Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008273

Physical Location & Seq

Genomic Coordinates Forward (+)

15418040 .. 15419703

Gene Structure 1664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGGAGTGTGGCGGATCATAGCTCTGAAGATGATACCGATATGAGCGAAACAGAACTGGATGAGGATGTAGAAGAATATTATGAAGAGCTGAAGAATGGAAAACACAGTGTGAGAAACTCAGATGGGACATATACTTGCCCTTTCTGCCCGAATAAGAAAAAGCGGGGTTTTGTTCGCAAGGACCTTCTCCAACATGCTTCTGGGGTGGGAAAGAGTACTTCAGAAAAGAGAAGCACAGACGAAAAGGCCAAACACTTGGCTGTGGTGAAATATTTGGAAAATGATCTGGCAGCTGAAGGTGGCCCATCTAAACCTGTGGGTGAGGAAAAACCCCCAATTGATTGTGACCAGGATGAAAAGTTAGTGTGGCCTTGGACAGGGGTAGTGGTTAATATTCCGACCAGACGGGCCAATGATGGGCGGTATGTCGGAGAAAGTGGATCGAAACTGAGAGATGAGCTAATAAGGAGAGGGTTCAATCCCTTAAGGGTGCACCCTTTATGGAATTTTCGGGGTCACTCGGGAAGTGCGATCGTGGAGTTTAGGAAAGATTGGCCTGGCTATGTTAATGCCATGTCATTTGAGAAGGCTTATGATGTAGACCATCATGGAAAAAAGGACTGGGAGACTAACAGTGACCAAAAATCTGGACTTTATGCTTGGGTTGCTCGTTCAGATGACTATAAAGCTTCCAATATTGTTGGAGAACACCTCCGCAAGATTGGAGACCTTAAATCAATTTCTGAAATTACGGAGGAAGAAGCCAGGAAGCAGGATAGACTAGTAACTAATCTTAACAACATCATTGAGGTCAAGTACAAAGACTTGGAAGAGATGGAGCTGAAATGTAGTGAAACTACAAACTCCATTAAGAGCGTAATCACAGAGAAAGAAAAGATCATTCAGACTTATAATGAAGAGATTAAAAAGATACAAACGAGCGCTCGTGATCGCTTTCAGAGGATATTTGGCGACCATGAAAAGCTTAAGTTGCAACTCGAAACTCAAAAGAAAGAGCTAGAGTCCCGCATAGAAGAAATTGGACGGAGAAGCGTGCAGTTGCCAACGAAGATGAAAGTAGGAAGCTTGCTGAGGAGATTGAAAAGAATTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010569 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046686 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1902679 GO:1903506 GO:1903507 GO:1905348 GO:1990904 GO:2000112 GO:2000113 GO:2000779 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

373

Amino Acids

42.73

Weight (kDa)

