XH XS domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48670 AT3G48670 AT3G48670 AT4G01780 |
| fragaria_vesca | FvH4_7g22690 FvH4_7g22690 |
| malus_domestica | MD01G1135500.v1.1 MD07G1200200.v1.1 |
| prunus_persica | Prupe.2G236900_v2.0.a1 Prupe.2G236900_v2.0.a1 |
| pyrus_communis | pycom01g15620 pycom07g18700 |
| rosa_chinensis | RchiOBHm_Chr1g0367771 |
| rosa_laevigata | RLG00000027264 |
| rosa_multiflora | Rmu_ssc0000395.1_g000021 |
| rosa_roxburghii | Rroxscaffold_4G00289230 Rroxscaffold_4G00289250 |
| rosa_rugosa | Rorug01G0336500 |
| rosa_samantha | Rh1AG343700 Rh1BG305600 Rh1CG321200 Rh1DG337800 |
| rosa_wichuraiana | Rw1G030590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 456 |
| AccI | GTMKAC | 2 cut(s) | 222, 280 |
| AccII | CGCG | 2 cut(s) | 287, 1407 |
| AciI | CCGC | 5 cut(s) | 285, 287, 1150, 1253, 1407 |
| AclWI | GGATC | 2 cut(s) | 307, 1121 |
| AcsI | RAATTY | 1 cut(s) | 932 |
| AcuI | CTGAAG | 1 cut(s) | 726 |
| AfaI | GTAC | 3 cut(s) | 147, 780, 1304 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 142, 419, 1108 |
| AflII | CTTAAG | 1 cut(s) | 185 |
| AjiI | CACGTC | 1 cut(s) | 565 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1253, 1285 |
| Alw21I | GWGCWC | 2 cut(s) | 678, 1023 |
| Alw26I | GTCTC | 2 cut(s) | 529, 1194 |
| Alw44I | GTGCAC | 1 cut(s) | 674 |
| AlwI | GGATC | 2 cut(s) | 307, 1121 |
| Ama87I | CYCGRG | 1 cut(s) | 1291 |
| ApaLI | GTGCAC | 1 cut(s) | 674 |
| ApeKI | GCWGC | 1 cut(s) | 1051 |
| ApoI | RAATTY | 1 cut(s) | 932 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1034 |
| AspLEI | GCGC | 2 cut(s) | 963, 1407 |
| AspS9I | GGNCC | 4 cut(s) | 410, 966, 1081, 1241 |
| AsuHPI | GGTGA | 1 cut(s) | 302 |
| AvaI | CYCGRG | 1 cut(s) | 1291 |
| AvaII | GGWCC | 4 cut(s) | 410, 966, 1081, 1241 |
| BaeGI | GKGCMC | 1 cut(s) | 678 |
| BanII | GRGCYC | 1 cut(s) | 1023 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1291, 1323 |
| BauI | CACGAG | 1 cut(s) | 118 |
| Bbv12I | GWGCWC | 2 cut(s) | 678, 1023 |
| BbvCI | CCTCAGC | 1 cut(s) | 1211 |
| BbvI | GCAGC | 1 cut(s) | 1063 |
| BccI | CCATC | 4 cut(s) | 269, 368, 842, 1232 |
| BclI | TGATCA | 2 cut(s) | 111, 1378 |
| BcoDI | GTCTC | 2 cut(s) | 529, 1194 |
| BfaI | CTAG | 5 cut(s) | 12, 60, 84, 758, 794 |
| BfmI | CTRYAG | 1 cut(s) | 477 |
| BfrI | CTTAAG | 1 cut(s) | 185 |
| BglII | AGATCT | 1 cut(s) | 709 |
| BisI | GCNGC | 1 cut(s) | 1052 |
| BlpI | GCTNAGC | 1 cut(s) | 483 |
| BlsI | GCNGC | 1 cut(s) | 1053 |
| Bme18I | GGWCC | 4 cut(s) | 410, 966, 1081, 1241 |
| BmeT110I | CYCGRG | 1 cut(s) | 1291 |
| BmgBI | CACGTC | 1 cut(s) | 565 |
