XH domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48670 AT3G48670 AT3G48670 AT4G01780 |
| fragaria_vesca | FvH4_7g22690 FvH4_7g22690 |
| malus_domestica | MD01G1135500.v1.1 MD07G1200200.v1.1 |
| prunus_persica | Prupe.2G236900_v2.0.a1 Prupe.2G236900_v2.0.a1 |
| pyrus_communis | pycom01g15620 pycom07g18700 |
| rosa_chinensis | RchiOBHm_Chr1g0367771 |
| rosa_laevigata | RLG00000027264 |
| rosa_multiflora | Rmu_ssc0000395.1_g000021 |
| rosa_roxburghii | Rroxscaffold_4G00289230 Rroxscaffold_4G00289250 |
| rosa_rugosa | Rorug01G0336500 |
| rosa_samantha | Rh1AG343700 Rh1BG305600 Rh1CG321200 Rh1DG337800 |
| rosa_wichuraiana | Rw1G030590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 915 |
| Acc36I | ACCTGC | 1 cut(s) | 195 |
| AccII | CGCG | 1 cut(s) | 949 |
| AciI | CCGC | 4 cut(s) | 166, 949, 1055, 1912 |
| AclWI | GGATC | 5 cut(s) | 11, 24, 438, 451, 960 |
| AcsI | RAATTY | 5 cut(s) | 508, 542, 1105, 1165, 1694 |
| AcuI | CTGAAG | 6 cut(s) | 113, 200, 1172, 1203, 1658, 1907 |
| AdeI | CACNNNGTG | 1 cut(s) | 112 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 380 |
| AflII | CTTAAG | 1 cut(s) | 989 |
| AjnI | CCWGG | 2 cut(s) | 559, 767 |
| Alw21I | GWGCWC | 3 cut(s) | 1212, 1510, 1619 |
| Alw26I | GTCTC | 2 cut(s) | 723, 1019 |
| AlwI | GGATC | 5 cut(s) | 11, 24, 438, 451, 960 |
| AoxI | GGCC | 3 cut(s) | 249, 371, 557 |
| ApeKI | GCWGC | 1 cut(s) | 1453 |
| ApoI | RAATTY | 5 cut(s) | 508, 542, 1105, 1165, 1694 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 637, 669 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1855 |
| AspLEI | GCGC | 2 cut(s) | 949, 1311 |
| AspS9I | GGNCC | 3 cut(s) | 184, 305, 1642 |
| AsuHPI | GGTGA | 4 cut(s) | 335, 488, 650, 1544 |
| AvaII | GGWCC | 3 cut(s) | 184, 305, 1642 |
| BamHI | GGATCC | 2 cut(s) | 16, 443 |
| BanII | GRGCYC | 1 cut(s) | 1212 |
| BauI | CACGAG | 1 cut(s) | 672 |
| BbsI | GAAGAC | 2 cut(s) | 336, 1401 |
| Bbv12I | GWGCWC | 3 cut(s) | 1212, 1510, 1619 |
| BbvCI | CCTCAGC | 1 cut(s) | 1842 |
| BbvI | GCAGC | 1 cut(s) | 1440 |
| BccI | CCATC | 7 cut(s) | 119, 316, 413, 832, 1316, 1673, 1909 |
| BceAI | ACGGC | 1 cut(s) | 518 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1445, 1479 |
| BciT130I | CCWGG | 2 cut(s) | 561, 769 |
| BciVI | GTATCC | 1 cut(s) | 1240 |
| BcoDI | GTCTC | 2 cut(s) | 723, 1019 |
| BfaI | CTAG | 3 cut(s) | 290, 1022, 1803 |
| BfmI | CTRYAG | 2 cut(s) | 1454, 1671 |
| BfrI | CTTAAG | 1 cut(s) | 989 |
| BfuAI | ACCTGC | 1 cut(s) | 195 |
| BfuI | GTATCC | 1 cut(s) | 1240 |
| BglII | AGATCT | 2 cut(s) | 88, 286 |
| BisI | GCNGC | 1 cut(s) | 1454 |
| BlsI | GCNGC | 1 cut(s) | 1455 |
