Prupe.2G236900_v2.0.a1

XH domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
25813732 .. 25819653
5922 bp
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UTR
Exon/CDS
Intron
Prupe.2G236900.2

Sequence Viewer

Length: 1926 bp
ATGGGGAGTGTCGAGGATCCTATCTTTGAAGATGATACAGATATAAGTGACACAGAAATGGATGAGGATGAAGAAGAATATTATGAAGATCTGAAGAATGGAAAACACAGTGTGAGAAGCTCAGATGGGACATATATTTGCCCCTTCTGCCCAAAGAAGAAAAAGCGGGATTTTGTTCTGAAGGACCTGCTCCAACATGCCTCTGGGGTGGGAAAGAGTAATTCAGAAAAGAGAAGCACAGAAGAAAAGGCCAAACACTCAGCTTTAGCGAAATATTTGGAAAAAGATCTAGCAACCGAAGGTGGTCCATCTAAACCTGTGGGTGAGGAAGACCCCCCAATTGATTGTGACCATGATGAAAAGTTAGTGTGGCCTTGGACAGGGGTAGTGGTTAATATTCCAACCAGACGGGCAGACGATGGGAGATATGTAGGAGAAAGTGGATCCAAACTGAGAGATGATTTAAAAAGGAGAGGGTTCAATCCCACAAGGGTTCACCCTCTATGGAATTTTCGGGGTCACTCAGGAAGTGCCGTTGTGGAATTTAGGAAAGATTGGCCTGGCTATGTTAATGCCATGTCATTTGAGAGGGCTTATGAGGCAGATCGTCATGGGAAAAAGGACTGGGGTGCTAATGGTGACCAAAAATCTGGTCTTTATGCTTGGGTTGCTCGTGCAGATGACTATAAAGCTACCAATATTGTTGGAGAACACCTCCGTAAGATTGGAGACCTTAAAACAATTTCTGAAATTATGGAGGAAGAAGCCAGGAAGCAGGATAAGCTTGTATTTAATCTTAACAACATCATTCAGGGCAAGAACAAGGACATGGAAGAGATGGAGCTAAAATGTAGTGAAACTACAAACTCCATTAAGAGCGTAATCACAGAGAAAGAAAAGCTCGTTCAAGGTTATAATGAAGATATAAAAAAGATACAAATGAGTGCGCGGGATCACTTTCAGAGGATTTTTAGCGACCACGAAAAACTTAAGTTACAATTGGAAACTCAAAAGATAGGGCTAGAGACACGCATAGAAGAAATGGAGAAGCGTGCGGTGGCTAATGAAAGTGAAAGTAGGAAGCTCGCCGATGAAATTGAAAAGAATTCGGCAAAAAATAGTTCTCTGCAATTGGCTTCTATGGAGCAACTGAAGGCTAATGAAAATTTATTGAAACTGGCTGAAGATCAGAAGAGGCAAAAGGAGGAGCTCCACAGTAAAATAATTAAACTGGAAAAGCAACTGGATACAAAGCAAACTCTTGAATTGGAAATTGAGCAACTTAGAGGGAACTTAAATGTTGTAAGGCGCATGGGGGATGATGGGGATGTTGAAGTGCTGGAAAAGGTGGACACAATGCTCAAAGAATTGAGAGAAAAGGAAGAAACATTTGAAGACTTAGAAGCTTTAAATCAAACTCTAATTGTAAAGGAGCGTAAGAGCAATGATGAGCTGCAGGAAGCTCGTAAGGAATTGGTTAATGGCTTGAAGGAAATATCAAATCGTGCTCATATTGGTGTTAAGAGAATGGGTGAGCTTGACAGTAAACCCTTCCAAGAAGCAATGAAGAGAAAGTATAATGAGGAAGAAGCAGAAGAGAAAGCCACAGAGCTGTGCTCATTGTGGGAAGAATACCTGAAGGACCCAGATTGGCATCCTTTCAGAGTTACTACAGTCGATGGGCAACATAAGGAATTCATAAATGAACAAGATGAAAAATTGAAAGATTTGAAGAAACAACTGGGGGATGAGGTGTATAATGCTGTAACATCAGCTTTAAAGGAGATAAATGAATACAACCCTAGTGGGAGGTATATAACTTCTGAACTGTGGAACTATGCTGAGGGACGAAGGGCTTCACTGCAAGAAGGAGTTGACTTTATTCTGAAGCAATGGAAACAAAAGAAACAGCGGATGGAAGATTGA

