RLG00000000528

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016621
Physical Location & Seq
Reverse (-)
1659879 .. 1660511
633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000528

Sequence Viewer

Length: 633 bp
ATGGAAAACCAATCTCAGGCAGACAACAAGCAGCTGGTGATTGCCATCCCGGCCGACCACACCAACCTAGCCACTGATCACCACGATGAGGATCATGAAAATGCTGCAGCCCCCGTCACACCAGTCACACAGCTAGCAGCCGCTAAAAAGAAGCGTGGAGGTAATCAAATTCTGAAGGCGGCCATGGTTCTGCTCCGAAGTCGTTCTAGAAAATCTTCCAAAGCCGCCTCCGTGGAAGGAATGACCCCCAAAAGCGCCTGGAAGCGCCTCGTGGGGTCTATGCGGCCGTTGCACCTCCAGAGCAACCATTCCTCACCTCCGCCGCCTTTATTTGAGATCGCTGCACCTTCAACTCCAACGGGGTCTGAACGATACGAAGACGTGCTCCCTCCACCCATGTCTCCTGCCCACAGCACCGGTCTCGTGTCCAGATCCTCATCCGAAGATAGCATGCAGAGCAAATACGCTTCTGCTGTCAATCTCCAAGAGCTGGACCGGAGCGAGCAGGACGAAGATAAGAACAAGGGCGAGGTTGCTAATATATATGGTGGTGACGATGAGCACATCGACGCTAAGGCCGAAGAGTTCATAGCTCAATTCTATCACCAGATGAAGCTTCAACAATCGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

211

Amino Acids

22.95

Weight (kDa)

5.84

Isoelectric Point (pI)