6.59

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48670 AT3G48670 AT3G48670 AT4G01780
fragaria_vesca	FvH4_7g22690 FvH4_7g22690
malus_domestica	MD01G1135500.v1.1 MD07G1200200.v1.1
prunus_persica	Prupe.2G236900_v2.0.a1 Prupe.2G236900_v2.0.a1
pyrus_communis	pycom01g15620 pycom07g18700
rosa_chinensis	RchiOBHm_Chr1g0367771
rosa_laevigata	RLG00000027264
rosa_multiflora	Rmu_ssc0000395.1_g000021
rosa_roxburghii	Rroxscaffold_4G00289230 Rroxscaffold_4G00289250
rosa_rugosa	Rorug01G0336500
rosa_samantha	Rh1AG343700 Rh1BG305600 Rh1CG321200 Rh1DG337800
rosa_wichuraiana	Rw1G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AccI	GTMKAC	1 cut(s)	603
AciI	CCGC	5 cut(s)	14, 166, 424, 718, 1030
AclWI	GGATC	2 cut(s)	24, 451
AcsI	RAATTY	2 cut(s)	508, 1110
AcuI	CTGAAG	4 cut(s)	48, 113, 207, 318
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	2 cut(s)	220, 821
AfeI	AGCGCT	1 cut(s)	946
AfiI	CCNNNNNNNGG	2 cut(s)	380, 420
AflII	CTTAAG	2 cut(s)	487, 989
AgsI	TTSAA	2 cut(s)	481, 1105
AhlI	ACTAGT	1 cut(s)	784
AjnI	CCWGG	3 cut(s)	351, 559, 767
AluBI	AGCT	9 cut(s)	24, 91, 296, 463, 692, 844, 988, 1021, 1089
AluI	AGCT	9 cut(s)	24, 91, 296, 463, 692, 844, 988, 1021, 1089
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	2 cut(s)	623, 723
Alw44I	GTGCAC	1 cut(s)	494
AlwI	GGATC	2 cut(s)	24, 451
Ama87I	CYCGRG	1 cut(s)	523
Aor51HI	AGCGCT	1 cut(s)	946
AoxI	GGCC	5 cut(s)	249, 304, 371, 411, 557
ApaLI	GTGCAC	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	508, 1110
AspLEI	GCGC	1 cut(s)	947
AspS9I	GGNCC	3 cut(s)	184, 305, 411
AsuHPI	GGTGA	2 cut(s)	280, 335
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	498
BauI	CACGAG	1 cut(s)	948
Bbv12I	GWGCWC	1 cut(s)	498
BbvCI	CCTCAGC	1 cut(s)	1094
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	5 cut(s)	119, 316, 413, 615, 832
BciT130I	CCWGG	3 cut(s)	353, 561, 769
BcoDI	GTCTC	2 cut(s)	623, 723
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	2 cut(s)	785, 1022
BfoI	RGCGCY	1 cut(s)	948
BfrI	CTTAAG	2 cut(s)	487, 989
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	3 cut(s)	353, 561, 769
Bme18I	GGWCC	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	523
BmgT120I	GGNCC	3 cut(s)	184, 305, 411
BmrFI	CCNGG	3 cut(s)	353, 561, 769
BmrI	ACTGGG	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	634
BplI	GAGNNNNNCTC	2 cut(s)	699, 731
Bpu10I	CCTNAGC	1 cut(s)	1094
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 420
Bse1I	ACTGG	2 cut(s)	63, 629
BseBI	CCWGG	3 cut(s)	353, 561, 769
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	3 cut(s)	67, 73, 361
BseLI	CCNNNNNNNGG	2 cut(s)	380, 420
BseMII	CTCAG	3 cut(s)	135, 443, 1085
BseNI	ACTGG	2 cut(s)	63, 629
BseRI	GAGGAG	1 cut(s)	1111
BseSI	GKGCMC	1 cut(s)	498
BseXI	GCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	1079
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	5 cut(s)	251, 306, 373, 413, 559
BsiEI	CGRYCG	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	498
BsiHKCI	CYCGRG	1 cut(s)	523
BslFI	GGGAC	2 cut(s)	142, 1012
BslI	CCNNNNNNNGG	2 cut(s)	380, 420
BsmAI	GTCTC	2 cut(s)	623, 723
BsmFI	GGGAC	2 cut(s)	142, 1012
BsnI	GGCC	5 cut(s)	251, 306, 373, 413, 559
Bso31I	GGTCTC	1 cut(s)	723