Protein Analysis

642

Amino Acids

74.2

Weight (kDa)

5.29

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
Acc36I ACCTGC 1 cut(s) 195
AccII CGCG 1 cut(s) 949
AciI CCGC 4 cut(s) 166, 949, 1055, 1912
AclWI GGATC 5 cut(s) 11, 24, 438, 451, 960
AcsI RAATTY 5 cut(s) 508, 542, 1105, 1165, 1694
AcuI CTGAAG 6 cut(s) 113, 200, 1172, 1203, 1658, 1907
AdeI CACNNNGTG 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 380
AflII CTTAAG 1 cut(s) 989
AjnI CCWGG 2 cut(s) 559, 767
Alw21I GWGCWC 3 cut(s) 1212, 1510, 1619
Alw26I GTCTC 2 cut(s) 723, 1019
AlwI GGATC 5 cut(s) 11, 24, 438, 451, 960
AoxI GGCC 3 cut(s) 249, 371, 557
ApeKI GCWGC 1 cut(s) 1453
ApoI RAATTY 5 cut(s) 508, 542, 1105, 1165, 1694
ArsI GACNNNNNNTTYG 2 cut(s) 637, 669
Asp700I GAANNNNTTC 1 cut(s) 1855
AspLEI GCGC 2 cut(s) 949, 1311
AspS9I GGNCC 3 cut(s) 184, 305, 1642
AsuHPI GGTGA 4 cut(s) 335, 488, 650, 1544
AvaII GGWCC 3 cut(s) 184, 305, 1642
BamHI GGATCC 2 cut(s) 16, 443
BanII GRGCYC 1 cut(s) 1212
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 2 cut(s) 336, 1401
Bbv12I GWGCWC 3 cut(s) 1212, 1510, 1619
BbvCI CCTCAGC 1 cut(s) 1842
BbvI GCAGC 1 cut(s) 1440
BccI CCATC 7 cut(s) 119, 316, 413, 832, 1316, 1673, 1909
BceAI ACGGC 1 cut(s) 518
BcgI CGANNNNNNTGC 2 cut(s) 1445, 1479
BciT130I CCWGG 2 cut(s) 561, 769
BciVI GTATCC 1 cut(s) 1240
BcoDI GTCTC 2 cut(s) 723, 1019
BfaI CTAG 3 cut(s) 290, 1022, 1803
BfmI CTRYAG 2 cut(s) 1454, 1671
BfrI CTTAAG 1 cut(s) 989
BfuAI ACCTGC 1 cut(s) 195
BfuI GTATCC 1 cut(s) 1240
BglII AGATCT 2 cut(s) 88, 286
BisI GCNGC 1 cut(s) 1454
BlsI GCNGC 1 cut(s) 1455
Bme1390I CCNGG 2 cut(s) 561, 769
Bme18I GGWCC 3 cut(s) 184, 305, 1642
BmgT120I GGNCC 3 cut(s) 184, 305, 1642
BmiI GGNNCC 3 cut(s) 18, 445, 1644
BmrFI CCNGG 2 cut(s) 561, 769
BmrI ACTGGG 2 cut(s) 634, 1751
BmsI GCATC 1 cut(s) 1663
BmuI ACTGGG 2 cut(s) 634, 1751
BpiI GAAGAC 2 cut(s) 336, 1401
BplI GAGNNNNNCTC 4 cut(s) 699, 731, 1601, 1633
Bpu10I CCTNAGC 1 cut(s) 1842
BsaBI GATNNNNATC 1 cut(s) 1653
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 5 cut(s) 629, 1182, 1236, 1248, 1746
Bse3DI GCAATG 3 cut(s) 1450, 1569, 1898
Bse8I GATNNNNATC 1 cut(s) 1653
BseBI CCWGG 2 cut(s) 561, 769
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 7 cut(s) 67, 73, 1324, 1333, 1654, 1753, 1920
BseJI GATNNNNATC 1 cut(s) 1653
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 3 cut(s) 1450, 1569, 1898
BseMII CTCAG 5 cut(s) 135, 273, 443, 537, 1833
