XH domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48670 AT3G48670 AT3G48670 AT4G01780 |
| fragaria_vesca | FvH4_7g22690 FvH4_7g22690 |
| malus_domestica | MD01G1135500.v1.1 MD07G1200200.v1.1 |
| prunus_persica | Prupe.2G236900_v2.0.a1 Prupe.2G236900_v2.0.a1 |
| pyrus_communis | pycom01g15620 pycom07g18700 |
| rosa_chinensis | RchiOBHm_Chr1g0367771 |
| rosa_laevigata | RLG00000027264 |
| rosa_multiflora | Rmu_ssc0000395.1_g000021 |
| rosa_roxburghii | Rroxscaffold_4G00289230 Rroxscaffold_4G00289250 |
| rosa_rugosa | Rorug01G0336500 |
| rosa_samantha | Rh1AG343700 Rh1BG305600 Rh1CG321200 Rh1DG337800 |
| rosa_wichuraiana | Rw1G030590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1314, 2358 |
| Acc36I | ACCTGC | 2 cut(s) | 472, 1818 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 97 |
| AccI | GTMKAC | 1 cut(s) | 2886 |
| AccII | CGCG | 1 cut(s) | 322 |
| AccIII | TCCGGA | 1 cut(s) | 2263 |
| AciI | CCGC | 7 cut(s) | 322, 1606, 1838, 2251, 2789, 3107, 3225 |
| AclWI | GGATC | 7 cut(s) | 757, 1124, 1461, 2203, 2243, 2340, 2710 |
| AcoI | YGGCCR | 5 cut(s) | 469, 978, 1020, 1603, 3104 |
| AcsI | RAATTY | 2 cut(s) | 777, 2428 |
| AcuI | CTGAAG | 1 cut(s) | 2505 |
| AdeI | CACNNNGTG | 1 cut(s) | 82 |
| AflII | CTTAAG | 1 cut(s) | 1142 |
| AflIII | ACRYGT | 1 cut(s) | 1966 |
| AgeI | ACCGGT | 1 cut(s) | 632 |
| AjiI | CACGTC | 1 cut(s) | 508 |
| AjnI | CCWGG | 7 cut(s) | 249, 428, 448, 667, 2163, 2584, 2808 |
| AleI | CACNNNNGTG | 1 cut(s) | 1232 |
| Alw21I | GWGCWC | 4 cut(s) | 1272, 2071, 2461, 2740 |
| Alw26I | GTCTC | 5 cut(s) | 572, 967, 1222, 2546, 2629 |
| Alw44I | GTGCAC | 1 cut(s) | 2736 |
| AlwI | GGATC | 7 cut(s) | 757, 1124, 1461, 2203, 2243, 2340, 2710 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 219, 1637 |
| Ama87I | CYCGRG | 1 cut(s) | 987 |
| Aor13HI | TCCGGA | 1 cut(s) | 2263 |
| AoxI | GGCC | 9 cut(s) | 469, 978, 1020, 1508, 1603, 1954, 2176, 2387, 3104 |
| ApaLI | GTGCAC | 1 cut(s) | 2736 |
| ApoI | RAATTY | 2 cut(s) | 777, 2428 |
| AsiGI | ACCGGT | 1 cut(s) | 632 |
| AspA2I | CCTAGG | 1 cut(s) | 2614 |
| AspLEI | GCGC | 1 cut(s) | 327 |
| AspS9I | GGNCC | 3 cut(s) | 1534, 1625, 2266 |
| AsuC2I | CCSGG | 5 cut(s) | 233, 988, 989, 1304, 1602 |
| AsuHPI | GGTGA | 6 cut(s) | 740, 1212, 1346, 2108, 2935, 3343 |
| AsuII | TTCGAA | 1 cut(s) | 266 |
| AvaI | CYCGRG | 1 cut(s) | 987 |
| AvaII | GGWCC | 3 cut(s) | 1534, 1625, 2266 |
| AvrII | CCTAGG | 1 cut(s) | 2614 |
| AxyI | CCTNAGG | 1 cut(s) | 1891 |