| BmgT120I | GGNCC | 4 cut(s) | 410, 966, 1081, 1241 |
| BmiI | GGNNCC | 2 cut(s) | 412, 685 |
| BmsI | GCATC | 5 cut(s) | 141, 844, 851, 1033, 1147 |
| Bpu10I | CCTNAGC | 2 cut(s) | 308, 1211 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 483 |
| BpuEI | CTTGAG | 1 cut(s) | 843 |
| BsaAI | YACGTR | 1 cut(s) | 226 |
| BsaBI | GATNNNNATC | 2 cut(s) | 110, 1137 |
| BsaJI | CCNNGG | 2 cut(s) | 136, 285 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1008, 1038 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 142, 419, 1108 |
| Bse1I | ACTGG | 1 cut(s) | 398 |
| Bse3DI | GCAATG | 2 cut(s) | 206, 1053 |
| Bse8I | GATNNNNATC | 2 cut(s) | 110, 1137 |
| BseDI | CCNNGG | 2 cut(s) | 136, 285 |
| BseGI | GGATG | 5 cut(s) | 132, 319, 402, 1048, 1138 |
| BseJI | GATNNNNATC | 2 cut(s) | 110, 1137 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 142, 419, 1108 |
| BseMI | GCAATG | 2 cut(s) | 206, 1053 |
| BseMII | CTCAG | 4 cut(s) | 340, 474, 524, 1202 |
| BseNI | ACTGG | 1 cut(s) | 398 |
| BseRI | GAGGAG | 2 cut(s) | 593, 746 |
| BseSI | GKGCMC | 1 cut(s) | 678 |
| BseXI | GCAGC | 1 cut(s) | 1063 |
| Bsh1236I | CGCG | 2 cut(s) | 287, 1407 |
| Bsh1285I | CGRYCG | 1 cut(s) | 463 |
| BsiEI | CGRYCG | 1 cut(s) | 463 |
| BsiHKAI | GWGCWC | 2 cut(s) | 678, 1023 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1291 |
| BslFI | GGGAC | 1 cut(s) | 396 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 142, 419, 1108 |
| BsmAI | GTCTC | 2 cut(s) | 529, 1194 |
| BsmBI | CGTCTC | 1 cut(s) | 1194 |
| BsmFI | GGGAC | 1 cut(s) | 396 |
| BsoBI | CYCGRG | 1 cut(s) | 1291 |
| Bsp1286I | GDGCHC | 2 cut(s) | 678, 1023 |
| Bsp143I | GATC | 6 cut(s) | 111, 299, 709, 772, 1126, 1378 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 483 |
| BspACI | CCGC | 5 cut(s) | 285, 287, 1150, 1253, 1407 |
| BspCNI | CTCAG | 4 cut(s) | 339, 475, 525, 1203 |
| BspFNI | CGCG | 2 cut(s) | 287, 1407 |
| BspHI | TCATGA | 1 cut(s) | 739 |
| BspLI | GGNNCC | 2 cut(s) | 412, 685 |
| BspPI | GGATC | 2 cut(s) | 307, 1121 |
| BspTI | CTTAAG | 1 cut(s) | 185 |
| BsrDI | GCAATG | 2 cut(s) | 206, 1053 |
| BsrI | ACTGG | 1 cut(s) | 398 |
| BssECI | CCNNGG | 2 cut(s) | 136, 285 |
| BssMI | GATC | 6 cut(s) | 111, 299, 709, 772, 1126, 1378 |
| BssNAI | GTATAC | 1 cut(s) | 223 |
| BssSI | CACGAG | 1 cut(s) | 118 |
| BssT1I | CCWWGG | 1 cut(s) | 136 |
| Bst1107I | GTATAC | 1 cut(s) | 223 |
| Bst2BI | CACGAG | 1 cut(s) | 118 |
| Bst4CI | ACNGT | 2 cut(s) | 410, 464 |
| Bst6I | CTCTTC | 2 cut(s) | 492, 543 |
| BstAFI | CTTAAG | 1 cut(s) | 185 |
| BstBAI | YACGTR | 1 cut(s) | 226 |