BseNI ACTGG 5 cut(s) 629, 1182, 1236, 1248, 1746
BseRI GAGGAG 1 cut(s) 1220
BseXI GCAGC 1 cut(s) 1440
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 949
BshFI GGCC 3 cut(s) 251, 373, 559
BsiHKAI GWGCWC 3 cut(s) 1212, 1510, 1619
BslFI GGGAC 2 cut(s) 142, 1860
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 2 cut(s) 723, 1019
BsmFI GGGAC 2 cut(s) 142, 1860
BsnI GGCC 3 cut(s) 251, 373, 559
Bso31I GGTCTC 1 cut(s) 723
Bsp1286I GDGCHC 3 cut(s) 1212, 1510, 1619
Bsp143I GATC 7 cut(s) 16, 88, 286, 443, 604, 952, 1186
BspACI CCGC 4 cut(s) 166, 949, 1055, 1912
BspANI GGCC 3 cut(s) 251, 373, 559
BspCNI CTCAG 5 cut(s) 134, 272, 444, 536, 1834
BspFNI CGCG 1 cut(s) 949
BspLI GGNNCC 3 cut(s) 18, 445, 1644
BspMAI CTGCAG 1 cut(s) 1458
BspMI ACCTGC 1 cut(s) 195
BspPI GGATC 5 cut(s) 11, 24, 438, 451, 960
BspTI CTTAAG 1 cut(s) 989
BspTNI GGTCTC 1 cut(s) 723
BsrDI GCAATG 3 cut(s) 1450, 1569, 1898
BsrI ACTGG 5 cut(s) 629, 1182, 1236, 1248, 1746
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 7 cut(s) 16, 88, 286, 443, 604, 952, 1186
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 1 cut(s) 374
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 2 cut(s) 561, 769
Bst4CI ACNGT 5 cut(s) 110, 1217, 1544, 1675, 1830
Bst6I CTCTTC 4 cut(s) 828, 1187, 1562, 1590
BstAFI CTTAAG 1 cut(s) 989
BstC8I GCNNGC 2 cut(s) 1053, 1086
BstDEI CTNAG 7 cut(s) 121, 259, 452, 523, 1283, 1399, 1842
BstEII GGTNACC 1 cut(s) 638
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 7 cut(s) 67, 73, 1324, 1333, 1654, 1753, 1920
BstFNI CGCG 1 cut(s) 949
BstHHI GCGC 2 cut(s) 949, 1311
BstKTI GATC 7 cut(s) 19, 91, 289, 446, 607, 955, 1189
BstMAI GTCTC 2 cut(s) 723, 1019
BstMBI GATC 7 cut(s) 16, 88, 286, 443, 604, 952, 1186
BstMWI GCNNNNNNNGC 4 cut(s) 147, 599, 668, 781
BstNI CCWGG 2 cut(s) 561, 769
BstNSI RCATGY 1 cut(s) 200
BstPI GGTNACC 1 cut(s) 638
BstSCI CCNGG 2 cut(s) 559, 767
BstSFI CTRYAG 2 cut(s) 1454, 1671
BstUI CGCG 1 cut(s) 949
BstV1I GCAGC 1 cut(s) 1440
BstV2I GAAGAC 2 cut(s) 336, 1401
BstX2I RGATCY 4 cut(s) 16, 88, 286, 443
BstXI CCANNNNNNTGG 1 cut(s) 650
BstYI RGATCY 4 cut(s) 16, 88, 286, 443
BsuI GTATCC 1 cut(s) 1240
BsuRI GGCC 3 cut(s) 251, 373, 559
BtsCI GGATG 7 cut(s) 67, 73, 1324, 1333, 1654, 1753, 1920
BtsI GCAGTG 1 cut(s) 1859
BtsIMutI CAGTG 2 cut(s) 115, 1859
BveI ACCTGC 1 cut(s) 195
Cac8I GCNNGC 2 cut(s) 1053, 1086
CfoI GCGC 2 cut(s) 949, 1311
Cfr13I GGNCC 3 cut(s) 184, 305, 1642
CspCI CAANNNNNGTGG 2 cut(s) 1786, 1821