| Bme1390I | CCNGG | 2 cut(s) | 561, 769 |
| Bme18I | GGWCC | 3 cut(s) | 184, 305, 1642 |
| BmgT120I | GGNCC | 3 cut(s) | 184, 305, 1642 |
| BmiI | GGNNCC | 3 cut(s) | 18, 445, 1644 |
| BmrFI | CCNGG | 2 cut(s) | 561, 769 |
| BmrI | ACTGGG | 2 cut(s) | 634, 1751 |
| BmsI | GCATC | 1 cut(s) | 1663 |
| BmuI | ACTGGG | 2 cut(s) | 634, 1751 |
| BpiI | GAAGAC | 2 cut(s) | 336, 1401 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 699, 731, 1601, 1633 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1842 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1653 |
| BsaI | GGTCTC | 1 cut(s) | 723 |
| BsaJI | CCNNGG | 1 cut(s) | 374 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 380 |
| Bse1I | ACTGG | 5 cut(s) | 629, 1182, 1236, 1248, 1746 |
| Bse3DI | GCAATG | 3 cut(s) | 1450, 1569, 1898 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1653 |
| BseBI | CCWGG | 2 cut(s) | 561, 769 |
| BseDI | CCNNGG | 1 cut(s) | 374 |
| BseGI | GGATG | 7 cut(s) | 67, 73, 1324, 1333, 1654, 1753, 1920 |
| BseJI | GATNNNNATC | 1 cut(s) | 1653 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 380 |
| BseMI | GCAATG | 3 cut(s) | 1450, 1569, 1898 |
| BseMII | CTCAG | 5 cut(s) | 135, 273, 443, 537, 1833 |
| BseNI | ACTGG | 5 cut(s) | 629, 1182, 1236, 1248, 1746 |
| BseRI | GAGGAG | 1 cut(s) | 1220 |
| BseXI | GCAGC | 1 cut(s) | 1440 |
| BsgI | GTGCAG | 1 cut(s) | 696 |
| Bsh1236I | CGCG | 1 cut(s) | 949 |
| BshFI | GGCC | 3 cut(s) | 251, 373, 559 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1212, 1510, 1619 |
| BslFI | GGGAC | 2 cut(s) | 142, 1860 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 380 |
| BsmAI | GTCTC | 2 cut(s) | 723, 1019 |
| BsmFI | GGGAC | 2 cut(s) | 142, 1860 |
| BsnI | GGCC | 3 cut(s) | 251, 373, 559 |
| Bso31I | GGTCTC | 1 cut(s) | 723 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1212, 1510, 1619 |
| Bsp143I | GATC | 7 cut(s) | 16, 88, 286, 443, 604, 952, 1186 |
| BspACI | CCGC | 4 cut(s) | 166, 949, 1055, 1912 |
| BspANI | GGCC | 3 cut(s) | 251, 373, 559 |
| BspCNI | CTCAG | 5 cut(s) | 134, 272, 444, 536, 1834 |
| BspFNI | CGCG | 1 cut(s) | 949 |
| BspLI | GGNNCC | 3 cut(s) | 18, 445, 1644 |
| BspMAI | CTGCAG | 1 cut(s) | 1458 |
| BspMI | ACCTGC | 1 cut(s) | 195 |
| BspPI | GGATC | 5 cut(s) | 11, 24, 438, 451, 960 |
| BspTI | CTTAAG | 1 cut(s) | 989 |
| BspTNI | GGTCTC | 1 cut(s) | 723 |
| BsrDI | GCAATG | 3 cut(s) | 1450, 1569, 1898 |
| BsrI | ACTGG | 5 cut(s) | 629, 1182, 1236, 1248, 1746 |
| BssECI | CCNNGG | 1 cut(s) | 374 |
| BssMI | GATC | 7 cut(s) | 16, 88, 286, 443, 604, 952, 1186 |
| BssSI | CACGAG | 1 cut(s) | 672 |
