AT4G01780

XH XS domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
767310 .. 769246
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01780.1

Sequence Viewer

Length: 1419 bp
ATGGGAGGCACTAGGCATTGTTATGGATTAGGTTACGAAATGTTCAATTTCGTTTGGTCTAGTTCGGTTCGTTTCGTTTGGTCTAGTTCGGAAACCCTATTCAAGATTGTGATCATCACGAGAAGCTTGTGCATCCTTGGAAAGGTACACACACTTTTAACTTTTAAGGTTCTTACTTTTCTTCTTAAGATTGAATTGCAATGTGTGTTTAGTGATTGTGTATACGTGGCTGAAACAGGCATTGTTGTTAATATTCCAACTACAAAGGCACAAGATGGTCGACCCGCGGGTGAGAGTGGATCGAAGCTAAGGGATGAGTATATTCTCAGAGGATTAAACAATGGTCTTTTGTTTGACAAGGCTTATAGAGTAGATGGTCATGGAAAGAAGGACTGGATGAAAAAAGACGGTCCCAAGTTAGGTCTTTACGGGTGGATAGCTGGTGCTGATGATTATAACGACCGTGAACTCAAAACTATAGCTGAGCTTACGAAAGAAGAGGCGAGGAAACAGCAAATGCTTGTGAAGAATCTGAGACAAGTTGTAGAAGAGAAGATAAAAGACGTGAAGGAGATTGAGGAGCTTTTTGATGACCATGAGAGATTGACGAAGCTGTTGGAGTCAGAGAAGAAGAAACTCGAAATCAAAGGTAATGAGTTGGCAAAGCCCCAAGTGCACAATGGAACCGAGAGAATGAAATTGTCTGAAGATCTTGAACAGAGGCAAAAGGAGGAGCTTCATGAGAAAATCATAAGACTAGAAAGACAGATAGATCAGGTACAAGCGATTGAGCTAGAGGTTGAGCAGTTGAAAGGACAGCTCAATGTGATGAAGCACATGGCATCAGATGGCGATGCTCAAGTTGTGAAAGAGGTGGACATCATCTTCAAAGACTTAGTTGAGAAGGAAGCAGAACTCGCAGACCTCAATAAATTTAACCAAACTCTTATCCTTAGAGAGCGCAGGACCAATGATGAGCTTCAAGAAGCTCGTAAAGAATTGGTAAATTGTATGGGAGAGCTCGTAAGGAAACCATTCGTGGATGCAATGCAGCAGAAGTATTGTCAGGAAGATGTGGAGGACCGAGCAGTTGAAGTTCTCCAACTTTGGGAACACTATATCAACGATCCAGATTGGCATCCATACAAGCGGGTCAAGCTCGAAAATCAAGATAGAGAAGTGGAAGTGATAGATGATAGAGACGAAAAGCTGAGGGAGCTAAAGGCAGATTTGGGAGATGGTCCTTACAATGCGGTCACGAAAGCTTTGTTGGAGATAAACGAGTATAACCCGAGTGGAAGGTACATTACAACAGAGCTATGGAACTTCAAAGAAGATAAGAGGGCTACACTTGAAGAAGGTGTCACTTGTTTACTTGATCAATGGGAAAAAGCGAAACGTAAGCGCGGAATGGCGTAA

Protein Analysis

472

Amino Acids

54.95

Weight (kDa)

