Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008273

Physical Location & Seq

Genomic Coordinates Forward (+)

21110886 .. 21112801

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGGGAGCGTGGCAGATCATAGCTCTGAAGATGATACGGATATGAGCGAAACAGAACTGGATGAGGAGGTAGAAGAATATTATGAAGAGCTGAAGAATGGAAAATACAGTGTGAGAAGCTCAGATGGGAGATACACTTGCCCTTTCTGCCCGAGTAAGAAAAAGCGGGATTTTGTTCTCAAGGAACTTCTCCAACATGCTTCTGGGGTGGGAAAGAGTACTTCAGATAAGAGAAGCACAGAAGAAAAGGCTAAACACTTAGCTGTGGTGAAATATTTGGAAAAAGGTCTAGCAGCTGAAGGTGGTCCATCTAAACCTGTGGCTGAAGAACCACCAATTGATTGTGACCAGGATGAAAAGTTGGTGTGGCCTTGGACAGGGGTTGTGGTTAATATTCCAACCAGACGGGCCAATGATGGGCGATACGTCGGAGAAAGTGGATCGAAACTGAGAGATGAGCTAAAAAGGAGGGGATTCAATCCCTTAAGGGTGCACCCTTTATGGAATTATCGGGGTCACTCAGGAAGTGCCGTTGTAGAGTTTAGGAAAGATTGGCCTGGTTATGTTAATGCCATGTCATTTGAGAAGGCTTATGATGTAGACCATCATGGAAAAAAGGACTGGGAGGCTAATAGTGACCAAAAATCTGGACTTTATGCCTGGGTTGCTCGTTCAGATGACTATAAAGCTTCCAACATTGTCGGAGAACACCTCCGCAAGATTGGAGACCTCAAATCAATTTCTGAAATTACAGAGGAAGAAGCCAGGAAGCAGGATAGACTAGTAACTAATCTTAACAACATCATTGAGGTCAAGTACAAAGACTTGGAAGAGATGGAGCTGAAATGTAGTGAAACTACAAATTCCATTAAGAGCGTAATCACAGAGAAAGAAAAGATCGTTCAGACTTATAATGAAGAGATTAAAAAGATACAAACAAGTGCTCGGGATCACTTTCAGAGGATTTTTGGCGACCATGAAAAACTGAAGTTGCAACTCGAAACTCAAAAGAAAGAGCTAGAGTCCCGCATAGAAGAAATGGAGAAGCGTGCGGTTGCCAACGAAGATGAAAGTAGGAAGCTTGCTGAGGAGATTGAAAAGAATTCCATTAAAAATAGTTCCCTTCACTTGGCTTCTATGGAGCAACTGAAGGCTAATGCAAATTTATTGAAACTGGCCGAAGATCAAAAGGCAAAAGGAACAGCTCCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010569 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046686 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1902679 GO:1903506 GO:1903507 GO:1905348 GO:1990904 GO:2000112 GO:2000113 GO:2000779 GO:2001020 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XH XS zf-XS

Protein Analysis

405

Amino Acids

46.11

Weight (kDa)