76.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 186 - 207 1.4e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02160 AT5G61710
fragaria_vesca FvH4_5g39630
prunus_persica Prupe.8G269500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0241941
rosa_laevigata RLG00000000528
rosa_multiflora Rmu_sc0003266.1_g000012
rosa_roxburghii Rroxscaffold_3G00218460
rosa_rugosa Rorug07G0348800
rosa_samantha Rh7AG502900 Rh7BG474200 Rh7CG519700 Rh7DG488500
rosa_wichuraiana Rw7G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 490
AciI CCGC 6 cut(s) 141, 179, 225, 283, 320, 323
AclWI GGATC 2 cut(s) 99, 426
AcoI YGGCCR 3 cut(s) 51, 180, 284
AcsI RAATTY 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 194
AfiI CCNNNNNNNGG 3 cut(s) 16, 88, 490
AgeI ACCGGT 1 cut(s) 416
AgsI TTSAA 2 cut(s) 351, 620
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 5 cut(s) 34, 133, 490, 593, 616
AluI AGCT 5 cut(s) 34, 133, 490, 593, 616
Alw21I GWGCWC 2 cut(s) 387, 564
Alw26I GTCTC 2 cut(s) 405, 425
AlwI GGATC 2 cut(s) 99, 426
AoxI GGCC 4 cut(s) 51, 180, 284, 576
ApeKI GCWGC 5 cut(s) 31, 104, 107, 137, 341
ApoI RAATTY 1 cut(s) 168
AsiGI ACCGGT 1 cut(s) 416
Asp700I GAANNNNTTC 2 cut(s) 202, 214
AspLEI GCGC 2 cut(s) 257, 267
AspS9I GGNCC 1 cut(s) 493
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 5 cut(s) 49, 71, 306, 563, 596
AsuNHI GCTAGC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 493
BauI CACGAG 2 cut(s) 269, 422
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 2 cut(s) 387, 564
BbvI GCAGC 5 cut(s) 43, 91, 119, 149, 328
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 403, 437
BciT130I CCWGG 1 cut(s) 259
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 405, 425
BfaI CTAG 3 cut(s) 68, 134, 207
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 2 cut(s) 258, 268
BglI GCCNNNNNGGC 1 cut(s) 50
Bme1390I CCNGG 2 cut(s) 50, 259
Bme18I GGWCC 1 cut(s) 493
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 493
BmrFI CCNGG 2 cut(s) 50, 259
BmtI GCTAGC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 50
BsaBI GATNNNNATC 3 cut(s) 44, 90, 436
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 183, 231
BsaWI WCCGGW 2 cut(s) 416, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 88, 490
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 1 cut(s) 122
Bse8I GATNNNNATC 3 cut(s) 44, 90, 436
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 183, 231
BseGI GGATG 2 cut(s) 45, 437
BseJI GATNNNNATC 3 cut(s) 44, 90, 436
BseLI CCNNNNNNNGG 3 cut(s) 16, 88, 490
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 122
BseX3I CGGCCG 2 cut(s) 51, 284
BseXI GCAGC 5 cut(s) 43, 91, 119, 149, 328
BsgI GTGCAG 1 cut(s) 327
Bsh1285I CGRYCG 2 cut(s) 54, 287
BshFI GGCC 4 cut(s) 53, 182, 286, 578
BshTI ACCGGT 1 cut(s) 416
BsiEI CGRYCG 2 cut(s) 54, 287
BsiHKAI GWGCWC 2 cut(s) 387, 564
BsiSI CCGG 3 cut(s) 50, 417, 496
BslI CCNNNNNNNGG 3 cut(s) 16, 88, 490
BsmAI GTCTC 2 cut(s) 405, 425
BsnI GGCC 4 cut(s) 53, 182, 286, 578
Bso31I GGTCTC 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 387, 564
Bsp143I GATC 4 cut(s) 76, 91, 336, 431
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 6 cut(s) 141, 179, 225, 283, 320, 323
BspANI GGCC 4 cut(s) 53, 182, 286, 578
BspCNI CTCAG 1 cut(s) 28
BspHI TCATGA 1 cut(s) 94
BspMAI CTGCAG 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 137
BspPI GGATC 2 cut(s) 99, 426
BspTNI GGTCTC 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 416
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 183, 231
BssMI GATC 4 cut(s) 76, 91, 336, 431
BssSI CACGAG 2 cut(s) 269, 422
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 2 cut(s) 269, 422
Bst2UI CCWGG 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 576
BstC8I GCNNGC 3 cut(s) 135, 452, 503
BstDEI CTNAG 2 cut(s) 15, 573
BstDSI CCRYGG 2 cut(s) 183, 231
BstF5I GGATG 2 cut(s) 45, 437
BstH2I RGCGCY 2 cut(s) 258, 268
BstHHI GCGC 2 cut(s) 257, 267
BstKTI GATC 4 cut(s) 79, 94, 339, 434
BstMAI GTCTC 2 cut(s) 405, 425
BstMBI GATC 4 cut(s) 76, 91, 336, 431
BstMCI CGRYCG 2 cut(s) 54, 287
BstMWI GCNNNNNNNGC 3 cut(s) 50, 289, 456
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 2 cut(s) 48, 257
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 5 cut(s) 43, 91, 119, 149, 328
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BstZI CGGCCG 2 cut(s) 51, 284