5.46

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XS PF03468 110 - 153 3.6e-08 XS domain
XH PF03469 337 - 468 1.6e-50 XH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccI GTMKAC 2 cut(s) 222, 280
AccII CGCG 2 cut(s) 287, 1407
AciI CCGC 5 cut(s) 285, 287, 1150, 1253, 1407
AclWI GGATC 2 cut(s) 307, 1121
AcsI RAATTY 1 cut(s) 932
AcuI CTGAAG 1 cut(s) 726
AfaI GTAC 3 cut(s) 147, 780, 1304
AfiI CCNNNNNNNGG 3 cut(s) 142, 419, 1108
AflII CTTAAG 1 cut(s) 185
AjiI CACGTC 1 cut(s) 565
AjuI GAANNNNNNNTTGG 2 cut(s) 1253, 1285
Alw21I GWGCWC 2 cut(s) 678, 1023
Alw26I GTCTC 2 cut(s) 529, 1194
Alw44I GTGCAC 1 cut(s) 674
AlwI GGATC 2 cut(s) 307, 1121
Ama87I CYCGRG 1 cut(s) 1291
ApaLI GTGCAC 1 cut(s) 674
ApeKI GCWGC 1 cut(s) 1051
ApoI RAATTY 1 cut(s) 932
Asp700I GAANNNNTTC 1 cut(s) 1034
AspLEI GCGC 2 cut(s) 963, 1407
AspS9I GGNCC 4 cut(s) 410, 966, 1081, 1241
AsuHPI GGTGA 1 cut(s) 302
AvaI CYCGRG 1 cut(s) 1291
AvaII GGWCC 4 cut(s) 410, 966, 1081, 1241
BaeGI GKGCMC 1 cut(s) 678
BanII GRGCYC 1 cut(s) 1023
BarI GAAGNNNNNNTAC 2 cut(s) 1291, 1323
BauI CACGAG 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 678, 1023
BbvCI CCTCAGC 1 cut(s) 1211
BbvI GCAGC 1 cut(s) 1063
BccI CCATC 4 cut(s) 269, 368, 842, 1232
BclI TGATCA 2 cut(s) 111, 1378
BcoDI GTCTC 2 cut(s) 529, 1194
BfaI CTAG 5 cut(s) 12, 60, 84, 758, 794
BfmI CTRYAG 1 cut(s) 477
BfrI CTTAAG 1 cut(s) 185
BglII AGATCT 1 cut(s) 709
BisI GCNGC 1 cut(s) 1052
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 1053
Bme18I GGWCC 4 cut(s) 410, 966, 1081, 1241
BmeT110I CYCGRG 1 cut(s) 1291
BmgBI CACGTC 1 cut(s) 565
BmgT120I GGNCC 4 cut(s) 410, 966, 1081, 1241
BmiI GGNNCC 2 cut(s) 412, 685
BmsI GCATC 5 cut(s) 141, 844, 851, 1033, 1147
Bpu10I CCTNAGC 2 cut(s) 308, 1211
Bpu1102I GCTNAGC 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 843
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 2 cut(s) 110, 1137
BsaJI CCNNGG 2 cut(s) 136, 285
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 419, 1108
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 2 cut(s) 206, 1053
Bse8I GATNNNNATC 2 cut(s) 110, 1137
BseDI CCNNGG 2 cut(s) 136, 285
BseGI GGATG 5 cut(s) 132, 319, 402, 1048, 1138
BseJI GATNNNNATC 2 cut(s) 110, 1137
BseLI CCNNNNNNNGG 3 cut(s) 142, 419, 1108
BseMI GCAATG 2 cut(s) 206, 1053
BseMII CTCAG 4 cut(s) 340, 474, 524, 1202
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 2 cut(s) 593, 746
BseSI GKGCMC 1 cut(s) 678
BseXI GCAGC 1 cut(s) 1063
Bsh1236I CGCG 2 cut(s) 287, 1407
Bsh1285I CGRYCG 1 cut(s) 463
BsiEI CGRYCG 1 cut(s) 463
BsiHKAI GWGCWC 2 cut(s) 678, 1023
BsiHKCI CYCGRG 1 cut(s) 1291
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 3 cut(s) 142, 419, 1108
BsmAI GTCTC 2 cut(s) 529, 1194
BsmBI CGTCTC 1 cut(s) 1194
BsmFI GGGAC 1 cut(s) 396
BsoBI CYCGRG 1 cut(s) 1291
Bsp1286I GDGCHC 2 cut(s) 678, 1023
Bsp143I GATC 6 cut(s) 111, 299, 709, 772, 1126, 1378
Bsp1720I GCTNAGC 1 cut(s) 483
BspACI CCGC 5 cut(s) 285, 287, 1150, 1253, 1407
BspCNI CTCAG 4 cut(s) 339, 475, 525, 1203
BspFNI CGCG 2 cut(s) 287, 1407
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 2 cut(s) 412, 685
BspPI GGATC 2 cut(s) 307, 1121
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 206, 1053