| BaeGI | GKGCMC | 2 cut(s) | 2740, 3232 |
| BalI | TGGCCA | 3 cut(s) | 471, 980, 1022 |
| BanII | GRGCYC | 2 cut(s) | 1272, 1899 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2637, 2669 |
| BbsI | GAAGAC | 1 cut(s) | 2626 |
| Bbv12I | GWGCWC | 4 cut(s) | 1272, 2071, 2461, 2740 |
| BceAI | ACGGC | 2 cut(s) | 3119, 3291 |
| BciT130I | CCWGG | 7 cut(s) | 251, 430, 450, 669, 2165, 2586, 2810 |
| BciVI | GTATCC | 2 cut(s) | 2646, 2872 |
| BclI | TGATCA | 3 cut(s) | 141, 912, 2904 |
| BcnI | CCSGG | 5 cut(s) | 233, 988, 989, 1304, 1602 |
| BcoDI | GTCTC | 5 cut(s) | 572, 967, 1222, 2546, 2629 |
| BfaI | CTAG | 9 cut(s) | 59, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026 |
| BfmI | CTRYAG | 3 cut(s) | 126, 816, 1614 |
| BfoI | RGCGCY | 1 cut(s) | 328 |
| BfrI | CTTAAG | 1 cut(s) | 1142 |
| BfuAI | ACCTGC | 2 cut(s) | 472, 1818 |
| BfuI | GTATCC | 2 cut(s) | 2646, 2872 |
| BglII | AGATCT | 1 cut(s) | 2954 |
| BlnI | CCTAGG | 1 cut(s) | 2614 |
| BlpI | GCTNAGC | 1 cut(s) | 1434 |
| BmcAI | AGTACT | 2 cut(s) | 954, 2160 |
| Bme18I | GGWCC | 3 cut(s) | 1534, 1625, 2266 |
| BmeT110I | CYCGRG | 1 cut(s) | 987 |
| BmgBI | CACGTC | 1 cut(s) | 508 |
| BmgT120I | GGNCC | 3 cut(s) | 1534, 1625, 2266 |
| BmiI | GGNNCC | 6 cut(s) | 248, 1260, 1626, 1898, 1998, 2692 |
| BmrI | ACTGGG | 1 cut(s) | 59 |
| BmsI | GCATC | 8 cut(s) | 844, 1045, 1576, 1673, 2262, 2340, 2533, 2849 |
| BmuI | ACTGGG | 1 cut(s) | 59 |
| BpiI | GAAGAC | 1 cut(s) | 2626 |
| BpmI | CTGGAG | 5 cut(s) | 1883, 1971, 2568, 2709, 3222 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2698, 2874 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1434 |
| Bpu14I | TTCGAA | 1 cut(s) | 266 |
| BpuEI | CTTGAG | 2 cut(s) | 1110, 2209 |
| BpuMI | CCSGG | 5 cut(s) | 233, 988, 989, 1304, 1602 |
| BsaAI | YACGTR | 1 cut(s) | 1910 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1179 |
| BsaI | GGTCTC | 1 cut(s) | 572 |
| BsaWI | WCCGGW | 4 cut(s) | 632, 1165, 2263, 2574 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3256, 3286 |
| Bse118I | RCCGGY | 1 cut(s) | 632 |
| Bse1I | ACTGG | 6 cut(s) | 54, 981, 1591, 1699, 3013, 3077 |
| Bse21I | CCTNAGG | 1 cut(s) | 1891 |
| Bse3DI | GCAATG | 1 cut(s) | 2760 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1179 |
| BseAI | TCCGGA | 1 cut(s) | 2263 |
| BseBI | CCWGG | 7 cut(s) | 251, 430, 450, 669, 2165, 2586, 2810 |
| BseJI | GATNNNNATC | 1 cut(s) | 1179 |
| BseMI | GCAATG | 1 cut(s) | 2760 |
| BseNI | ACTGG | 6 cut(s) | 54, 981, 1591, 1699, 3013, 3077 |