| BssT1I | CCWWGG | 1 cut(s) | 374 |
| Bst2BI | CACGAG | 1 cut(s) | 672 |
| Bst2UI | CCWGG | 2 cut(s) | 561, 769 |
| Bst4CI | ACNGT | 5 cut(s) | 110, 1217, 1544, 1675, 1830 |
| Bst6I | CTCTTC | 4 cut(s) | 828, 1187, 1562, 1590 |
| BstAFI | CTTAAG | 1 cut(s) | 989 |
| BstC8I | GCNNGC | 2 cut(s) | 1053, 1086 |
| BstDEI | CTNAG | 7 cut(s) | 121, 259, 452, 523, 1283, 1399, 1842 |
| BstEII | GGTNACC | 1 cut(s) | 638 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 378 |
| BstF5I | GGATG | 7 cut(s) | 67, 73, 1324, 1333, 1654, 1753, 1920 |
| BstFNI | CGCG | 1 cut(s) | 949 |
| BstHHI | GCGC | 2 cut(s) | 949, 1311 |
| BstKTI | GATC | 7 cut(s) | 19, 91, 289, 446, 607, 955, 1189 |
| BstMAI | GTCTC | 2 cut(s) | 723, 1019 |
| BstMBI | GATC | 7 cut(s) | 16, 88, 286, 443, 604, 952, 1186 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 147, 599, 668, 781 |
| BstNI | CCWGG | 2 cut(s) | 561, 769 |
| BstNSI | RCATGY | 1 cut(s) | 200 |
| BstPI | GGTNACC | 1 cut(s) | 638 |
| BstSCI | CCNGG | 2 cut(s) | 559, 767 |
| BstSFI | CTRYAG | 2 cut(s) | 1454, 1671 |
| BstUI | CGCG | 1 cut(s) | 949 |
| BstV1I | GCAGC | 1 cut(s) | 1440 |
| BstV2I | GAAGAC | 2 cut(s) | 336, 1401 |
| BstX2I | RGATCY | 4 cut(s) | 16, 88, 286, 443 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 650 |
| BstYI | RGATCY | 4 cut(s) | 16, 88, 286, 443 |
| BsuI | GTATCC | 1 cut(s) | 1240 |
| BsuRI | GGCC | 3 cut(s) | 251, 373, 559 |
| BtsCI | GGATG | 7 cut(s) | 67, 73, 1324, 1333, 1654, 1753, 1920 |
| BtsI | GCAGTG | 1 cut(s) | 1859 |
| BtsIMutI | CAGTG | 2 cut(s) | 115, 1859 |
| BveI | ACCTGC | 1 cut(s) | 195 |
| Cac8I | GCNNGC | 2 cut(s) | 1053, 1086 |
| CfoI | GCGC | 2 cut(s) | 949, 1311 |
| Cfr13I | GGNCC | 3 cut(s) | 184, 305, 1642 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1786, 1821 |
| CviAII | CATG | 6 cut(s) | 197, 353, 577, 611, 829, 1312 |
| DdeI | CTNAG | 7 cut(s) | 121, 259, 452, 523, 1283, 1399, 1842 |
| DpnI | GATC | 7 cut(s) | 18, 90, 288, 445, 606, 954, 1188 |
| DpnII | GATC | 7 cut(s) | 16, 88, 286, 443, 604, 952, 1186 |
| DraI | TTTAAA | 3 cut(s) | 465, 1410, 1779 |
| DraIII | CACNNNGTG | 1 cut(s) | 112 |
| Eam1104I | CTCTTC | 4 cut(s) | 828, 1187, 1562, 1590 |
| EarI | CTCTTC | 4 cut(s) | 828, 1187, 1562, 1590 |
| Ecl136II | GAGCTC | 1 cut(s) | 1210 |
| Eco130I | CCWWGG | 1 cut(s) | 374 |
| Eco24I | GRGCYC | 1 cut(s) | 1212 |
| Eco31I | GGTCTC | 1 cut(s) | 723 |
| Eco47I | GGWCC | 3 cut(s) | 184, 305, 1642 |
| Eco53kI | GAGCTC | 1 cut(s) | 1210 |
| Eco57I | CTGAAG | 6 cut(s) | 113, 200, 1172, 1203, 1658, 1907 |
| Eco91I | GGTNACC | 1 cut(s) | 638 |
| EcoICRI | GAGCTC | 1 cut(s) | 1210 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 378 |
