FvH4_7g09830

Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015980
Physical Location & Seq
Reverse (-)
9380980 .. 9382940
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09830.t1

Sequence Viewer

Length: 402 bp
ATGGCAGACGAACATGTAGAAGCCGATAACGCAGAGGCCATAATCGCCCGAATCGAGCACAAATCTCGAAAGATCGAAAGCTTACTCAAACAGTACAGACCCGTCGAAGCTCTCAAAACCGCCCTTGAAGGCTCGCCTCCCAACACCAGAGACGAACGATGCAAGTCTGCGAATTGGATAATGGTGCATAGAGCTATTATGGCCATAAAAGATGTGGATGGGATGTTTTCTTCTTTGGATCCTGAGTACTATGACATTCTCATGAAGTACTTATATAGAGGCTTGTCAACTGGAGATCGTCCCACGTGCGACCAGTGCCTTCGAATTCATGAAAAATTAACAGAGAGAGCAGGTTTGGGATGCATACTACGTTCCCTTTCAGACACTGTGAATACAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005856 GO:0005885 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0007163 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0012505 GO:0014812 GO:0014909 GO:0015629 GO:0016043 GO:0016049 GO:0016477 GO:0021761 GO:0021769 GO:0022607 GO:0030011 GO:0030029 GO:0030030 GO:0030036 GO:0030041 GO:0030154 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0030900 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0034622 GO:0040007 GO:0040011 GO:0042995 GO:0043005 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051258 GO:0051493 GO:0051495 GO:0051639 GO:0051674 GO:0060322 GO:0061842 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0097458 GO:0097581 GO:0097708 GO:0110053 GO:0120025 GO:0120036 GO:0120038 GO:0150034 GO:1902903 GO:1902905
KEGG Pathways
Metabolic & Signaling
ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132
Pfam Domains
Protein Families
P16-Arc