| BstDEI | CTNAG | 7 cut(s) | 308, 326, 483, 533, 895, 953, 1211 |
| BstDSI | CCRYGG | 1 cut(s) | 285 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 140 |
| BstF5I | GGATG | 5 cut(s) | 132, 319, 402, 1048, 1138 |
| BstFNI | CGCG | 2 cut(s) | 287, 1407 |
| BstHHI | GCGC | 2 cut(s) | 963, 1407 |
| BstKTI | GATC | 6 cut(s) | 114, 302, 712, 775, 1129, 1381 |
| BstMAI | GTCTC | 2 cut(s) | 529, 1194 |
| BstMBI | GATC | 6 cut(s) | 111, 299, 709, 772, 1126, 1378 |
| BstMCI | CGRYCG | 1 cut(s) | 463 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 673, 917, 1156, 1216 |
| BstSFI | CTRYAG | 1 cut(s) | 477 |
| BstSLI | GKGCMC | 1 cut(s) | 678 |
| BstUI | CGCG | 2 cut(s) | 287, 1407 |
| BstV1I | GCAGC | 1 cut(s) | 1063 |
| BstX2I | RGATCY | 1 cut(s) | 709 |
| BstYI | RGATCY | 1 cut(s) | 709 |
| BstZ17I | GTATAC | 1 cut(s) | 223 |
| BtgI | CCRYGG | 1 cut(s) | 285 |
| BtgZI | GCGATG | 1 cut(s) | 867 |
| BtrI | CACGTC | 1 cut(s) | 565 |
| BtsCI | GGATG | 5 cut(s) | 132, 319, 402, 1048, 1138 |
| CciI | TCATGA | 1 cut(s) | 739 |
| CfoI | GCGC | 2 cut(s) | 963, 1407 |
| Cfr13I | GGNCC | 4 cut(s) | 410, 966, 1081, 1241 |
| Cfr42I | CCGCGG | 1 cut(s) | 288 |
| Csp6I | GTAC | 3 cut(s) | 146, 779, 1303 |
| CviAII | CATG | 4 cut(s) | 380, 596, 740, 838 |
| CviQI | GTAC | 3 cut(s) | 146, 779, 1303 |
| DdeI | CTNAG | 7 cut(s) | 308, 326, 483, 533, 895, 953, 1211 |
| DpnI | GATC | 6 cut(s) | 113, 301, 711, 774, 1128, 1380 |
| DpnII | GATC | 6 cut(s) | 111, 299, 709, 772, 1126, 1378 |
| Eam1104I | CTCTTC | 2 cut(s) | 492, 543 |
| EarI | CTCTTC | 2 cut(s) | 492, 543 |
| Ecl136II | GAGCTC | 1 cut(s) | 1021 |
| Eco130I | CCWWGG | 1 cut(s) | 136 |
| Eco24I | GRGCYC | 1 cut(s) | 1023 |
| Eco47I | GGWCC | 4 cut(s) | 410, 966, 1081, 1241 |
| Eco53kI | GAGCTC | 1 cut(s) | 1021 |
| Eco57I | CTGAAG | 1 cut(s) | 726 |
| Eco88I | CYCGRG | 1 cut(s) | 1291 |
| EcoICRI | GAGCTC | 1 cut(s) | 1021 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 140 |
| EcoT14I | CCWWGG | 1 cut(s) | 136 |
| EcoT38I | GRGCYC | 1 cut(s) | 1023 |
| ErhI | CCWWGG | 1 cut(s) | 136 |
| Esp3I | CGTCTC | 1 cut(s) | 1194 |
| FaeI | CATG | 4 cut(s) | 383, 599, 743, 841 |
| FaqI | GGGAC | 1 cut(s) | 396 |
| FatI | CATG | 4 cut(s) | 379, 595, 739, 837 |
| FauI | CCCGC | 3 cut(s) | 280, 292, 1143 |
| FbaI | TGATCA | 2 cut(s) | 111, 1378 |
| FblI | GTMKAC | 2 cut(s) | 222, 280 |
| Fnu4HI | GCNGC | 1 cut(s) | 1052 |
| FokI | GGATG | 5 cut(s) | 119, 326, 409, 1055, 1125 |
| FriOI | GRGCYC | 1 cut(s) | 1023 |
| Fsp4HI | GCNGC | 1 cut(s) | 1052 |
| FspBI | CTAG | 5 cut(s) | 12, 60, 84, 758, 794 |