CviAII CATG 6 cut(s) 197, 353, 577, 611, 829, 1312
DdeI CTNAG 7 cut(s) 121, 259, 452, 523, 1283, 1399, 1842
DpnI GATC 7 cut(s) 18, 90, 288, 445, 606, 954, 1188
DpnII GATC 7 cut(s) 16, 88, 286, 443, 604, 952, 1186
DraI TTTAAA 3 cut(s) 465, 1410, 1779
DraIII CACNNNGTG 1 cut(s) 112
Eam1104I CTCTTC 4 cut(s) 828, 1187, 1562, 1590
EarI CTCTTC 4 cut(s) 828, 1187, 1562, 1590
Ecl136II GAGCTC 1 cut(s) 1210
Eco130I CCWWGG 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 1212
Eco31I GGTCTC 1 cut(s) 723
Eco47I GGWCC 3 cut(s) 184, 305, 1642
Eco53kI GAGCTC 1 cut(s) 1210
Eco57I CTGAAG 6 cut(s) 113, 200, 1172, 1203, 1658, 1907
Eco91I GGTNACC 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 1210
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoO109I RGGNCCY 2 cut(s) 184, 1642
EcoO65I GGTNACC 1 cut(s) 638
EcoRI GAATTC 2 cut(s) 1105, 1694
EcoRII CCWGG 2 cut(s) 559, 767
EcoT14I CCWWGG 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 1212
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 6 cut(s) 200, 356, 580, 614, 832, 1315
FaqI GGGAC 2 cut(s) 142, 1860
FatI CATG 6 cut(s) 196, 352, 576, 610, 828, 1311
FauI CCCGC 2 cut(s) 159, 942
Fnu4HI GCNGC 1 cut(s) 1454
FokI GGATG 6 cut(s) 74, 80, 1331, 1340, 1641, 1760
FriOI GRGCYC 1 cut(s) 1212
Fsp4HI GCNGC 1 cut(s) 1454
FspBI CTAG 3 cut(s) 290, 1022, 1803
GlaI GCGC 2 cut(s) 948, 1310
GluI GCNGC 1 cut(s) 1454
HaeIII GGCC 3 cut(s) 251, 373, 559
HhaI GCGC 2 cut(s) 949, 1311
Hin1II CATG 6 cut(s) 200, 356, 580, 614, 832, 1315
Hin6I GCGC 2 cut(s) 947, 1309
HinP1I GCGC 2 cut(s) 947, 1309
HincII GTYRAC 1 cut(s) 1876
HindII GTYRAC 1 cut(s) 1876
HindIII AAGCTT 2 cut(s) 782, 1404
HphI GGTGA 4 cut(s) 335, 488, 650, 1544
Hpy166II GTNNAC 4 cut(s) 496, 1351, 1547, 1876
Hpy188III TCNNGA 2 cut(s) 525, 1262
Hpy8I GTNNAC 4 cut(s) 496, 1351, 1547, 1876
HpyAV CCTTC 9 cut(s) 154, 175, 293, 1147, 1483, 1561, 1633, 1845, 1862
HpyCH4III ACNGT 5 cut(s) 110, 1217, 1544, 1675, 1830
HpyCH4V TGCA 4 cut(s) 677, 1129, 1456, 1864
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 599, 668, 781
HpyF3I CTNAG 7 cut(s) 121, 259, 452, 523, 1283, 1399, 1842
Hsp92II CATG 6 cut(s) 200, 356, 580, 614, 832, 1315
HspAI GCGC 2 cut(s) 947, 1309
Kzo9I GATC 7 cut(s) 16, 88, 286, 443, 604, 952, 1186
LmnI GCTCC 6 cut(s) 195, 841, 1144, 1207, 1215, 1432
Lsp1109I GCAGC 1 cut(s) 1440
LweI GCATC 1 cut(s) 1663
MaeI CTAG 3 cut(s) 290, 1022, 1803
MaeIII GTNAC 7 cut(s) 47, 347, 518, 638, 993, 1666, 1765
