:0051639 GO:0051674 GO:0060322 GO:0061842 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0097458 GO:0097581 GO:0097708 GO:0110053 GO:0120025 GO:0120036 GO:0120038 GO:0150034 GO:1902903 GO:1902905
KEGG Pathways
Metabolic & Signaling
ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132
Pfam Domains
Protein Families
P16-Arc

Protein Analysis

133

Amino Acids

15.11

Weight (kDa)

6.08

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
P16-Arc PF04699 6 - 129 4e-22 ARP2/3 complex 16 kDa subunit (p16-Arc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01710 AT5G65274
fragaria_vesca FvH4_7g09830
malus_domestica MD02G1216700.v1.1 MD15G1416400.v1.1
prunus_persica Prupe.2G127400_v2.0.a1
pyrus_communis pycom02g17840
rosa_chinensis RchiOBHm_Chr1g0346991
rosa_laevigata RLG00000028765
rosa_multiflora Rmu_sc0002705.1_g000019
rosa_roxburghii Rroxscaffold_4G00307990
rosa_samantha Rh1AG202900 Rh1CG187600 Rh1DG199600
rosa_wichuraiana Rw1G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 2 cut(s) 120, 298
AclWI GGATC 2 cut(s) 233, 246
AfaI GTAC 3 cut(s) 95, 248, 269
AflIII ACRYGT 1 cut(s) 13
AluBI AGCT 4 cut(s) 81, 110, 194, 350
AluI AGCT 4 cut(s) 81, 110, 194, 350
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 2 cut(s) 144, 288
AlwI GGATC 2 cut(s) 233, 246
Asp700I GAANNNNTTC 1 cut(s) 226
BamHI GGATCC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 60
BccI CCATC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BcoDI GTCTC 2 cut(s) 144, 288
BmcAI AGTACT 2 cut(s) 248, 269
BmiI GGNNCC 1 cut(s) 240
BmsI GCATC 2 cut(s) 149, 350
BpmI CTGGAG 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 288
Bse1I ACTGG 3 cut(s) 101, 295, 313
BseGI GGATG 1 cut(s) 365
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 3 cut(s) 101, 295, 313
BsiHKAI GWGCWC 1 cut(s) 60
BsmAI GTCTC 2 cut(s) 144, 288
BsmBI CGTCTC 1 cut(s) 144
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 72, 238
BspACI CCGC 2 cut(s) 120, 298
BspCNI CTCAG 1 cut(s) 235
BspHI TCATGA 2 cut(s) 261, 328
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 2 cut(s) 233, 246
BspTNI GGTCTC 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 122
BsrI ACTGG 3 cut(s) 101, 295, 313
BssMI GATC 2 cut(s) 72, 238
Bst4CI ACNGT 3 cut(s) 93, 388, 397
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 365
BstKTI GATC 2 cut(s) 75, 241
BstMAI GTCTC 2 cut(s) 144, 288
BstMBI GATC 2 cut(s) 72, 238
BstMWI GCNNNNNNNGC 5 cut(s) 29, 44, 200, 306, 315
BstNSI RCATGY 2 cut(s) 17, 309
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BtsCI GGATG 1 cut(s) 365
BtsIMutI CAGTG 3 cut(s) 288, 320, 393
Cac8I GCNNGC 1 cut(s) 134
CciI TCATGA 2 cut(s) 261, 328
Csp6I GTAC 3 cut(s) 94, 247, 268
CviAII CATG 4 cut(s) 14, 262, 306, 329
CviJI RGCY 8 cut(s) 23, 81, 110, 132, 194, 203, 282, 350
CviKI_1 RGCY 8 cut(s) 23, 81, 110, 132, 194, 203, 282, 350
CviQI GTAC 3 cut(s) 94, 247, 268
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 74, 240
DpnII GATC 2 cut(s) 72, 238
Eco31I GGTCTC 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 4 cut(s) 17, 265, 309, 332
FaiI YATR 9 cut(s) 15, 189, 200, 252, 263, 276, 307, 330, 365
FatI CATG 4 cut(s) 13, 261, 305, 328
FokI GGATG 1 cut(s) 372
GsuI CTGGAG 1 cut(s) 312
Hin1II CATG 4 cut(s) 17, 265, 309, 332
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 2 cut(s) 51, 325
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 324, 382
Hpy188III TCNNGA 5 cut(s) 66, 125, 242, 262, 329
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 2 cut(s) 122, 329
HpyCH4III ACNGT 3 cut(s) 93, 388, 397
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 3 cut(s) 162, 187, 363
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 44, 200, 306, 315
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 4 cut(s) 17, 265, 309, 332
Kzo9I GATC 2 cut(s) 72, 238
LpnPI CCDG 6 cut(s) 114, 160, 255, 276, 326, 336
LweI GCATC 2 cut(s) 149, 350
MaeII ACGT 1 cut(s) 370
MalI GATC 2 cut(s) 74, 240
MbiI CCGCTC 1 cut(s) 122
MboI GATC 2 cut(s) 72, 238
MboII GAAGA 1 cut(s) 222
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 172
MnlI CCTC 3 cut(s) 28, 147, 272
Mph1103I ATGCAT 1 cut(s) 365
MroXI GAANNNNTTC 1 cut(s) 226
MwoI GCNNNNNNNGC 5 cut(s) 29, 44, 200, 306, 315
NdeII GATC 2 cut(s) 72, 238
NlaIII CATG 4 cut(s) 17, 265, 309, 332
NlaIV GGNNCC 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 2 cut(s) 17, 309
PagI TCATGA 2 cut(s) 261, 328
PciI ACATGT 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 51, 325
PscI ACATGT 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 240
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 3 cut(s) 95, 248, 269
RsaNI GTAC 3 cut(s) 94, 247, 268
Sau3AI GATC 2 cut(s) 72, 238
ScaI AGTACT 2 cut(s) 248, 269
SduI GDGCHC 1 cut(s) 60
SetI ASST 5 cut(s) 83, 112, 196, 352, 373
SfaNI GCATC 2 cut(s) 149, 350
Sse9I AATT 1 cut(s) 172
SsiI CCGC 2 cut(s) 120, 298
TaaI ACNGT 3 cut(s) 93, 388, 397
TaiI ACGT 1 cut(s) 373
TaqI TCGA 5 cut(s) 54, 67, 75, 105, 126
TasI AATT 1 cut(s) 172
TatI WGTACW 3 cut(s) 93, 246, 267
TfiI GAWTC 2 cut(s) 51, 325
TscAI CASTG 3 cut(s) 295, 320, 393
TspDTI ATGAA 3 cut(s) 278, 317, 345
TspRI CASTG 3 cut(s) 295, 320, 393
XceI RCATGY 2 cut(s) 17, 309
XmnI GAANNNNTTC 1 cut(s) 226
ZrmI AGTACT 2 cut(s) 248, 269
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.