AT4G02160

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016621
Physical Location & Seq
Reverse (-)
954968 .. 955734
767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02160.1

Sequence Viewer

Length: 552 bp
ATGGAAATTCAAAATCAGATTAATGGTGGCCAAGAAGAGATCAAGAATATGAAGAAGAAGAAACGATCACGTGGTTTTCACGTGATCGGTGTCGTTTTATACATGCTTCGGCGTCGGAGGAGGAGCAAGCCGCTTAATAACGGGTTTTGGCGGCGAGTTGTCGAGTCCTTTGGGCAGTTGAAAAACGACAATGTTACGGTACTTCCATCGTCGTCTAATATTACGATACTACCACCATCATCTTCTCCGGTGACGGATGAAGTTCCGGCGAGTAGTGACGATCAGGTATCGGAGATGGTTGAGGTTCTCACGGCGACGTCTAGTTCTTGCTCTTCGGGAATCTCGGGATATGGATCAGCAAAGTCGTTGCGAGATATGGATTGTCTTGATGAAGATGATGATGATGATGAAAATTATGGTAATGATGATGGAGGTGATGAGATGATTGATGCGAAAGCTGAGGAGTTTATTGTGAGATTTTATGAACAGATGAGGATGCAAAATCAGGCTTATACAGAACGTTACAAAGCTAAAGAGATGATGATGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

183

Amino Acids

20.74

Weight (kDa)

4.89

Isoelectric Point (pI)