MalI GATC 7 cut(s) 18, 90, 288, 445, 606, 954, 1188
MboI GATC 7 cut(s) 16, 88, 286, 443, 604, 952, 1186
MfeI CAATTG 3 cut(s) 339, 998, 1130
MflI RGATCY 4 cut(s) 16, 88, 286, 443
MhlI GDGCHC 3 cut(s) 1212, 1510, 1619
MmeI TCCRAC 3 cut(s) 217, 425, 685
MroXI GAANNNNTTC 1 cut(s) 1855
MslI CAYNNNNRTG 2 cut(s) 56, 1515
MspA1I CMGCKG 1 cut(s) 1912
MspCI CTTAAG 1 cut(s) 989
MspR9I CCNGG 2 cut(s) 561, 769
MunI CAATTG 3 cut(s) 339, 998, 1130
MvaI CCWGG 2 cut(s) 561, 769
MvnI CGCG 1 cut(s) 949
MwoI GCNNNNNNNGC 4 cut(s) 147, 599, 668, 781
NdeII GATC 7 cut(s) 16, 88, 286, 443, 604, 952, 1186
NlaIII CATG 6 cut(s) 200, 356, 580, 614, 832, 1315
NlaIV GGNNCC 3 cut(s) 18, 445, 1644
NmuCI GTSAC 4 cut(s) 47, 347, 518, 638
NspI RCATGY 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 1855
PkrI GCNGC 1 cut(s) 1455
PpuMI RGGWCCY 2 cut(s) 184, 1642
PsiI TTATAA 1 cut(s) 915
Psp124BI GAGCTC 1 cut(s) 1212
Psp5II RGGWCCY 2 cut(s) 184, 1642
Psp6I CCWGG 2 cut(s) 559, 767
PspEI GGTNACC 1 cut(s) 638
PspGI CCWGG 2 cut(s) 559, 767
PspN4I GGNNCC 3 cut(s) 18, 445, 1644
PspPI GGNCC 3 cut(s) 184, 305, 1642
PspPPI RGGWCCY 2 cut(s) 184, 1642
PstI CTGCAG 1 cut(s) 1458
PsuI RGATCY 4 cut(s) 16, 88, 286, 443
RseI CAYNNNNRTG 2 cut(s) 56, 1515
SacI GAGCTC 1 cut(s) 1212
SatI GCNGC 1 cut(s) 1454
Sau3AI GATC 7 cut(s) 16, 88, 286, 443, 604, 952, 1186
Sau96I GGNCC 3 cut(s) 184, 305, 1642
ScrFI CCNGG 2 cut(s) 561, 769
SduI GDGCHC 3 cut(s) 1212, 1510, 1619
SfaNI GCATC 1 cut(s) 1663
SfcI CTRYAG 2 cut(s) 1454, 1671
SinI GGWCC 3 cut(s) 184, 305, 1642
SmiMI CAYNNNNRTG 2 cut(s) 56, 1515
SmlI CTYRAG 1 cut(s) 989
SmoI CTYRAG 1 cut(s) 989
SsiI CCGC 4 cut(s) 166, 949, 1055, 1912
SspI AATATT 4 cut(s) 80, 275, 397, 700
SspMI CTAG 3 cut(s) 290, 1022, 1803
SstI GAGCTC 1 cut(s) 1212
StyD4I CCNGG 2 cut(s) 559, 767
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 5 cut(s) 110, 1217, 1544, 1675, 1830
TaqI TCGA 2 cut(s) 12, 1677
TscAI CASTG 2 cut(s) 115, 1866
TseFI GTSAC 4 cut(s) 47, 347, 518, 638
TseI GCWGC 1 cut(s) 1453
Tsp45I GTSAC 4 cut(s) 47, 347, 518, 638
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 2 cut(s) 115, 1866
Vha464I CTTAAG 1 cut(s) 989
VpaK11BI GGWCC 3 cut(s) 184, 305, 1642
XagI CCTNNNNNAGG 1 cut(s) 378
XapI RAATTY 5 cut(s) 508, 542, 1105, 1165, 1694
XceI RCATGY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 1855
XspI CTAG 3 cut(s) 290, 1022, 1803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.