BsoBI	CYCGRG	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	6 cut(s)	16, 286, 443, 534, 900, 952
BspACI	CCGC	5 cut(s)	14, 166, 424, 718, 1030
BspANI	GGCC	5 cut(s)	251, 306, 373, 413, 559
BspCNI	CTCAG	3 cut(s)	134, 444, 1086
BspPI	GGATC	2 cut(s)	24, 451
BspQI	GCTCTTC	1 cut(s)	81
BspTI	CTTAAG	2 cut(s)	487, 989
BspTNI	GGTCTC	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	63, 629
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	6 cut(s)	16, 286, 443, 534, 900, 952
BssSI	CACGAG	1 cut(s)	948
BssT1I	CCWWGG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	948
Bst2UI	CCWGG	3 cut(s)	353, 561, 769
Bst4CI	ACNGT	2 cut(s)	110, 638
Bst6I	CTCTTC	3 cut(s)	81, 828, 915
BstAFI	CTTAAG	2 cut(s)	487, 989
BstC8I	GCNNGC	2 cut(s)	1058, 1091
BstDEI	CTNAG	3 cut(s)	121, 452, 1094
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	67, 73, 361
BstH2I	RGCGCY	1 cut(s)	948
BstHHI	GCGC	1 cut(s)	947
BstKTI	GATC	6 cut(s)	19, 289, 446, 537, 903, 955
BstMAI	GTCTC	2 cut(s)	623, 723
BstMBI	GATC	6 cut(s)	16, 286, 443, 534, 900, 952
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 668, 994
BstNI	CCWGG	3 cut(s)	353, 561, 769
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	3 cut(s)	351, 559, 767
BstSLI	GKGCMC	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	305
BstXI	CCANNNNNNTGG	2 cut(s)	259, 650
BsuRI	GGCC	5 cut(s)	251, 306, 373, 413, 559
BtsCI	GGATG	3 cut(s)	67, 73, 361
BtsIMutI	CAGTG	2 cut(s)	115, 643
Cac8I	GCNNGC	2 cut(s)	1058, 1091
CfoI	GCGC	1 cut(s)	947
Cfr13I	GGNCC	3 cut(s)	184, 305, 411
Csp6I	GTAC	2 cut(s)	219, 820
CviAII	CATG	4 cut(s)	197, 577, 611, 980
CviQI	GTAC	2 cut(s)	219, 820
DdeI	CTNAG	3 cut(s)	121, 452, 1094
DpnI	GATC	6 cut(s)	18, 288, 445, 536, 902, 954
DpnII	GATC	6 cut(s)	16, 286, 443, 534, 900, 952
DraIII	CACNNNGTG	1 cut(s)	112
Eam1104I	CTCTTC	3 cut(s)	81, 828, 915
EarI	CTCTTC	3 cut(s)	81, 828, 915
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	374
Eco31I	GGTCTC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	184
Eco47III	AGCGCT	1 cut(s)	946
Eco57I	CTGAAG	4 cut(s)	48, 113, 207, 318
Eco88I	CYCGRG	1 cut(s)	523
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	1110
EcoRII	CCWGG	3 cut(s)	351, 559, 767
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
FaeI	CATG	4 cut(s)	200, 580, 614, 983
FaqI	GGGAC	2 cut(s)	142, 1012
FatI	CATG	4 cut(s)	196, 576, 610, 979
FauI	CCCGC	2 cut(s)	159, 1037
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	3 cut(s)	74, 80, 368
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	2 cut(s)	785, 1022
GlaI	GCGC	1 cut(s)	946
GluI	GCNGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	948
HaeIII	GGCC	5 cut(s)	251, 306, 373, 413, 559
HhaI	GCGC	1 cut(s)	947
Hin1II	CATG	4 cut(s)	200, 580, 614, 983
Hin6I	GCGC	1 cut(s)	945
HinP1I	GCGC	1 cut(s)	945
HindIII	AAGCTT	3 cut(s)	690, 986, 1087
HinfI	GANTC	1 cut(s)	1025
HphI	GGTGA	2 cut(s)	280, 335
Hpy166II	GTNNAC	2 cut(s)	496, 604
Hpy188I	TCNGA	9 cut(s)	28, 124, 226, 402, 434, 679, 748, 909, 963
Hpy188III	TCNNGA	3 cut(s)	525, 651, 950
Hpy8I	GTNNAC	2 cut(s)	496, 604
HpyAV	CCTTC	3 cut(s)	197, 293, 583
HpyCH4III	ACNGT	2 cut(s)	110, 638
HpyCH4V	TGCA	3 cut(s)	496, 997, 1060
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 668, 994