| EcoO109I | RGGNCCY | 2 cut(s) | 184, 1642 |
| EcoO65I | GGTNACC | 1 cut(s) | 638 |
| EcoRI | GAATTC | 2 cut(s) | 1105, 1694 |
| EcoRII | CCWGG | 2 cut(s) | 559, 767 |
| EcoT14I | CCWWGG | 1 cut(s) | 374 |
| EcoT38I | GRGCYC | 1 cut(s) | 1212 |
| ErhI | CCWWGG | 1 cut(s) | 374 |
| FaeI | CATG | 6 cut(s) | 200, 356, 580, 614, 832, 1315 |
| FaqI | GGGAC | 2 cut(s) | 142, 1860 |
| FatI | CATG | 6 cut(s) | 196, 352, 576, 610, 828, 1311 |
| FauI | CCCGC | 2 cut(s) | 159, 942 |
| Fnu4HI | GCNGC | 1 cut(s) | 1454 |
| FokI | GGATG | 6 cut(s) | 74, 80, 1331, 1340, 1641, 1760 |
| FriOI | GRGCYC | 1 cut(s) | 1212 |
| Fsp4HI | GCNGC | 1 cut(s) | 1454 |
| FspBI | CTAG | 3 cut(s) | 290, 1022, 1803 |
| GlaI | GCGC | 2 cut(s) | 948, 1310 |
| GluI | GCNGC | 1 cut(s) | 1454 |
| HaeIII | GGCC | 3 cut(s) | 251, 373, 559 |
| HhaI | GCGC | 2 cut(s) | 949, 1311 |
| Hin1II | CATG | 6 cut(s) | 200, 356, 580, 614, 832, 1315 |
| Hin6I | GCGC | 2 cut(s) | 947, 1309 |
| HinP1I | GCGC | 2 cut(s) | 947, 1309 |
| HincII | GTYRAC | 1 cut(s) | 1876 |
| HindII | GTYRAC | 1 cut(s) | 1876 |
| HindIII | AAGCTT | 2 cut(s) | 782, 1404 |
| HphI | GGTGA | 4 cut(s) | 335, 488, 650, 1544 |
| Hpy166II | GTNNAC | 4 cut(s) | 496, 1351, 1547, 1876 |
| Hpy188III | TCNNGA | 2 cut(s) | 525, 1262 |
| Hpy8I | GTNNAC | 4 cut(s) | 496, 1351, 1547, 1876 |
| HpyAV | CCTTC | 9 cut(s) | 154, 175, 293, 1147, 1483, 1561, 1633, 1845, 1862 |
| HpyCH4III | ACNGT | 5 cut(s) | 110, 1217, 1544, 1675, 1830 |
| HpyCH4V | TGCA | 4 cut(s) | 677, 1129, 1456, 1864 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 147, 599, 668, 781 |
| HpyF3I | CTNAG | 7 cut(s) | 121, 259, 452, 523, 1283, 1399, 1842 |
| Hsp92II | CATG | 6 cut(s) | 200, 356, 580, 614, 832, 1315 |
| HspAI | GCGC | 2 cut(s) | 947, 1309 |
| Kzo9I | GATC | 7 cut(s) | 16, 88, 286, 443, 604, 952, 1186 |
| LmnI | GCTCC | 6 cut(s) | 195, 841, 1144, 1207, 1215, 1432 |
| Lsp1109I | GCAGC | 1 cut(s) | 1440 |
| LweI | GCATC | 1 cut(s) | 1663 |
| MaeI | CTAG | 3 cut(s) | 290, 1022, 1803 |
| MaeIII | GTNAC | 7 cut(s) | 47, 347, 518, 638, 993, 1666, 1765 |
| MalI | GATC | 7 cut(s) | 18, 90, 288, 445, 606, 954, 1188 |
| MboI | GATC | 7 cut(s) | 16, 88, 286, 443, 604, 952, 1186 |
| MfeI | CAATTG | 3 cut(s) | 339, 998, 1130 |
| MflI | RGATCY | 4 cut(s) | 16, 88, 286, 443 |
| MhlI | GDGCHC | 3 cut(s) | 1212, 1510, 1619 |
| MmeI | TCCRAC | 3 cut(s) | 217, 425, 685 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1855 |
| MslI | CAYNNNNRTG | 2 cut(s) | 56, 1515 |
| MspA1I | CMGCKG | 1 cut(s) | 1912 |
| MspCI | CTTAAG | 1 cut(s) | 989 |
| MspR9I | CCNGG | 2 cut(s) | 561, 769 |
