MD15G1416400.v1.1

Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015980
Physical Location & Seq
Forward (+)
51801304 .. 51805082
3779 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1416400.v1.1.491

Sequence Viewer

Length: 399 bp
ATGGCAGGAACAGAGGAATTTGCGGAAGCAGATAACGCAGAGGCCATATTCAACAGAATCGAACAAAAATCTCGAAAGATCGAGAGCTTACTCAAACAGTGTCACTCCAAATCCTTTCCCCTTAATACATTCAATTTTCTGTACAAGACAGTTGAAGCTCTAAAAACTGCTCTTGAAGGCTCGCCTCTCAACACCAAAGACGAGCGTTGCAAGTCTGCAAATTGGATAATGGTGCATAGAGCTATCATGGCTATTAAAGAGGTGGTTGCAATGTTTTCTTCTTTGGATCCCGAGTACTATGACATTCTCATGAAGGGCTCAGACGTCACAATGGAGAGGAAGGCTCGTGAAAGTAACAGTGAGTTCGAGGACGATGGTGATTCAACAGCAATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005856 GO:0005885 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0007163 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0012505 GO:0014812 GO:0014909 GO:0015629 GO:0016043 GO:0016049 GO:0016477 GO:0021761 GO:0021769 GO:0022607 GO:0030011 GO:0030029 GO:0030030 GO:0030036 GO:0030041 GO:0030154 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0030900 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0034622 GO:0040007 GO:0040011 GO:0042995 GO:0043005 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051258 GO:0051493 GO:0051495 GO:0051639 GO:0051674 GO:0060322 GO:0061842 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0097458 GO:0097581 GO:0097708 GO:0110053 GO:0120025 GO:0120036 GO:0120038 GO:0150034 GO:1902903 GO:1902905
KEGG Pathways
Metabolic & Signaling
ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132
Pfam Domains
Protein Families
P16-Arc

Protein Analysis

133

Amino Acids

14.97

Weight (kDa)

4.99

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01710 AT5G65274
fragaria_vesca FvH4_7g09830
malus_domestica MD02G1216700.v1.1 MD15G1416400.v1.1
prunus_persica Prupe.2G127400_v2.0.a1
pyrus_communis pycom02g17840
rosa_chinensis RchiOBHm_Chr1g0346991
rosa_laevigata RLG00000028765
rosa_multiflora Rmu_sc0002705.1_g000019
rosa_roxburghii Rroxscaffold_4G00307990
rosa_samantha Rh1AG202900 Rh1CG187600 Rh1DG199600
rosa_wichuraiana Rw1G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 327
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 281, 294
AcsI RAATTY 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 2 cut(s) 143, 296
AgsI TTSAA 5 cut(s) 52, 133, 155, 176, 384
AluBI AGCT 4 cut(s) 87, 158, 242, 396
AluI AGCT 4 cut(s) 87, 158, 242, 396
AlwI GGATC 2 cut(s) 281, 294
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 290
BamHI GGATCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 320
BauI CACGAG 1 cut(s) 345
BccI CCATC 1 cut(s) 368
BmcAI AGTACT 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 328, 360
BsaHI GRCGYC 1 cut(s) 324
Bse3DI GCAATG 2 cut(s) 276, 396
BseMI GCAATG 2 cut(s) 276, 396
BseMII CTCAG 1 cut(s) 333
BshFI GGCC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 290
BsnI GGCC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 320
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 2 cut(s) 78, 286
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 332
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 2 cut(s) 281, 294
BsrDI GCAATG 2 cut(s) 276, 396
BsrGI TGTACA 1 cut(s) 141
BssMI GATC 2 cut(s) 78, 286
BssNI GRCGYC 1 cut(s) 324
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst4CI ACNGT 3 cut(s) 99, 151, 359
BstACI GRCGYC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 319
BstKTI GATC 2 cut(s) 81, 289
BstMBI GATC 2 cut(s) 78, 286
BstMWI GCNNNNNNNGC 2 cut(s) 35, 248
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 104, 364
Cac8I GCNNGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 309
Csp6I GTAC 2 cut(s) 142, 295
CviAII CATG 2 cut(s) 247, 310
CviJI RGCY 9 cut(s) 44, 87, 158, 180, 242, 251, 318, 344, 396
CviKI_1 RGCY 9 cut(s) 44, 87, 158, 180, 242, 251, 318, 344, 396
CviQI GTAC 2 cut(s) 142, 295
DdeI CTNAG 1 cut(s) 319
DpnI GATC 2 cut(s) 80, 288
DpnII GATC 2 cut(s) 78, 286
Eco24I GRGCYC 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 320
FaeI CATG 2 cut(s) 250, 313
FaiI YATR 5 cut(s) 47, 237, 248, 300, 311
FatI CATG 2 cut(s) 246, 309
FriOI GRGCYC 1 cut(s) 320
HaeIII GGCC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 2 cut(s) 250, 313
HinfI GANTC 2 cut(s) 57, 380
HphI GGTGA 1 cut(s) 389
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 6 cut(s) 72, 82, 173, 290, 310, 347
HpyAV CCTTC 3 cut(s) 170, 307, 334
HpyCH4III ACNGT 3 cut(s) 99, 151, 359
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 4 cut(s) 210, 218, 235, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 248
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 1 cut(s) 324
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 2 cut(s) 250, 313
Kzo9I GATC 2 cut(s) 78, 286
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 3 cut(s) 101, 325, 353
MalI GATC 2 cut(s) 80, 288
MboI GATC 2 cut(s) 78, 286
MboII GAAGA 1 cut(s) 270
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 3 cut(s) 17, 133, 220
MnlI CCTC 6 cut(s) 7, 34, 195, 253, 330, 361
MseI TTAA 2 cut(s) 123, 255
MslI CAYNNNNRTG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 35, 248
NdeII GATC 2 cut(s) 78, 286
NlaIII CATG 2 cut(s) 250, 313
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 101, 325
PagI TCATGA 1 cut(s) 309
PfeI GAWTC 2 cut(s) 57, 380
PspN4I GGNNCC 1 cut(s) 288
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 143, 296
RsaNI GTAC 2 cut(s) 142, 295
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 2 cut(s) 123, 255
Sau3AI GATC 2 cut(s) 78, 286
ScaI AGTACT 1 cut(s) 296
SduI GDGCHC 1 cut(s) 320
SetI ASST 6 cut(s) 89, 160, 244, 264, 327, 398
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 3 cut(s) 17, 133, 220
SsiI CCGC 1 cut(s) 23
TaaI ACNGT 3 cut(s) 99, 151, 359
TaiI ACGT 1 cut(s) 327
TaqI TCGA 4 cut(s) 60, 73, 81, 366
TasI AATT 3 cut(s) 17, 133, 220
TatI WGTACW 2 cut(s) 141, 294
TfiI GAWTC 2 cut(s) 57, 380
Tru1I TTAA 2 cut(s) 123, 255
Tru9I TTAA 2 cut(s) 123, 255
TscAI CASTG 2 cut(s) 104, 364
TseFI GTSAC 2 cut(s) 101, 325
Tsp45I GTSAC 2 cut(s) 101, 325
TspDTI ATGAA 1 cut(s) 326
TspRI CASTG 2 cut(s) 104, 364
XapI RAATTY 1 cut(s) 17
ZraI GACGTC 1 cut(s) 325
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.