MD02G1216700.v1.1

Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015980
Physical Location & Seq
Forward (+)
24768376 .. 24770592
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1216700.v1.1.491

Sequence Viewer

Length: 408 bp
ATGGCAGGAACGGAGGAATTTGTGGAAGCAGATAATGCAGAGGCCATAATCAACAGAATCGAACAAAAGTCTCGAAAGATCGAGAGCTTACTCAAACAGTACAAGACAGTGGAAGCTCTAAAAACTGCTCTTGAAGGATCGCCTCTCAACACCAAAGACGAGCGCTGCAAGTCTGCAAATTGGATAATGGTGCATAGAGCTATCATGGCTATAAAAGATGTGGATGCAATGTTTTCTTCTTTGGATCCCGAGTACTACGACATTCTCATGAAGTACTTGTATAGAGGATTGTCTACGGGAGACCGGCCTACATGCGACCAGTGCCTTCGGATTCATGAAAAACTAACAGAGAAAGCTGGTTTGGGATGCATATTGCGGTGCCTTGCAGACACTGTGAATACGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005856 GO:0005885 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0007163 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009653 GO:0009825 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010638 GO:0012505 GO:0014812 GO:0014909 GO:0015629 GO:0016043 GO:0016049 GO:0016477 GO:0021761 GO:0021769 GO:0022607 GO:0030011 GO:0030029 GO:0030030 GO:0030036 GO:0030041 GO:0030154 GO:0030424 GO:0030426 GO:0030427 GO:0030832 GO:0030833 GO:0030838 GO:0030900 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032501 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0033267 GO:0034314 GO:0034622 GO:0040007 GO:0040011 GO:0042995 GO:0043005 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0045010 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051179 GO:0051258 GO:0051493 GO:0051495 GO:0051639 GO:0051674 GO:0060322 GO:0061842 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090558 GO:0090626 GO:0097435 GO:0097458 GO:0097581 GO:0097708 GO:0110053 GO:0120025 GO:0120036 GO:0120038 GO:0150034 GO:1902903 GO:1902905
KEGG Pathways
Metabolic & Signaling
ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132
Pfam Domains
Protein Families
P16-Arc

Protein Analysis

136

Amino Acids

15.28

Weight (kDa)