| MunI | CAATTG | 3 cut(s) | 339, 998, 1130 |
| MvaI | CCWGG | 2 cut(s) | 561, 769 |
| MvnI | CGCG | 1 cut(s) | 949 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 147, 599, 668, 781 |
| NdeII | GATC | 7 cut(s) | 16, 88, 286, 443, 604, 952, 1186 |
| NlaIII | CATG | 6 cut(s) | 200, 356, 580, 614, 832, 1315 |
| NlaIV | GGNNCC | 3 cut(s) | 18, 445, 1644 |
| NmuCI | GTSAC | 4 cut(s) | 47, 347, 518, 638 |
| NspI | RCATGY | 1 cut(s) | 200 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1855 |
| PkrI | GCNGC | 1 cut(s) | 1455 |
| PpuMI | RGGWCCY | 2 cut(s) | 184, 1642 |
| PsiI | TTATAA | 1 cut(s) | 915 |
| Psp124BI | GAGCTC | 1 cut(s) | 1212 |
| Psp5II | RGGWCCY | 2 cut(s) | 184, 1642 |
| Psp6I | CCWGG | 2 cut(s) | 559, 767 |
| PspEI | GGTNACC | 1 cut(s) | 638 |
| PspGI | CCWGG | 2 cut(s) | 559, 767 |
| PspN4I | GGNNCC | 3 cut(s) | 18, 445, 1644 |
| PspPI | GGNCC | 3 cut(s) | 184, 305, 1642 |
| PspPPI | RGGWCCY | 2 cut(s) | 184, 1642 |
| PstI | CTGCAG | 1 cut(s) | 1458 |
| PsuI | RGATCY | 4 cut(s) | 16, 88, 286, 443 |
| RseI | CAYNNNNRTG | 2 cut(s) | 56, 1515 |
| SacI | GAGCTC | 1 cut(s) | 1212 |
| SatI | GCNGC | 1 cut(s) | 1454 |
| Sau3AI | GATC | 7 cut(s) | 16, 88, 286, 443, 604, 952, 1186 |
| Sau96I | GGNCC | 3 cut(s) | 184, 305, 1642 |
| ScrFI | CCNGG | 2 cut(s) | 561, 769 |
| SduI | GDGCHC | 3 cut(s) | 1212, 1510, 1619 |
| SfaNI | GCATC | 1 cut(s) | 1663 |
| SfcI | CTRYAG | 2 cut(s) | 1454, 1671 |
| SinI | GGWCC | 3 cut(s) | 184, 305, 1642 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 56, 1515 |
| SmlI | CTYRAG | 1 cut(s) | 989 |
| SmoI | CTYRAG | 1 cut(s) | 989 |
| SsiI | CCGC | 4 cut(s) | 166, 949, 1055, 1912 |
| SspI | AATATT | 4 cut(s) | 80, 275, 397, 700 |
| SspMI | CTAG | 3 cut(s) | 290, 1022, 1803 |
| SstI | GAGCTC | 1 cut(s) | 1212 |
| StyD4I | CCNGG | 2 cut(s) | 559, 767 |
| StyI | CCWWGG | 1 cut(s) | 374 |
| TaaI | ACNGT | 5 cut(s) | 110, 1217, 1544, 1675, 1830 |
| TaqI | TCGA | 2 cut(s) | 12, 1677 |
| TscAI | CASTG | 2 cut(s) | 115, 1866 |
| TseFI | GTSAC | 4 cut(s) | 47, 347, 518, 638 |
| TseI | GCWGC | 1 cut(s) | 1453 |
| Tsp45I | GTSAC | 4 cut(s) | 47, 347, 518, 638 |
| TspGWI | ACGGA | 1 cut(s) | 707 |
| TspRI | CASTG | 2 cut(s) | 115, 1866 |
| Vha464I | CTTAAG | 1 cut(s) | 989 |
| VpaK11BI | GGWCC | 3 cut(s) | 184, 305, 1642 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 378 |
| XapI | RAATTY | 5 cut(s) | 508, 542, 1105, 1165, 1694 |
| XceI | RCATGY | 1 cut(s) | 200 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 200 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1855 |
| XspI | CTAG | 3 cut(s) | 290, 1022, 1803 |