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 136, 285
BssMI GATC 6 cut(s) 111, 299, 709, 772, 1126, 1378
BssNAI GTATAC 1 cut(s) 223
BssSI CACGAG 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 136
Bst1107I GTATAC 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 410, 464
Bst6I CTCTTC 2 cut(s) 492, 543
BstAFI CTTAAG 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 226
BstDEI CTNAG 7 cut(s) 308, 326, 483, 533, 895, 953, 1211
BstDSI CCRYGG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 5 cut(s) 132, 319, 402, 1048, 1138
BstFNI CGCG 2 cut(s) 287, 1407
BstHHI GCGC 2 cut(s) 963, 1407
BstKTI GATC 6 cut(s) 114, 302, 712, 775, 1129, 1381
BstMAI GTCTC 2 cut(s) 529, 1194
BstMBI GATC 6 cut(s) 111, 299, 709, 772, 1126, 1378
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 4 cut(s) 673, 917, 1156, 1216
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 678
BstUI CGCG 2 cut(s) 287, 1407
BstV1I GCAGC 1 cut(s) 1063
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BstZ17I GTATAC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 867
BtrI CACGTC 1 cut(s) 565
BtsCI GGATG 5 cut(s) 132, 319, 402, 1048, 1138
CciI TCATGA 1 cut(s) 739
CfoI GCGC 2 cut(s) 963, 1407
Cfr13I GGNCC 4 cut(s) 410, 966, 1081, 1241
Cfr42I CCGCGG 1 cut(s) 288
Csp6I GTAC 3 cut(s) 146, 779, 1303
CviAII CATG 4 cut(s) 380, 596, 740, 838
CviQI GTAC 3 cut(s) 146, 779, 1303
DdeI CTNAG 7 cut(s) 308, 326, 483, 533, 895, 953, 1211
DpnI GATC 6 cut(s) 113, 301, 711, 774, 1128, 1380
DpnII GATC 6 cut(s) 111, 299, 709, 772, 1126, 1378
Eam1104I CTCTTC 2 cut(s) 492, 543
EarI CTCTTC 2 cut(s) 492, 543
Ecl136II GAGCTC 1 cut(s) 1021
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 1023
Eco47I GGWCC 4 cut(s) 410, 966, 1081, 1241
Eco53kI GAGCTC 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 726
Eco88I CYCGRG 1 cut(s) 1291
EcoICRI GAGCTC 1 cut(s) 1021
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 1023
ErhI CCWWGG 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 1194
FaeI CATG 4 cut(s) 383, 599, 743, 841
FaqI GGGAC 1 cut(s) 396
FatI CATG 4 cut(s) 379, 595, 739, 837
FauI CCCGC 3 cut(s) 280, 292, 1143
FbaI TGATCA 2 cut(s) 111, 1378
FblI GTMKAC 2 cut(s) 222, 280
Fnu4HI GCNGC 1 cut(s) 1052
FokI GGATG 5 cut(s) 119, 326, 409, 1055, 1125
FriOI GRGCYC 1 cut(s) 1023
Fsp4HI GCNGC 1 cut(s) 1052
FspBI CTAG 5 cut(s) 12, 60, 84, 758, 794
GlaI GCGC 2 cut(s) 962, 1406
GluI GCNGC 1 cut(s) 1052
HhaI GCGC 2 cut(s) 963, 1407
Hin1II CATG 4 cut(s) 383, 599, 743, 841
Hin6I GCGC 2 cut(s) 961, 1405
HinP1I GCGC 2 cut(s) 961, 1405
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HindIII AAGCTT 2 cut(s) 124, 1263
HinfI GANTC 2 cut(s) 529, 620
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 7 cut(s) 148, 223, 281, 467, 676, 877, 1373
Hpy188I TCNGA 6 cut(s) 91, 329, 534, 625, 706, 847
Hpy188III TCNNGA 9 cut(s) 103, 118, 713, 740, 983, 1067, 1130, 1169, 1258
Hpy8I GTNNAC 7 cut(s) 148, 223, 281, 467, 676, 877, 1373
HpyAV CCTTC 5 cut(s) 382, 562, 898, 1293, 1352
HpyCH4III ACNGT 2 cut(s) 410, 464
HpyCH4IV ACGT 3 cut(s) 225, 564, 1399
HpyCH4V TGCA 5 cut(s) 132, 199, 676, 1046, 1051
HpyF10VI GCNNNNNNNGC 4 cut(s) 673, 917, 1156, 1216
HpyF3I CTNAG 7 cut(s) 308, 326, 483, 533, 895, 953, 1211
HpySE526I ACGT 3 cut(s) 225, 564, 1399