| BseRI | GAGGAG | 2 cut(s) | 708, 985 |
| BseSI | GKGCMC | 2 cut(s) | 2740, 3232 |
| BseX3I | CGGCCG | 2 cut(s) | 1603, 3104 |
| BseYI | CCCAGC | 1 cut(s) | 3054 |
| BsgI | GTGCAG | 3 cut(s) | 104, 1846, 3069 |
| Bsh1236I | CGCG | 1 cut(s) | 322 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1606, 3107 |
| BshFI | GGCC | 9 cut(s) | 471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106 |
| BshTI | ACCGGT | 1 cut(s) | 632 |
| BsiEI | CGRYCG | 2 cut(s) | 1606, 3107 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1272, 2071, 2461, 2740 |
| BsiHKCI | CYCGRG | 1 cut(s) | 987 |
| BsiSI | CCGG | 9 cut(s) | 233, 633, 805, 988, 1166, 1304, 1602, 2264, 2575 |
| BslFI | GGGAC | 3 cut(s) | 543, 591, 2228 |
| BsmAI | GTCTC | 5 cut(s) | 572, 967, 1222, 2546, 2629 |
| BsmBI | CGTCTC | 1 cut(s) | 2546 |
| BsmFI | GGGAC | 3 cut(s) | 543, 591, 2228 |
| BsmI | GAATGC | 1 cut(s) | 294 |
| BsnI | GGCC | 9 cut(s) | 471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106 |
| Bso31I | GGTCTC | 1 cut(s) | 572 |
| BsoBI | CYCGRG | 1 cut(s) | 987 |
| Bsp119I | TTCGAA | 1 cut(s) | 266 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1272, 1899, 2071, 2461, 2740, 3232 |
| Bsp13I | TCCGGA | 1 cut(s) | 2263 |
| Bsp1407I | TGTACA | 1 cut(s) | 332 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1434 |
| Bsp19I | CCATGG | 2 cut(s) | 562, 609 |
| BspACI | CCGC | 7 cut(s) | 322, 1606, 1838, 2251, 2789, 3107, 3225 |
| BspANI | GGCC | 9 cut(s) | 471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106 |
| BspEI | TCCGGA | 1 cut(s) | 2263 |
| BspFNI | CGCG | 1 cut(s) | 322 |
| BspHI | TCATGA | 1 cut(s) | 2437 |
| BspLI | GGNNCC | 6 cut(s) | 248, 1260, 1626, 1898, 1998, 2692 |
| BspMAI | CTGCAG | 2 cut(s) | 130, 1618 |
| BspMI | ACCTGC | 2 cut(s) | 472, 1818 |
| BspPI | GGATC | 7 cut(s) | 757, 1124, 1461, 2203, 2243, 2340, 2710 |
| BspT104I | TTCGAA | 1 cut(s) | 266 |
| BspTI | CTTAAG | 1 cut(s) | 1142 |
| BspTNI | GGTCTC | 1 cut(s) | 572 |
| BsrDI | GCAATG | 1 cut(s) | 2760 |
| BsrFI | RCCGGY | 1 cut(s) | 632 |
| BsrGI | TGTACA | 1 cut(s) | 332 |
| BsrI | ACTGG | 6 cut(s) | 54, 981, 1591, 1699, 3013, 3077 |
| BssAI | RCCGGY | 1 cut(s) | 632 |
| BssT1I | CCWWGG | 5 cut(s) | 562, 609, 1917, 2230, 2614 |
| Bst2UI | CCWGG | 7 cut(s) | 251, 430, 450, 669, 2165, 2586, 2810 |
| Bst6I | CTCTTC | 3 cut(s) | 1794, 2053, 2481 |
| BstAFI | CTTAAG | 1 cut(s) | 1142 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 863, 1055, 1282 |