HpyF3I	CTNAG	3 cut(s)	121, 452, 1094
Hsp92II	CATG	4 cut(s)	200, 580, 614, 983
HspAI	GCGC	1 cut(s)	945
Kzo9I	GATC	6 cut(s)	16, 286, 443, 534, 900, 952
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	841
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	2 cut(s)	785, 1022
MaeIII	GTNAC	4 cut(s)	347, 518, 638, 787
MalI	GATC	6 cut(s)	18, 288, 445, 536, 902, 954
MboI	GATC	6 cut(s)	16, 286, 443, 534, 900, 952
MboII	GAAGA	9 cut(s)	41, 86, 98, 106, 773, 845, 932, 1049, 1084
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	6 cut(s)	339, 508, 741, 750, 1041, 1110
MlyI	GAGTC	1 cut(s)	1034
MmeI	TCCRAC	4 cut(s)	217, 412, 425, 685
MnlI	CCTC	8 cut(s)	58, 319, 467, 725, 751, 805, 957, 1089
MseI	TTAA	8 cut(s)	393, 488, 570, 735, 798, 873, 927, 990
MspA1I	CMGCKG	1 cut(s)	296
MspCI	CTTAAG	2 cut(s)	487, 989
MspR9I	CCNGG	3 cut(s)	353, 561, 769
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	3 cut(s)	353, 561, 769
MwoI	GCNNNNNNNGC	3 cut(s)	147, 668, 994
NdeII	GATC	6 cut(s)	16, 286, 443, 534, 900, 952
NlaIII	CATG	4 cut(s)	200, 580, 614, 983
NmuCI	GTSAC	3 cut(s)	347, 518, 638
NspI	RCATGY	1 cut(s)	200
PciSI	GCTCTTC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PkrI	GCNGC	1 cut(s)	295
Ple19I	CGATCG	1 cut(s)	537
PleI	GAGTC	1 cut(s)	1033
PpsI	GAGTC	1 cut(s)	1033
PpuMI	RGGWCCY	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	915
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	3 cut(s)	351, 559, 767
PspGI	CCWGG	3 cut(s)	351, 559, 767
PspPI	GGNCC	3 cut(s)	184, 305, 411
PspPPI	RGGWCCY	1 cut(s)	184
PvuI	CGATCG	1 cut(s)	537
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	2 cut(s)	220, 821
RsaNI	GTAC	2 cut(s)	219, 820
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	8 cut(s)	393, 488, 570, 735, 798, 873, 927, 990
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	6 cut(s)	16, 286, 443, 534, 900, 952
Sau96I	GGNCC	3 cut(s)	184, 305, 411
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	1 cut(s)	1034
ScrFI	CCNGG	3 cut(s)	353, 561, 769
SduI	GDGCHC	1 cut(s)	498
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	2 cut(s)	487, 989
SmoI	CTYRAG	2 cut(s)	487, 989
SpeI	ACTAGT	1 cut(s)	784
Sse9I	AATT	6 cut(s)	339, 508, 741, 750, 1041, 1110
SsiI	CCGC	5 cut(s)	14, 166, 424, 718, 1030
SspI	AATATT	4 cut(s)	80, 275, 397, 700
SspMI	CTAG	2 cut(s)	785, 1022
StyD4I	CCNGG	3 cut(s)	351, 559, 767
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	2 cut(s)	110, 638
TaqI	TCGA	2 cut(s)	446, 1002
TasI	AATT	6 cut(s)	339, 508, 741, 750, 1041, 1110
TatI	WGTACW	2 cut(s)	218, 819
Tru1I	TTAA	8 cut(s)	393, 488, 570, 735, 798, 873, 927, 990
Tru9I	TTAA	8 cut(s)	393, 488, 570, 735, 798, 873, 927, 990
TscAI	CASTG	2 cut(s)	115, 643
TseFI	GTSAC	3 cut(s)	347, 518, 638
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	3 cut(s)	347, 518, 638
TspDTI	ATGAA	5 cut(s)	99, 372, 933, 996, 1091
TspGWI	ACGGA	2 cut(s)	770, 1063
TspRI	CASTG	2 cut(s)	115, 643
Vha464I	CTTAAG	2 cut(s)	487, 989
VneI	GTGCAC	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	2 cut(s)	508, 1110
XceI	RCATGY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	2 cut(s)	785, 1022
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.