Hsp92II CATG 4 cut(s) 383, 599, 743, 841
HspAI GCGC 2 cut(s) 961, 1405
Ksp22I TGATCA 2 cut(s) 111, 1378
KspI CCGCGG 1 cut(s) 288
Kzo9I GATC 6 cut(s) 111, 299, 709, 772, 1126, 1378
LmnI GCTCC 3 cut(s) 580, 733, 1216
LpnPI CCDG 7 cut(s) 222, 379, 426, 761, 949, 1052, 1143
Lsp1109I GCAGC 1 cut(s) 1063
LweI GCATC 5 cut(s) 141, 844, 851, 1033, 1147
MaeI CTAG 5 cut(s) 12, 60, 84, 758, 794
MaeII ACGT 3 cut(s) 225, 564, 1399
MaeIII GTNAC 3 cut(s) 32, 1255, 1363
MalI GATC 6 cut(s) 113, 301, 711, 774, 1128, 1380
MboI GATC 6 cut(s) 111, 299, 709, 772, 1126, 1378
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 2 cut(s) 678, 1023
MluCI AATT 6 cut(s) 46, 194, 698, 932, 998, 1006
MlyI GAGTC 1 cut(s) 629
MmeI TCCRAC 4 cut(s) 281, 597, 1126, 1251
MroXI GAANNNNTTC 1 cut(s) 1034
MseI TTAA 6 cut(s) 158, 165, 186, 249, 335, 936
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 287
MspCI CTTAAG 1 cut(s) 185
MvnI CGCG 2 cut(s) 287, 1407
MwoI GCNNNNNNNGC 4 cut(s) 673, 917, 1156, 1216
NdeII GATC 6 cut(s) 111, 299, 709, 772, 1126, 1378
NlaIII CATG 4 cut(s) 383, 599, 743, 841
NlaIV GGNNCC 2 cut(s) 412, 685
NmuCI GTSAC 2 cut(s) 1255, 1363
PagI TCATGA 1 cut(s) 739
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 1 cut(s) 529
PkrI GCNGC 1 cut(s) 1053
PleI GAGTC 1 cut(s) 628
PpsI GAGTC 1 cut(s) 628
Ppu21I YACGTR 1 cut(s) 226
PsiI TTATAA 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 1023
PspN4I GGNNCC 2 cut(s) 412, 685
PspPI GGNCC 4 cut(s) 410, 966, 1081, 1241
PsuI RGATCY 1 cut(s) 709
RsaI GTAC 3 cut(s) 147, 780, 1304
RsaNI GTAC 3 cut(s) 146, 779, 1303
RseI CAYNNNNRTG 1 cut(s) 21
SacI GAGCTC 1 cut(s) 1023
SacII CCGCGG 1 cut(s) 288
SalI GTCGAC 1 cut(s) 279
SaqAI TTAA 6 cut(s) 158, 165, 186, 249, 335, 936
SatI GCNGC 1 cut(s) 1052
Sau3AI GATC 6 cut(s) 111, 299, 709, 772, 1126, 1378
Sau96I GGNCC 4 cut(s) 410, 966, 1081, 1241
SchI GAGTC 1 cut(s) 629
SduI GDGCHC 2 cut(s) 678, 1023
SfaNI GCATC 5 cut(s) 141, 844, 851, 1033, 1147
SfcI CTRYAG 1 cut(s) 477
Sfr303I CCGCGG 1 cut(s) 288
SgrBI CCGCGG 1 cut(s) 288
SinI GGWCC 4 cut(s) 410, 966, 1081, 1241
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 2 cut(s) 185, 858
SmoI CTYRAG 2 cut(s) 185, 858
Sse9I AATT 6 cut(s) 46, 194, 698, 932, 998, 1006
SsiI CCGC 5 cut(s) 285, 287, 1150, 1253, 1407
SspI AATATT 1 cut(s) 253
SspMI CTAG 5 cut(s) 12, 60, 84, 758, 794
SstI GAGCTC 1 cut(s) 1023
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 410, 464
TaiI ACGT 3 cut(s) 228, 567, 1402
TaqI TCGA 4 cut(s) 280, 302, 639, 1161
TaqII GACCGA 1 cut(s) 1098
TasI AATT 6 cut(s) 46, 194, 698, 932, 998, 1006
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 6 cut(s) 158, 165, 186, 249, 335, 936
Tru9I TTAA 6 cut(s) 158, 165, 186, 249, 335, 936
TseFI GTSAC 2 cut(s) 1255, 1363
TseI GCWGC 1 cut(s) 1051
Tsp45I GTSAC 2 cut(s) 1255, 1363
TspDTI ATGAA 4 cut(s) 413, 710, 728, 845
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 674
VpaK11BI GGWCC 4 cut(s) 410, 966, 1081, 1241
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 1 cut(s) 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XmiI GTMKAC 2 cut(s) 222, 280
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 5 cut(s) 12, 60, 84, 758, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.