| BstAUI | TGTACA | 1 cut(s) | 332 |
| BstBAI | YACGTR | 1 cut(s) | 1910 |
| BstBI | TTCGAA | 1 cut(s) | 266 |
| BstC8I | GCNNGC | 5 cut(s) | 533, 1030, 1071, 1086, 2695 |
| BstDSI | CCRYGG | 3 cut(s) | 562, 609, 1794 |
| BstFNI | CGCG | 1 cut(s) | 322 |
| BstH2I | RGCGCY | 1 cut(s) | 328 |
| BstHHI | GCGC | 1 cut(s) | 327 |
| BstMAI | GTCTC | 5 cut(s) | 572, 967, 1222, 2546, 2629 |
| BstMCI | CGRYCG | 2 cut(s) | 1606, 3107 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 386, 863, 1007, 1055, 1282, 1673, 3167 |
| BstNI | CCWGG | 7 cut(s) | 251, 430, 450, 669, 2165, 2586, 2810 |
| BstNSI | RCATGY | 2 cut(s) | 576, 1073 |
| BstSFI | CTRYAG | 3 cut(s) | 126, 816, 1614 |
| BstSLI | GKGCMC | 2 cut(s) | 2740, 3232 |
| BstUI | CGCG | 1 cut(s) | 322 |
| BstV2I | GAAGAC | 1 cut(s) | 2626 |
| BstX2I | RGATCY | 4 cut(s) | 1129, 1453, 2332, 2954 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 689 |
| BstYI | RGATCY | 4 cut(s) | 1129, 1453, 2332, 2954 |
| BstZI | CGGCCG | 2 cut(s) | 1603, 3104 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1891 |
| BsuI | GTATCC | 2 cut(s) | 2646, 2872 |
| BsuRI | GGCC | 9 cut(s) | 471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106 |
| BtgI | CCRYGG | 3 cut(s) | 562, 609, 1794 |
| BtrI | CACGTC | 1 cut(s) | 508 |
| BtsI | GCAGTG | 1 cut(s) | 861 |
| BtsIMutI | CAGTG | 5 cut(s) | 765, 861, 1541, 1822, 2047 |
| BveI | ACCTGC | 2 cut(s) | 472, 1818 |
| Cac8I | GCNNGC | 5 cut(s) | 533, 1030, 1071, 1086, 2695 |
| CaiI | CAGNNNCTG | 2 cut(s) | 219, 1637 |
| CciI | TCATGA | 1 cut(s) | 2437 |
| CfoI | GCGC | 1 cut(s) | 327 |
| Cfr10I | RCCGGY | 1 cut(s) | 632 |
| Cfr13I | GGNCC | 3 cut(s) | 1534, 1625, 2266 |
| Cfr9I | CCCGGG | 1 cut(s) | 987 |
| CspAI | ACCGGT | 1 cut(s) | 632 |
| DraIII | CACNNNGTG | 1 cut(s) | 82 |
| EaeI | YGGCCR | 5 cut(s) | 469, 978, 1020, 1603, 3104 |
| EagI | CGGCCG | 2 cut(s) | 1603, 3104 |
| Eam1104I | CTCTTC | 3 cut(s) | 1794, 2053, 2481 |
| EarI | CTCTTC | 3 cut(s) | 1794, 2053, 2481 |
| Ecl136II | GAGCTC | 1 cut(s) | 1270 |
| EclXI | CGGCCG | 2 cut(s) | 1603, 3104 |
| Eco130I | CCWWGG | 5 cut(s) | 562, 609, 1917, 2230, 2614 |
| Eco147I | AGGCCT | 1 cut(s) | 1510 |
| Eco24I | GRGCYC | 2 cut(s) | 1272, 1899 |
| Eco31I | GGTCTC | 1 cut(s) | 572 |
| Eco32I | GATATC | 1 cut(s) | 1947 |
| Eco47I | GGWCC | 3 cut(s) | 1534, 1625, 2266 |
| Eco52I | CGGCCG | 2 cut(s) | 1603, 3104 |
| Eco53kI | GAGCTC | 1 cut(s) | 1270 |
| Eco57I | CTGAAG | 1 cut(s) | 2505 |
| Eco81I | CCTNAGG | 1 cut(s) | 1891 |