| GlaI | GCGC | 2 cut(s) | 962, 1406 |
| GluI | GCNGC | 1 cut(s) | 1052 |
| HhaI | GCGC | 2 cut(s) | 963, 1407 |
| Hin1II | CATG | 4 cut(s) | 383, 599, 743, 841 |
| Hin6I | GCGC | 2 cut(s) | 961, 1405 |
| HinP1I | GCGC | 2 cut(s) | 961, 1405 |
| HincII | GTYRAC | 1 cut(s) | 281 |
| HindII | GTYRAC | 1 cut(s) | 281 |
| HindIII | AAGCTT | 2 cut(s) | 124, 1263 |
| HinfI | GANTC | 2 cut(s) | 529, 620 |
| HphI | GGTGA | 1 cut(s) | 302 |
| Hpy166II | GTNNAC | 7 cut(s) | 148, 223, 281, 467, 676, 877, 1373 |
| Hpy188I | TCNGA | 6 cut(s) | 91, 329, 534, 625, 706, 847 |
| Hpy188III | TCNNGA | 9 cut(s) | 103, 118, 713, 740, 983, 1067, 1130, 1169, 1258 |
| Hpy8I | GTNNAC | 7 cut(s) | 148, 223, 281, 467, 676, 877, 1373 |
| HpyAV | CCTTC | 5 cut(s) | 382, 562, 898, 1293, 1352 |
| HpyCH4III | ACNGT | 2 cut(s) | 410, 464 |
| HpyCH4IV | ACGT | 3 cut(s) | 225, 564, 1399 |
| HpyCH4V | TGCA | 5 cut(s) | 132, 199, 676, 1046, 1051 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 673, 917, 1156, 1216 |
| HpyF3I | CTNAG | 7 cut(s) | 308, 326, 483, 533, 895, 953, 1211 |
| HpySE526I | ACGT | 3 cut(s) | 225, 564, 1399 |
| Hsp92II | CATG | 4 cut(s) | 383, 599, 743, 841 |
| HspAI | GCGC | 2 cut(s) | 961, 1405 |
| Ksp22I | TGATCA | 2 cut(s) | 111, 1378 |
| KspI | CCGCGG | 1 cut(s) | 288 |
| Kzo9I | GATC | 6 cut(s) | 111, 299, 709, 772, 1126, 1378 |
| LmnI | GCTCC | 3 cut(s) | 580, 733, 1216 |
| LpnPI | CCDG | 7 cut(s) | 222, 379, 426, 761, 949, 1052, 1143 |
| Lsp1109I | GCAGC | 1 cut(s) | 1063 |
| LweI | GCATC | 5 cut(s) | 141, 844, 851, 1033, 1147 |
| MaeI | CTAG | 5 cut(s) | 12, 60, 84, 758, 794 |
| MaeII | ACGT | 3 cut(s) | 225, 564, 1399 |
| MaeIII | GTNAC | 3 cut(s) | 32, 1255, 1363 |
| MalI | GATC | 6 cut(s) | 113, 301, 711, 774, 1128, 1380 |
| MboI | GATC | 6 cut(s) | 111, 299, 709, 772, 1126, 1378 |
| MflI | RGATCY | 1 cut(s) | 709 |
| MhlI | GDGCHC | 2 cut(s) | 678, 1023 |
| MluCI | AATT | 6 cut(s) | 46, 194, 698, 932, 998, 1006 |
| MlyI | GAGTC | 1 cut(s) | 629 |
| MmeI | TCCRAC | 4 cut(s) | 281, 597, 1126, 1251 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1034 |
| MseI | TTAA | 6 cut(s) | 158, 165, 186, 249, 335, 936 |
| MslI | CAYNNNNRTG | 1 cut(s) | 21 |
| MspA1I | CMGCKG | 1 cut(s) | 287 |
| MspCI | CTTAAG | 1 cut(s) | 185 |
| MvnI | CGCG | 2 cut(s) | 287, 1407 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 673, 917, 1156, 1216 |
| NdeII | GATC | 6 cut(s) | 111, 299, 709, 772, 1126, 1378 |
| NlaIII | CATG | 4 cut(s) | 383, 599, 743, 841 |
| NlaIV | GGNNCC | 2 cut(s) | 412, 685 |
| NmuCI | GTSAC | 2 cut(s) | 1255, 1363 |