5.74

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
P16-Arc PF04699 6 - 131 1.3e-24 ARP2/3 complex 16 kDa subunit (p16-Arc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01710 AT5G65274
fragaria_vesca FvH4_7g09830
malus_domestica MD02G1216700.v1.1 MD15G1416400.v1.1
prunus_persica Prupe.2G127400_v2.0.a1
pyrus_communis pycom02g17840
rosa_chinensis RchiOBHm_Chr1g0346991
rosa_laevigata RLG00000028765
rosa_multiflora Rmu_sc0002705.1_g000019
rosa_roxburghii Rroxscaffold_4G00307990
rosa_samantha Rh1AG202900 Rh1CG187600 Rh1DG199600
rosa_wichuraiana Rw1G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 378
AccI GTMKAC 1 cut(s) 293
AciI CCGC 1 cut(s) 376
AclWI GGATC 3 cut(s) 145, 239, 252
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 3 cut(s) 101, 254, 275
AfeI AGCGCT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 134
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 4 cut(s) 87, 116, 200, 356
AluI AGCT 4 cut(s) 87, 116, 200, 356
Alw26I GTCTC 2 cut(s) 75, 294
AlwI GGATC 3 cut(s) 145, 239, 252
AlwNI CAGNNNCTG 1 cut(s) 392
Ama87I CYCGRG 1 cut(s) 248
Aor51HI AGCGCT 1 cut(s) 164
AoxI GGCC 2 cut(s) 42, 305
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 165
AvaI CYCGRG 1 cut(s) 248
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 75, 294
BfoI RGCGCY 1 cut(s) 166
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
BmcAI AGTACT 2 cut(s) 254, 275
BmeT110I CYCGRG 1 cut(s) 248
BmiI GGNNCC 2 cut(s) 246, 380
BmsI GCATC 2 cut(s) 214, 356
BsaI GGTCTC 1 cut(s) 294
Bse118I RCCGGY 1 cut(s) 303
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 1 cut(s) 234
BseGI GGATG 2 cut(s) 229, 371
BseMI GCAATG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 152
BshFI GGCC 2 cut(s) 44, 307
BshNI GGYRCC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 1 cut(s) 304
BsmAI GTCTC 2 cut(s) 75, 294
BsnI GGCC 2 cut(s) 44, 307
Bso31I GGTCTC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 248
Bsp143I GATC 3 cut(s) 78, 137, 244
BspACI CCGC 1 cut(s) 376
BspANI GGCC 2 cut(s) 44, 307
BspHI TCATGA 2 cut(s) 267, 334
BspLI GGNNCC 2 cut(s) 246, 380
BspPI GGATC 3 cut(s) 145, 239, 252
BspT107I GGYRCC 1 cut(s) 378
BspTNI GGTCTC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 303
BsrI ACTGG 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 303
BssMI GATC 3 cut(s) 78, 137, 244
Bst4CI ACNGT 4 cut(s) 99, 109, 394, 403
BstAPI GCANNNNNTGC 1 cut(s) 35
BstF5I GGATG 2 cut(s) 229, 371
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 3 cut(s) 81, 140, 247
BstMAI GTCTC 2 cut(s) 75, 294
BstMBI GATC 3 cut(s) 78, 137, 244
BstMWI GCNNNNNNNGC 3 cut(s) 35, 206, 321
BstNSI RCATGY 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 2 cut(s) 44, 307
BtsCI GGATG 2 cut(s) 229, 371
BtsIMutI CAGTG 3 cut(s) 114, 326, 390
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 2 cut(s) 267, 334
CfoI GCGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 303
Csp6I GTAC 3 cut(s) 100, 253, 274
CviAII CATG 4 cut(s) 205, 268, 312, 335
CviJI RGCY 7 cut(s) 44, 87, 116, 200, 209, 307, 356
CviKI_1 RGCY 7 cut(s) 44, 87, 116, 200, 209, 307, 356
CviQI GTAC 3 cut(s) 100, 253, 274
DpnI GATC 3 cut(s) 80, 139, 246
DpnII GATC 3 cut(s) 78, 137, 244
Eco31I GGTCTC 1 cut(s) 294
Eco47III AGCGCT 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 248
EcoT22I ATGCAT 1 cut(s) 371
FaeI CATG 4 cut(s) 208, 271, 315, 338
FaiI YATR 9 cut(s) 47, 195, 206, 212, 269, 282, 313, 336, 371
FatI CATG 4 cut(s) 204, 267, 311, 334
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 2 cut(s) 236, 378
Fsp4HI GCNGC 1 cut(s) 166
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 2 cut(s) 44, 307
HapII CCGG 1 cut(s) 304
HhaI GCGC 1 cut(s) 165
Hin1II CATG 4 cut(s) 208, 271, 315, 338
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 2 cut(s) 57, 331
HpaII CCGG 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 6 cut(s) 72, 82, 131, 248, 268, 335
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 2 cut(s) 128, 335
HpyCH4III ACNGT 4 cut(s) 99, 109, 394, 403
HpyCH4V TGCA 7 cut(s) 38, 168, 176, 193, 227, 369, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 206, 321
Hsp92II CATG 4 cut(s) 208, 271, 315, 338
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 78, 137, 244
LpnPI CCDG 3 cut(s) 317, 332, 342
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 2 cut(s) 214, 356
MalI GATC 3 cut(s) 80, 139, 246
MboI GATC 3 cut(s) 78, 137, 244
MboII GAAGA 1 cut(s) 228
MflI RGATCY 1 cut(s) 244
MluCI AATT 2 cut(s) 17, 178
MnlI CCTC 4 cut(s) 7, 34, 153, 278
Mph1103I ATGCAT 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 1 cut(s) 304
MwoI GCNNNNNNNGC 3 cut(s) 35, 206, 321
NdeII GATC 3 cut(s) 78, 137, 244
NlaIII CATG 4 cut(s) 208, 271, 315, 338
NlaIV GGNNCC 2 cut(s) 246, 380
NsiI ATGCAT 1 cut(s) 371
NspI RCATGY 1 cut(s) 315
PagI TCATGA 2 cut(s) 267, 334
PfeI GAWTC 2 cut(s) 57, 331
PkrI GCNGC 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 246, 380
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 244
RsaI GTAC 3 cut(s) 101, 254, 275
RsaNI GTAC 3 cut(s) 100, 253, 274
RseI CAYNNNNRTG 1 cut(s) 266
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 3 cut(s) 78, 137, 244
ScaI AGTACT 2 cut(s) 254, 275
SetI ASST 4 cut(s) 89, 118, 202, 358
SfaNI GCATC 2 cut(s) 214, 356
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 2 cut(s) 17, 178
SsiI CCGC 1 cut(s) 376
TaaI ACNGT 4 cut(s) 99, 109, 394, 403
TaqI TCGA 3 cut(s) 60, 73, 81
TasI AATT 2 cut(s) 17, 178
TatI WGTACW 3 cut(s) 99, 252, 273
TfiI GAWTC 2 cut(s) 57, 331
TscAI CASTG 3 cut(s) 114, 326, 397
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 3 cut(s) 284, 323, 351
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 3 cut(s) 114, 326, 397
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 293
ZrmI AGTACT 2 cut(s) 254, 275
Zsp2I ATGCAT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.