| Eco88I | CYCGRG | 1 cut(s) | 987 |
| EcoICRI | GAGCTC | 1 cut(s) | 1270 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1534 |
| EcoRI | GAATTC | 1 cut(s) | 777 |
| EcoRII | CCWGG | 7 cut(s) | 249, 428, 448, 667, 2163, 2584, 2808 |
| EcoRV | GATATC | 1 cut(s) | 1947 |
| EcoT14I | CCWWGG | 5 cut(s) | 562, 609, 1917, 2230, 2614 |
| EcoT22I | ATGCAT | 3 cut(s) | 296, 578, 886 |
| EcoT38I | GRGCYC | 2 cut(s) | 1272, 1899 |
| ErhI | CCWWGG | 5 cut(s) | 562, 609, 1917, 2230, 2614 |
| Esp3I | CGTCTC | 1 cut(s) | 2546 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 766, 798 |
| FaqI | GGGAC | 3 cut(s) | 543, 591, 2228 |
| FauI | CCCGC | 1 cut(s) | 3218 |
| FbaI | TGATCA | 3 cut(s) | 141, 912, 2904 |
| FblI | GTMKAC | 1 cut(s) | 2886 |
| FriOI | GRGCYC | 2 cut(s) | 1272, 1899 |
| FspBI | CTAG | 9 cut(s) | 59, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026 |
| GlaI | GCGC | 1 cut(s) | 326 |
| GsaI | CCCAGC | 1 cut(s) | 3058 |
| GsuI | CTGGAG | 5 cut(s) | 1883, 1971, 2568, 2709, 3222 |
| HaeII | RGCGCY | 1 cut(s) | 328 |
| HaeIII | GGCC | 9 cut(s) | 471, 980, 1022, 1510, 1605, 1956, 2178, 2389, 3106 |
| HapII | CCGG | 9 cut(s) | 233, 633, 805, 988, 1166, 1304, 1602, 2264, 2575 |
| HhaI | GCGC | 1 cut(s) | 327 |
| Hin6I | GCGC | 1 cut(s) | 325 |
| HinP1I | GCGC | 1 cut(s) | 325 |
| HincII | GTYRAC | 3 cut(s) | 487, 843, 2887 |
| HindII | GTYRAC | 3 cut(s) | 487, 843, 2887 |
| HindIII | AAGCTT | 1 cut(s) | 21 |
| HinfI | GANTC | 7 cut(s) | 54, 165, 1804, 1886, 1913, 3121, 3265 |
| HpaII | CCGG | 9 cut(s) | 233, 633, 805, 988, 1166, 1304, 1602, 2264, 2575 |
| HphI | GGTGA | 6 cut(s) | 740, 1212, 1346, 2108, 2935, 3343 |
| HpyAV | CCTTC | 5 cut(s) | 1423, 1471, 2010, 2084, 3083 |
| HpyCH4IV | ACGT | 4 cut(s) | 507, 1909, 1966, 2539 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 386, 863, 1007, 1055, 1282, 1673, 3167 |
| HpySE526I | ACGT | 4 cut(s) | 507, 1909, 1966, 2539 |
| HspAI | GCGC | 1 cut(s) | 325 |
| Kpn2I | TCCGGA | 1 cut(s) | 2263 |
| Ksp22I | TGATCA | 3 cut(s) | 141, 912, 2904 |
| LmnI | GCTCC | 4 cut(s) | 695, 1902, 2518, 2690 |
| LweI | GCATC | 8 cut(s) | 844, 1045, 1576, 1673, 2262, 2340, 2533, 2849 |
| MaeI | CTAG | 9 cut(s) | 59, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026 |
| MaeII | ACGT | 4 cut(s) | 507, 1909, 1966, 2539 |
| MaeIII | GTNAC | 6 cut(s) | 175, 1582, 2296, 2744, 3004, 3331 |
| MfeI | CAATTG | 1 cut(s) | 937 |
| MflI | RGATCY | 4 cut(s) | 1129, 1453, 2332, 2954 |