| PagI | TCATGA | 1 cut(s) | 739 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1034 |
| PfeI | GAWTC | 1 cut(s) | 529 |
| PkrI | GCNGC | 1 cut(s) | 1053 |
| PleI | GAGTC | 1 cut(s) | 628 |
| PpsI | GAGTC | 1 cut(s) | 628 |
| Ppu21I | YACGTR | 1 cut(s) | 226 |
| PsiI | TTATAA | 1 cut(s) | 456 |
| Psp124BI | GAGCTC | 1 cut(s) | 1023 |
| PspN4I | GGNNCC | 2 cut(s) | 412, 685 |
| PspPI | GGNCC | 4 cut(s) | 410, 966, 1081, 1241 |
| PsuI | RGATCY | 1 cut(s) | 709 |
| RsaI | GTAC | 3 cut(s) | 147, 780, 1304 |
| RsaNI | GTAC | 3 cut(s) | 146, 779, 1303 |
| RseI | CAYNNNNRTG | 1 cut(s) | 21 |
| SacI | GAGCTC | 1 cut(s) | 1023 |
| SacII | CCGCGG | 1 cut(s) | 288 |
| SalI | GTCGAC | 1 cut(s) | 279 |
| SaqAI | TTAA | 6 cut(s) | 158, 165, 186, 249, 335, 936 |
| SatI | GCNGC | 1 cut(s) | 1052 |
| Sau3AI | GATC | 6 cut(s) | 111, 299, 709, 772, 1126, 1378 |
| Sau96I | GGNCC | 4 cut(s) | 410, 966, 1081, 1241 |
| SchI | GAGTC | 1 cut(s) | 629 |
| SduI | GDGCHC | 2 cut(s) | 678, 1023 |
| SfaNI | GCATC | 5 cut(s) | 141, 844, 851, 1033, 1147 |
| SfcI | CTRYAG | 1 cut(s) | 477 |
| Sfr303I | CCGCGG | 1 cut(s) | 288 |
| SgrBI | CCGCGG | 1 cut(s) | 288 |
| SinI | GGWCC | 4 cut(s) | 410, 966, 1081, 1241 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 21 |
| SmlI | CTYRAG | 2 cut(s) | 185, 858 |
| SmoI | CTYRAG | 2 cut(s) | 185, 858 |
| Sse9I | AATT | 6 cut(s) | 46, 194, 698, 932, 998, 1006 |
| SsiI | CCGC | 5 cut(s) | 285, 287, 1150, 1253, 1407 |
| SspI | AATATT | 1 cut(s) | 253 |
| SspMI | CTAG | 5 cut(s) | 12, 60, 84, 758, 794 |
| SstI | GAGCTC | 1 cut(s) | 1023 |
| StyI | CCWWGG | 1 cut(s) | 136 |
| TaaI | ACNGT | 2 cut(s) | 410, 464 |
| TaiI | ACGT | 3 cut(s) | 228, 567, 1402 |
| TaqI | TCGA | 4 cut(s) | 280, 302, 639, 1161 |
| TaqII | GACCGA | 1 cut(s) | 1098 |
| TasI | AATT | 6 cut(s) | 46, 194, 698, 932, 998, 1006 |
| TfiI | GAWTC | 1 cut(s) | 529 |
| Tru1I | TTAA | 6 cut(s) | 158, 165, 186, 249, 335, 936 |
| Tru9I | TTAA | 6 cut(s) | 158, 165, 186, 249, 335, 936 |
| TseFI | GTSAC | 2 cut(s) | 1255, 1363 |
| TseI | GCWGC | 1 cut(s) | 1051 |
| Tsp45I | GTSAC | 2 cut(s) | 1255, 1363 |
| TspDTI | ATGAA | 4 cut(s) | 413, 710, 728, 845 |
| Vha464I | CTTAAG | 1 cut(s) | 185 |
| VneI | GTGCAC | 1 cut(s) | 674 |
| VpaK11BI | GGWCC | 4 cut(s) | 410, 966, 1081, 1241 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 140 |
| XapI | RAATTY | 1 cut(s) | 932 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 677 |
| XmiI | GTMKAC | 2 cut(s) | 222, 280 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1034 |
| XspI | CTAG | 5 cut(s) | 12, 60, 84, 758, 794 |