5.73

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48670 AT3G48670 AT3G48670 AT4G01780
fragaria_vesca	FvH4_7g22690 FvH4_7g22690
malus_domestica	MD01G1135500.v1.1 MD07G1200200.v1.1
prunus_persica	Prupe.2G236900_v2.0.a1 Prupe.2G236900_v2.0.a1
pyrus_communis	pycom01g15620 pycom07g18700
rosa_chinensis	RchiOBHm_Chr1g0367771
rosa_laevigata	RLG00000027264
rosa_multiflora	Rmu_ssc0000395.1_g000021
rosa_roxburghii	Rroxscaffold_4G00289230 Rroxscaffold_4G00289250
rosa_rugosa	Rorug01G0336500
rosa_samantha	Rh1AG343700 Rh1BG305600 Rh1CG321200 Rh1DG337800
rosa_wichuraiana	Rw1G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AccI	GTMKAC	1 cut(s)	600
AciI	CCGC	4 cut(s)	166, 715, 1027, 1052
AclWI	GGATC	2 cut(s)	448, 957
AcoI	YGGCCR	1 cut(s)	1176
AcsI	RAATTY	3 cut(s)	862, 1102, 1162
AcuI	CTGAAG	7 cut(s)	48, 113, 207, 318, 345, 1007, 1169
AfaI	GTAC	2 cut(s)	220, 818
AfiI	CCNNNNNNNGG	3 cut(s)	377, 417, 1129
AflII	CTTAAG	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	478, 1097, 1171
AhlI	ACTAGT	1 cut(s)	781
AjnI	CCWGG	4 cut(s)	348, 556, 659, 764
Alw21I	GWGCWC	2 cut(s)	495, 946
Alw26I	GTCTC	1 cut(s)	720
Alw44I	GTGCAC	1 cut(s)	491
AlwI	GGATC	2 cut(s)	448, 957
Ama87I	CYCGRG	2 cut(s)	151, 945
AoxI	GGCC	4 cut(s)	368, 408, 554, 1176
ApaLI	GTGCAC	1 cut(s)	491
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	3 cut(s)	862, 1102, 1162
AspS9I	GGNCC	2 cut(s)	305, 408
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	2 cut(s)	151, 945
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	495
Bbv12I	GWGCWC	2 cut(s)	495, 946
BbvCI	CCTCAGC	1 cut(s)	1086
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	5 cut(s)	119, 316, 410, 612, 829
BceAI	ACGGC	1 cut(s)	515
BciT130I	CCWGG	4 cut(s)	350, 558, 661, 766
BcoDI	GTCTC	1 cut(s)	720
BcuI	ACTAGT	1 cut(s)	781
BfaI	CTAG	3 cut(s)	290, 782, 1019
BfrI	CTTAAG	1 cut(s)	484
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	4 cut(s)	350, 558, 661, 766
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	2 cut(s)	151, 945
BmgT120I	GGNCC	2 cut(s)	305, 408
BmrFI	CCNGG	4 cut(s)	350, 558, 661, 766
BmrI	ACTGGG	1 cut(s)	631
BmuI	ACTGGG	1 cut(s)	631
BplI	GAGNNNNNCTC	2 cut(s)	696, 728
Bpu10I	CCTNAGC	1 cut(s)	1086
BpuEI	CTTGAG	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	371, 660
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 417, 1129
Bse1I	ACTGG	3 cut(s)	63, 626, 1179
BseBI	CCWGG	4 cut(s)	350, 558, 661, 766
BseDI	CCNNGG	2 cut(s)	371, 660
BseGI	GGATG	2 cut(s)	67, 358
BseLI	CCNNNNNNNGG	3 cut(s)	377, 417, 1129
BseMII	CTCAG	4 cut(s)	135, 440, 534, 1077
BseNI	ACTGG	3 cut(s)	63, 626, 1179
BseRI	GAGGAG	2 cut(s)	80, 1103
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	4 cut(s)	370, 410, 556, 1178
BsiHKAI	GWGCWC	2 cut(s)	495, 946
BsiHKCI	CYCGRG	2 cut(s)	151, 945
BslFI	GGGAC	1 cut(s)	1009
BslI	CCNNNNNNNGG	3 cut(s)	377, 417, 1129
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	1 cut(s)	1009
BsnI	GGCC	4 cut(s)	370, 410, 556, 1178
Bso31I	GGTCTC	1 cut(s)	720
BsoBI	CYCGRG	2 cut(s)	151, 945
Bsp1286I	GDGCHC	2 cut(s)	495, 946
Bsp143I	GATC	5 cut(s)	16, 440, 897, 949, 1183
BspACI	CCGC	4 cut(s)	166, 715, 1027, 1052
BspANI	GGCC	4 cut(s)	370, 410, 556, 1178
BspCNI	CTCAG	4 cut(s)	134, 441, 533, 1078
BspPI	GGATC	2 cut(s)	448, 957
BspQI	GCTCTTC	1 cut(s)	81
BspTI	CTTAAG	1 cut(s)	484
BspTNI	GGTCTC	1 cut(s)	720
BsrI	ACTGG	3 cut(s)	63, 626, 1179
BssECI	CCNNGG	2 cut(s)	371, 660
BssMI	GATC	5 cut(s)	16, 440, 897, 949, 1183
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	4 cut(s)	350, 558, 661, 766
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	3 cut(s)	81, 825, 912
BstAFI	CTTAAG	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	1050, 1083
BstDEI	CTNAG	5 cut(s)	121, 259, 449, 520, 1086
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	67, 358
BstKTI	GATC	5 cut(s)	19, 443, 900, 952, 1186
BstMAI	GTCTC	1 cut(s)	720
BstMBI	GATC	5 cut(s)	16, 440, 897, 949, 1183
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 665
BstNI	CCWGG	4 cut(s)	350, 558, 661, 766
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	4 cut(s)	348, 556, 659, 764
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	647
BsuRI	GGCC	4 cut(s)	370, 410, 556, 1178
BtsCI	GGATG	2 cut(s)	67, 358
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	1050, 1083
Cfr13I	GGNCC	2 cut(s)	305, 408
Csp6I	GTAC	2 cut(s)	219, 817
CviAII	CATG	4 cut(s)	197, 574, 608, 977
CviQI	GTAC	2 cut(s)	219, 817
DdeI	CTNAG	5 cut(s)	121, 259, 449, 520, 1086