| MhlI | GDGCHC | 6 cut(s) | 1272, 1899, 2071, 2461, 2740, 3232 |
| MlsI | TGGCCA | 3 cut(s) | 471, 980, 1022 |
| MluNI | TGGCCA | 3 cut(s) | 471, 980, 1022 |
| MlyI | GAGTC | 3 cut(s) | 1895, 3115, 3274 |
| MmeI | TCCRAC | 2 cut(s) | 785, 1903 |
| Mox20I | TGGCCA | 3 cut(s) | 471, 980, 1022 |
| Mph1103I | ATGCAT | 3 cut(s) | 296, 578, 886 |
| MroI | TCCGGA | 1 cut(s) | 2263 |
| MscI | TGGCCA | 3 cut(s) | 471, 980, 1022 |
| MseI | TTAA | 8 cut(s) | 258, 284, 422, 1143, 1476, 1700, 2432, 2895 |
| MslI | CAYNNNNRTG | 5 cut(s) | 575, 687, 1074, 1232, 2105 |
| Msp20I | TGGCCA | 3 cut(s) | 471, 980, 1022 |
| MspA1I | CMGCKG | 2 cut(s) | 746, 1838 |
| MspCI | CTTAAG | 1 cut(s) | 1142 |
| MspI | CCGG | 9 cut(s) | 233, 633, 805, 988, 1166, 1304, 1602, 2264, 2575 |
| MunI | CAATTG | 1 cut(s) | 937 |
| Mva1269I | GAATGC | 1 cut(s) | 294 |
| MvaI | CCWGG | 7 cut(s) | 251, 430, 450, 669, 2165, 2586, 2810 |
| MvnI | CGCG | 1 cut(s) | 322 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 386, 863, 1007, 1055, 1282, 1673, 3167 |
| NciI | CCSGG | 5 cut(s) | 233, 988, 989, 1304, 1602 |
| NcoI | CCATGG | 2 cut(s) | 562, 609 |
| NlaIV | GGNNCC | 6 cut(s) | 248, 1260, 1626, 1898, 1998, 2692 |
| NmuCI | GTSAC | 1 cut(s) | 3331 |
| NsiI | ATGCAT | 3 cut(s) | 296, 578, 886 |
| NspI | RCATGY | 2 cut(s) | 576, 1073 |
| NspV | TTCGAA | 1 cut(s) | 266 |
| OliI | CACNNNNGTG | 1 cut(s) | 1232 |
| PaeI | GCATGC | 1 cut(s) | 1073 |
| PagI | TCATGA | 1 cut(s) | 2437 |
| PceI | AGGCCT | 1 cut(s) | 1510 |
| PctI | GAATGC | 1 cut(s) | 294 |
| PfeI | GAWTC | 4 cut(s) | 54, 165, 1804, 1913 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 97 |
| PinAI | ACCGGT | 1 cut(s) | 632 |
| PleI | GAGTC | 3 cut(s) | 1894, 3115, 3273 |
| PpsI | GAGTC | 3 cut(s) | 1894, 3115, 3273 |
| Ppu21I | YACGTR | 1 cut(s) | 1910 |
| PpuMI | RGGWCCY | 1 cut(s) | 1534 |
| PsiI | TTATAA | 2 cut(s) | 1314, 2358 |
| Psp124BI | GAGCTC | 1 cut(s) | 1272 |
| Psp5II | RGGWCCY | 1 cut(s) | 1534 |
| Psp6I | CCWGG | 7 cut(s) | 249, 428, 448, 667, 2163, 2584, 2808 |
| PspFI | CCCAGC | 1 cut(s) | 3054 |
| PspGI | CCWGG | 7 cut(s) | 249, 428, 448, 667, 2163, 2584, 2808 |
| PspN4I | GGNNCC | 6 cut(s) | 248, 1260, 1626, 1898, 1998, 2692 |
| PspPI | GGNCC | 3 cut(s) | 1534, 1625, 2266 |
| PspPPI | RGGWCCY | 1 cut(s) | 1534 |
| PstI | CTGCAG | 2 cut(s) | 130, 1618 |
| PstNI | CAGNNNCTG | 2 cut(s) | 219, 1637 |
| PsuI | RGATCY | 4 cut(s) | 1129, 1453, 2332, 2954 |
| PvuII | CAGCTG | 1 cut(s) | 746 |