67.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 146 - 176 1.9e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02160 AT5G61710
fragaria_vesca FvH4_5g39630
prunus_persica Prupe.8G269500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0241941
rosa_laevigata RLG00000000528
rosa_multiflora Rmu_sc0003266.1_g000012
rosa_roxburghii Rroxscaffold_3G00218460
rosa_rugosa Rorug07G0348800
rosa_samantha Rh7AG502900 Rh7BG474200 Rh7CG519700 Rh7DG488500
rosa_wichuraiana Rw7G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 320
AciI CCGC 2 cut(s) 131, 151
AclI AACGTT 1 cut(s) 520
AclWI GGATC 1 cut(s) 361
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 1 cut(s) 6
AcvI CACGTG 2 cut(s) 71, 82
AcyI GRCGYC 2 cut(s) 112, 317
AfaI GTAC 1 cut(s) 201
AgsI TTSAA 2 cut(s) 11, 181
AluBI AGCT 2 cut(s) 458, 530
AluI AGCT 2 cut(s) 458, 530
AlwI GGATC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 6
AseI ATTAAT 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 262, 446
AvaI CYCGRG 1 cut(s) 343
BalI TGGCCA 1 cut(s) 30
BbrPI CACGTG 2 cut(s) 71, 82
BbvCI CCTCAGC 1 cut(s) 459
BccI CCATC 5 cut(s) 214, 244, 289, 422, 538
BceAI ACGGC 1 cut(s) 327
BfaI CTAG 1 cut(s) 321
BisI GCNGC 2 cut(s) 131, 152
BlsI GCNGC 2 cut(s) 132, 153
BmeT110I CYCGRG 1 cut(s) 343
BmsI GCATC 2 cut(s) 439, 486
Bpu10I CCTNAGC 1 cut(s) 459
BsaAI YACGTR 2 cut(s) 71, 82
BsaBI GATNNNNATC 1 cut(s) 352
BsaHI GRCGYC 2 cut(s) 112, 317
BsaWI WCCGGW 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 352
BseGI GGATG 2 cut(s) 262, 501
BseJI GATNNNNATC 1 cut(s) 352
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 3 cut(s) 133, 136, 476
BshFI GGCC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 2 cut(s) 248, 266
BsnI GGCC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 343
Bsp143I GATC 5 cut(s) 39, 65, 84, 280, 353
BspACI CCGC 2 cut(s) 131, 151
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 451
BspPI GGATC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 337
BssMI GATC 5 cut(s) 39, 65, 84, 280, 353
BssNI GRCGYC 2 cut(s) 112, 317
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 2 cut(s) 30, 337
BstACI GRCGYC 2 cut(s) 112, 317
BstBAI YACGTR 2 cut(s) 71, 82
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 2 cut(s) 262, 501
BstKTI GATC 5 cut(s) 42, 68, 87, 283, 356
BstMBI GATC 5 cut(s) 39, 65, 84, 280, 353
BstNSI RCATGY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 2 cut(s) 262, 501
Cac8I GCNNGC 1 cut(s) 128
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 200
CviAII CATG 1 cut(s) 103
CviJI RGCY 5 cut(s) 30, 130, 458, 509, 530
CviKI_1 RGCY 5 cut(s) 30, 130, 458, 509, 530
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 459
DpnI GATC 5 cut(s) 41, 67, 86, 282, 355
DpnII GATC 5 cut(s) 39, 65, 84, 280, 353
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 30, 337
EarI CTCTTC 2 cut(s) 30, 337
Eco72I CACGTG 2 cut(s) 71, 82
Eco88I CYCGRG 1 cut(s) 343
FaeI CATG 1 cut(s) 106
FaiI YATR 8 cut(s) 50, 100, 104, 351, 377, 417, 483, 513
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 131, 152
FokI GGATG 2 cut(s) 269, 508
Fsp4HI GCNGC 2 cut(s) 131, 152
FspBI CTAG 1 cut(s) 321
GluI GCNGC 2 cut(s) 131, 152
HaeIII GGCC 1 cut(s) 30
HapII CCGG 2 cut(s) 248, 266
HgaI GACGC 1 cut(s) 101
Hin1I GRCGYC 2 cut(s) 112, 317
Hin1II CATG 1 cut(s) 106
HinfI GANTC 2 cut(s) 164, 339
HpaII CCGG 2 cut(s) 248, 266
HphI GGTGA 2 cut(s) 262, 446
Hpy188I TCNGA 3 cut(s) 18, 117, 292
Hpy188III TCNNGA 4 cut(s) 43, 336, 345, 386
Hpy99I CGWCG 3 cut(s) 117, 214, 319
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 4 cut(s) 70, 81, 317, 520
HpyCH4V TGCA 1 cut(s) 499
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 4 cut(s) 70, 81, 317, 520
Hsp92I GRCGYC 2 cut(s) 112, 317
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 5 cut(s) 39, 65, 84, 280, 353
LguI GCTCTTC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 4 cut(s) 261, 269, 279, 491
LweI GCATC 2 cut(s) 439, 486
MaeI CTAG 1 cut(s) 321
MaeII ACGT 4 cut(s) 70, 81, 317, 520
MaeIII GTNAC 4 cut(s) 193, 250, 275, 521
MalI GATC 5 cut(s) 41, 67, 86, 282, 355
MboI GATC 5 cut(s) 39, 65, 84, 280, 353
MboII GAAGA 7 cut(s) 47, 64, 67, 70, 234, 324, 404
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 2 cut(s) 6, 412
MluNI TGGCCA 1 cut(s) 30
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 6 cut(s) 111, 114, 295, 425, 454, 486
Mox20I TGGCCA 1 cut(s) 30
MscI TGGCCA 1 cut(s) 30
MseI TTAA 2 cut(s) 21, 135
Msp20I TGGCCA 1 cut(s) 30
MspI CCGG 2 cut(s) 248, 266
NdeII GATC 5 cut(s) 39, 65, 84, 280, 353
NlaIII CATG 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 250, 275
NspI RCATGY 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 339
PkrI GCNGC 2 cut(s) 132, 153
PleI GAGTC 1 cut(s) 172
PmaCI CACGTG 2 cut(s) 71, 82
PmlI CACGTG 2 cut(s) 71, 82
PpsI GAGTC 1 cut(s) 172
Ppu21I YACGTR 2 cut(s) 71, 82
PshBI ATTAAT 1 cut(s) 21
Psp1406I AACGTT 1 cut(s) 520
PspCI CACGTG 2 cut(s) 71, 82
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 21, 135
SatI GCNGC 2 cut(s) 131, 152
Sau3AI GATC 5 cut(s) 39, 65, 84, 280, 353
SchI GAGTC 1 cut(s) 173
SetI ASST 9 cut(s) 73, 84, 288, 306, 320, 436, 460, 523, 532
SfaNI GCATC 2 cut(s) 439, 486
Sse9I AATT 2 cut(s) 6, 412
SsiI CCGC 2 cut(s) 131, 151
SspI AATATT 1 cut(s) 220
SspMI CTAG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 4 cut(s) 73, 84, 320, 523
TaqI TCGA 1 cut(s) 162
TasI AATT 2 cut(s) 6, 412
TauI GCSGC 2 cut(s) 133, 154
TfiI GAWTC 1 cut(s) 339
Tru1I TTAA 2 cut(s) 21, 135
Tru9I TTAA 2 cut(s) 21, 135
TseFI GTSAC 2 cut(s) 250, 275
Tsp45I GTSAC 2 cut(s) 250, 275
TspDTI ATGAA 5 cut(s) 65, 273, 405, 423, 498
TspGWI ACGGA 1 cut(s) 269
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 1 cut(s) 6
XceI RCATGY 1 cut(s) 106
XspI CTAG 1 cut(s) 321
ZraI GACGTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.