DpnI	GATC	5 cut(s)	18, 442, 899, 951, 1185
DpnII	GATC	5 cut(s)	16, 440, 897, 949, 1183
EaeI	YGGCCR	1 cut(s)	1176
Eam1104I	CTCTTC	3 cut(s)	81, 825, 912
EarI	CTCTTC	3 cut(s)	81, 825, 912
Eco130I	CCWWGG	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	7 cut(s)	48, 113, 207, 318, 345, 1007, 1169
Eco88I	CYCGRG	2 cut(s)	151, 945
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	1102
EcoRII	CCWGG	4 cut(s)	348, 556, 659, 764
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	4 cut(s)	200, 577, 611, 980
FaqI	GGGAC	1 cut(s)	1009
FatI	CATG	4 cut(s)	196, 573, 607, 976
FauI	CCCGC	2 cut(s)	159, 1034
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	2 cut(s)	74, 365
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	3 cut(s)	290, 782, 1019
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	4 cut(s)	370, 410, 556, 1178
Hin1II	CATG	4 cut(s)	200, 577, 611, 980
HindIII	AAGCTT	2 cut(s)	687, 1079
HinfI	GANTC	2 cut(s)	474, 1022
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	493, 601
Hpy188I	TCNGA	9 cut(s)	28, 124, 226, 431, 676, 704, 745, 906, 960
Hpy188III	TCNNGA	3 cut(s)	522, 648, 947
Hpy8I	GTNNAC	2 cut(s)	493, 601
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	293, 580, 1133, 1144
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	3 cut(s)	493, 994, 1160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 665
HpyF3I	CTNAG	5 cut(s)	121, 259, 449, 520, 1086
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	4 cut(s)	200, 577, 611, 980
Kzo9I	GATC	5 cut(s)	16, 440, 897, 949, 1183
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	4 cut(s)	6, 838, 1141, 1210
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	3 cut(s)	290, 782, 1019
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	4 cut(s)	344, 515, 635, 784
MalI	GATC	5 cut(s)	18, 442, 899, 951, 1185
MboI	GATC	5 cut(s)	16, 440, 897, 949, 1183
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	2 cut(s)	495, 946
MluCI	AATT	7 cut(s)	336, 505, 738, 747, 862, 1102, 1162
MlyI	GAGTC	1 cut(s)	1031
MmeI	TCCRAC	5 cut(s)	217, 409, 422, 682, 717
MseI	TTAA	7 cut(s)	390, 485, 567, 795, 870, 924, 1110
MspA1I	CMGCKG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	484
MspR9I	CCNGG	4 cut(s)	350, 558, 661, 766
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	4 cut(s)	350, 558, 661, 766
MwoI	GCNNNNNNNGC	2 cut(s)	147, 665
NdeII	GATC	5 cut(s)	16, 440, 897, 949, 1183
NlaIII	CATG	4 cut(s)	200, 577, 611, 980
NmuCI	GTSAC	3 cut(s)	344, 515, 635
NspI	RCATGY	1 cut(s)	200
PciSI	GCTCTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	474
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	1030
PpsI	GAGTC	1 cut(s)	1030
PsiI	TTATAA	1 cut(s)	912
Psp6I	CCWGG	4 cut(s)	348, 556, 659, 764
PspGI	CCWGG	4 cut(s)	348, 556, 659, 764
PspPI	GGNCC	2 cut(s)	305, 408
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	2 cut(s)	220, 818
RsaNI	GTAC	2 cut(s)	219, 817
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	7 cut(s)	390, 485, 567, 795, 870, 924, 1110
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	5 cut(s)	16, 440, 897, 949, 1183
Sau96I	GGNCC	2 cut(s)	305, 408
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	1 cut(s)	1031
ScrFI	CCNGG	4 cut(s)	350, 558, 661, 766
SduI	GDGCHC	2 cut(s)	495, 946
SinI	GGWCC	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	179, 484
SmoI	CTYRAG	2 cut(s)	179, 484
SpeI	ACTAGT	1 cut(s)	781
Sse9I	AATT	7 cut(s)	336, 505, 738, 747, 862, 1102, 1162
SsiI	CCGC	4 cut(s)	166, 715, 1027, 1052
SspI	AATATT	3 cut(s)	80, 275, 394
SspMI	CTAG	3 cut(s)	290, 782, 1019
StyD4I	CCNGG	4 cut(s)	348, 556, 659, 764
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	443, 999
TasI	AATT	7 cut(s)	336, 505, 738, 747, 862, 1102, 1162
TatI	WGTACW	2 cut(s)	218, 816
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	7 cut(s)	390, 485, 567, 795, 870, 924, 1110
Tru9I	TTAA	7 cut(s)	390, 485, 567, 795, 870, 924, 1110
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	3 cut(s)	344, 515, 635
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	3 cut(s)	344, 515, 635
TspDTI	ATGAA	5 cut(s)	99, 369, 930, 993, 1083
TspGWI	ACGGA	1 cut(s)	53
TspRI	CASTG	1 cut(s)	115
Vha464I	CTTAAG	1 cut(s)	484
VneI	GTGCAC	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	3 cut(s)	862, 1102, 1162
XceI	RCATGY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	600
XspI	CTAG	3 cut(s)	290, 782, 1019
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.