| RseI | CAYNNNNRTG | 5 cut(s) | 575, 687, 1074, 1232, 2105 |
| SacI | GAGCTC | 1 cut(s) | 1272 |
| SalI | GTCGAC | 1 cut(s) | 2885 |
| SaqAI | TTAA | 8 cut(s) | 258, 284, 422, 1143, 1476, 1700, 2432, 2895 |
| Sau96I | GGNCC | 3 cut(s) | 1534, 1625, 2266 |
| ScaI | AGTACT | 2 cut(s) | 954, 2160 |
| SchI | GAGTC | 3 cut(s) | 1895, 3115, 3274 |
| SduI | GDGCHC | 6 cut(s) | 1272, 1899, 2071, 2461, 2740, 3232 |
| SfaNI | GCATC | 8 cut(s) | 844, 1045, 1576, 1673, 2262, 2340, 2533, 2849 |
| SfcI | CTRYAG | 3 cut(s) | 126, 816, 1614 |
| SfuI | TTCGAA | 1 cut(s) | 266 |
| SinI | GGWCC | 3 cut(s) | 1534, 1625, 2266 |
| SmaI | CCCGGG | 1 cut(s) | 989 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 575, 687, 1074, 1232, 2105 |
| SmlI | CTYRAG | 3 cut(s) | 1125, 1142, 2224 |
| SmoI | CTYRAG | 3 cut(s) | 1125, 1142, 2224 |
| SphI | GCATGC | 1 cut(s) | 1073 |
| SseBI | AGGCCT | 1 cut(s) | 1510 |
| SsiI | CCGC | 7 cut(s) | 322, 1606, 1838, 2251, 2789, 3107, 3225 |
| SspI | AATATT | 3 cut(s) | 877, 2825, 3033 |
| SspMI | CTAG | 9 cut(s) | 59, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026 |
| SstI | GAGCTC | 1 cut(s) | 1272 |
| StuI | AGGCCT | 1 cut(s) | 1510 |
| StyI | CCWWGG | 5 cut(s) | 562, 609, 1917, 2230, 2614 |
| TaiI | ACGT | 4 cut(s) | 510, 1912, 1969, 2542 |
| TaqI | TCGA | 4 cut(s) | 266, 1398, 1884, 2886 |
| TatI | WGTACW | 5 cut(s) | 46, 332, 952, 2158, 2997 |
| TauI | GCSGC | 4 cut(s) | 325, 1608, 2792, 3109 |
| TfiI | GAWTC | 4 cut(s) | 54, 165, 1804, 1913 |
| Tru1I | TTAA | 8 cut(s) | 258, 284, 422, 1143, 1476, 1700, 2432, 2895 |
| Tru9I | TTAA | 8 cut(s) | 258, 284, 422, 1143, 1476, 1700, 2432, 2895 |
| TscAI | CASTG | 5 cut(s) | 772, 868, 1548, 1822, 2047 |
| TseFI | GTSAC | 1 cut(s) | 3331 |
| Tsp45I | GTSAC | 1 cut(s) | 3331 |
| TspGWI | ACGGA | 1 cut(s) | 1516 |
| TspMI | CCCGGG | 1 cut(s) | 987 |
| TspRI | CASTG | 5 cut(s) | 772, 868, 1548, 1822, 2047 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 97 |
| Vha464I | CTTAAG | 1 cut(s) | 1142 |
| VneI | GTGCAC | 1 cut(s) | 2736 |
| VpaK11BI | GGWCC | 3 cut(s) | 1534, 1625, 2266 |
| XapI | RAATTY | 2 cut(s) | 777, 2428 |
| XceI | RCATGY | 2 cut(s) | 576, 1073 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 665, 2032 |
| XmaI | CCCGGG | 1 cut(s) | 987 |
| XmaJI | CCTAGG | 1 cut(s) | 2614 |
| XmiI | GTMKAC | 1 cut(s) | 2886 |
| XspI | CTAG | 9 cut(s) | 59, 963, 1263, 1664, 1865, 2124, 2615, 2958, 3026 |
| ZrmI | AGTACT | 2 cut(s) | 954, 2160 |
| Zsp2I | ATGCAT | 3 cut(s) | 296, 578, 886 |