BsuRI GGCC 4 cut(s) 53, 182, 286, 578
BtgI CCRYGG 2 cut(s) 183, 231
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 45, 437
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 3 cut(s) 135, 452, 503
CciI TCATGA 1 cut(s) 94
CfoI GCGC 2 cut(s) 257, 267
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 493
CseI GACGC 1 cut(s) 578
CspAI ACCGGT 1 cut(s) 416
CviAII CATG 4 cut(s) 95, 184, 397, 451
DdeI CTNAG 2 cut(s) 15, 573
DpnI GATC 4 cut(s) 78, 93, 338, 433
DpnII GATC 4 cut(s) 76, 91, 336, 431
EaeI YGGCCR 3 cut(s) 51, 180, 284
EagI CGGCCG 2 cut(s) 51, 284
Eam1104I CTCTTC 1 cut(s) 576
EarI CTCTTC 1 cut(s) 576
EciI GGCGGA 1 cut(s) 309
EclXI CGGCCG 2 cut(s) 51, 284
Eco130I CCWWGG 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 493
Eco52I CGGCCG 2 cut(s) 51, 284
Eco57I CTGAAG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 4 cut(s) 98, 187, 400, 454
FaiI YATR 9 cut(s) 96, 185, 281, 398, 452, 542, 544, 546, 590
FatI CATG 4 cut(s) 94, 183, 396, 450
FbaI TGATCA 1 cut(s) 76
FokI GGATG 2 cut(s) 32, 424
FspBI CTAG 3 cut(s) 68, 134, 207
GlaI GCGC 2 cut(s) 256, 266
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 2 cut(s) 258, 268
HaeIII GGCC 4 cut(s) 53, 182, 286, 578
HapII CCGG 3 cut(s) 50, 417, 496
HgaI GACGC 1 cut(s) 578
HhaI GCGC 2 cut(s) 257, 267
Hin1II CATG 4 cut(s) 98, 187, 400, 454
Hin6I GCGC 2 cut(s) 255, 265
HinP1I GCGC 2 cut(s) 255, 265
HindIII AAGCTT 1 cut(s) 614
HpaII CCGG 3 cut(s) 50, 417, 496
HphI GGTGA 5 cut(s) 49, 71, 306, 563, 596
Hpy188I TCNGA 5 cut(s) 174, 197, 367, 442, 628
Hpy188III TCNNGA 4 cut(s) 95, 207, 298, 429
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 3 cut(s) 169, 230, 357
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 4 cut(s) 107, 292, 344, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 289, 456
HpyF3I CTNAG 2 cut(s) 15, 573
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 4 cut(s) 98, 187, 400, 454
HspAI GCGC 2 cut(s) 255, 265
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 76, 91, 336, 431
LmnI GCTCC 3 cut(s) 198, 390, 498
Lsp1109I GCAGC 5 cut(s) 43, 91, 119, 149, 328
MaeI CTAG 3 cut(s) 68, 134, 207
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 3 cut(s) 115, 124, 551
MalI GATC 4 cut(s) 78, 93, 338, 433
MboI GATC 4 cut(s) 76, 91, 336, 431
MboII GAAGA 5 cut(s) 207, 389, 455, 524, 593
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 2 cut(s) 387, 564
MluCI AATT 2 cut(s) 168, 596
MmeI TCCRAC 1 cut(s) 380
MroXI GAANNNNTTC 2 cut(s) 202, 214
MseI TTAA 1 cut(s) 631
MslI CAYNNNNRTG 2 cut(s) 84, 99
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 3 cut(s) 50, 417, 496
MspR9I CCNGG 2 cut(s) 50, 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 3 cut(s) 50, 289, 456
NciI CCSGG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 183
NdeII GATC 4 cut(s) 76, 91, 336, 431
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 4 cut(s) 98, 187, 400, 454
NmuCI GTSAC 3 cut(s) 115, 124, 551
NspI RCATGY 1 cut(s) 454
PaeI GCATGC 1 cut(s) 454
PagI TCATGA 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PdmI GAANNNNTTC 2 cut(s) 202, 214
PflMI CCANNNNNTGG 1 cut(s) 490
PinAI ACCGGT 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspPI GGNCC 1 cut(s) 493
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 431
PvuII CAGCTG 1 cut(s) 34
RseI CAYNNNNRTG 2 cut(s) 84, 99
SaqAI TTAA 1 cut(s) 631
Sau3AI GATC 4 cut(s) 76, 91, 336, 431
Sau96I GGNCC 1 cut(s) 493
ScrFI CCNGG 2 cut(s) 50, 259
SduI GDGCHC 2 cut(s) 387, 564
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 493
SmiMI CAYNNNNRTG 2 cut(s) 84, 99
SphI GCATGC 1 cut(s) 454
Sse9I AATT 2 cut(s) 168, 596
SsiI CCGC 6 cut(s) 141, 179, 225, 283, 320, 323
SspMI CTAG 3 cut(s) 68, 134, 207
StyD4I CCNGG 2 cut(s) 48, 257
StyI CCWWGG 1 cut(s) 183
TaiI ACGT 1 cut(s) 384
TaqI TCGA 1 cut(s) 567
TasI AATT 2 cut(s) 168, 596
TauI GCSGC 5 cut(s) 143, 182, 227, 286, 325
Tru1I TTAA 1 cut(s) 631
Tru9I TTAA 1 cut(s) 631
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 3 cut(s) 115, 124, 551
TseI GCWGC 5 cut(s) 31, 104, 107, 137, 341
Tsp45I GTSAC 3 cut(s) 115, 124, 551
TspDTI ATGAA 3 cut(s) 111, 577, 626
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 1 cut(s) 168
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 454
XmnI GAANNNNTTC 2 cut(s) 202, 214
XspI CTAG 3 cut(s) 68, 134, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.