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

6.08

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
P16-Arc PF04699 6 - 129 4e-22 ARP2/3 complex 16 kDa subunit (p16-Arc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01710 AT5G65274
fragaria_vesca FvH4_7g09830
malus_domestica MD02G1216700.v1.1 MD15G1416400.v1.1
prunus_persica Prupe.2G127400_v2.0.a1
pyrus_communis pycom02g17840
rosa_chinensis RchiOBHm_Chr1g0346991
rosa_laevigata RLG00000028765
rosa_multiflora Rmu_sc0002705.1_g000019
rosa_roxburghii Rroxscaffold_4G00307990
rosa_samantha Rh1AG202900 Rh1CG187600 Rh1DG199600
rosa_wichuraiana Rw1G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 341
AciI CCGC 1 cut(s) 120
AclWI GGATC 2 cut(s) 233, 246
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 324
AcvI CACGTG 1 cut(s) 306
AfaI GTAC 3 cut(s) 95, 248, 269
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 3 cut(s) 81, 110, 194
AluI AGCT 3 cut(s) 81, 110, 194
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 2 cut(s) 233, 246
AlwNI CAGNNNCTG 1 cut(s) 386
AoxI GGCC 2 cut(s) 36, 201
ApoI RAATTY 1 cut(s) 324
AsuII TTCGAA 1 cut(s) 322
BalI TGGCCA 1 cut(s) 203
BamHI GGATCC 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 60
BccI CCATC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BcoDI GTCTC 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 341
BmcAI AGTACT 2 cut(s) 248, 269
BmiI GGNNCC 1 cut(s) 240
BmsI GCATC 2 cut(s) 149, 350
BpmI CTGGAG 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 306
Bse1I ACTGG 2 cut(s) 295, 313
BseGI GGATG 3 cut(s) 223, 228, 365
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 295, 313
BshFI GGCC 2 cut(s) 38, 203
BsiHKAI GWGCWC 1 cut(s) 60
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 2 cut(s) 38, 203
Bsp119I TTCGAA 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 3 cut(s) 72, 238, 295
BspACI CCGC 1 cut(s) 120
BspANI GGCC 2 cut(s) 38, 203
BspCNI CTCAG 1 cut(s) 235
BspHI TCATGA 2 cut(s) 261, 328
BspLI GGNNCC 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 2 cut(s) 233, 246
BspT104I TTCGAA 1 cut(s) 322
BsrI ACTGG 2 cut(s) 295, 313
BssMI GATC 3 cut(s) 72, 238, 295
Bst4CI ACNGT 3 cut(s) 93, 388, 397
BstBAI YACGTR 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 322
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 3 cut(s) 223, 228, 365
BstKTI GATC 3 cut(s) 75, 241, 298
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 3 cut(s) 72, 238, 295
BstMWI GCNNNNNNNGC 4 cut(s) 29, 44, 200, 315
BstNSI RCATGY 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 38, 203
BtsCI GGATG 3 cut(s) 223, 228, 365
BtsIMutI CAGTG 2 cut(s) 320, 384
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 1 cut(s) 134
CaiI CAGNNNCTG 1 cut(s) 386
CciI TCATGA 2 cut(s) 261, 328
Csp6I GTAC 3 cut(s) 94, 247, 268
CviAII CATG 3 cut(s) 14, 262, 329
CviJI RGCY 8 cut(s) 23, 38, 81, 110, 132, 194, 203, 282
CviKI_1 RGCY 8 cut(s) 23, 38, 81, 110, 132, 194, 203, 282
CviQI GTAC 3 cut(s) 94, 247, 268
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 74, 240, 297
DpnII GATC 3 cut(s) 72, 238, 295
EaeI YGGCCR 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 3 cut(s) 17, 265, 332
FaqI GGGAC 1 cut(s) 285
FatI CATG 3 cut(s) 13, 261, 328
FokI GGATG 3 cut(s) 230, 235, 372
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 2 cut(s) 38, 203
Hin1II CATG 3 cut(s) 17, 265, 332
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 4 cut(s) 66, 242, 262, 329
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 122, 329
HpyCH4III ACNGT 3 cut(s) 93, 388, 397
HpyCH4IV ACGT 2 cut(s) 305, 370
HpyCH4V TGCA 3 cut(s) 162, 187, 363
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 44, 200, 315
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 2 cut(s) 305, 370
Hsp92II CATG 3 cut(s) 17, 265, 332
Kzo9I GATC 3 cut(s) 72, 238, 295
LpnPI CCDG 5 cut(s) 160, 255, 276, 326, 336
LweI GCATC 2 cut(s) 149, 350
MaeII ACGT 2 cut(s) 305, 370
MalI GATC 3 cut(s) 74, 240, 297
MboI GATC 3 cut(s) 72, 238, 295
MboII GAAGA 1 cut(s) 222
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 60
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 3 cut(s) 172, 324, 335
MluNI TGGCCA 1 cut(s) 203
MnlI CCTC 3 cut(s) 28, 147, 272
Mox20I TGGCCA 1 cut(s) 203
Mph1103I ATGCAT 1 cut(s) 365
MscI TGGCCA 1 cut(s) 203
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 203
MwoI GCNNNNNNNGC 4 cut(s) 29, 44, 200, 315
NdeII GATC 3 cut(s) 72, 238, 295
NlaIII CATG 3 cut(s) 17, 265, 332
NlaIV GGNNCC 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 1 cut(s) 17
NspV TTCGAA 1 cut(s) 322
PagI TCATGA 2 cut(s) 261, 328
PciI ACATGT 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 51
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
Ppu21I YACGTR 1 cut(s) 306
PscI ACATGT 1 cut(s) 13
PspCI CACGTG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 3 cut(s) 95, 248, 269
RsaNI GTAC 3 cut(s) 94, 247, 268
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 338
Sau3AI GATC 3 cut(s) 72, 238, 295
ScaI AGTACT 2 cut(s) 248, 269
SduI GDGCHC 1 cut(s) 60
SetI ASST 6 cut(s) 83, 112, 196, 308, 355, 373
SfaNI GCATC 2 cut(s) 149, 350
SfuI TTCGAA 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 3 cut(s) 172, 324, 335
SsiI CCGC 1 cut(s) 120
TaaI ACNGT 3 cut(s) 93, 388, 397
TaiI ACGT 2 cut(s) 308, 373
TaqI TCGA 5 cut(s) 54, 67, 75, 105, 322
TasI AATT 3 cut(s) 172, 324, 335
TatI WGTACW 3 cut(s) 93, 246, 267
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 2 cut(s) 320, 391
TspDTI ATGAA 3 cut(s) 278, 317, 345
TspRI CASTG 2 cut(s) 320, 391
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
ZrmI AGTACT 2 cut(s) 248, 269
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.