Rroxscaffold_3G00218460

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016621
Physical Location & Seq
Reverse (-)
692675 .. 693303
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00218460.1

Sequence Viewer

Length: 612 bp
ATGGAAAACCAATCTCAGGCAGACAACAAGCAGCTGGTGATTGCCATCCCGGCTGACCACACCAACCTAGCCACTGATCACCACGAGGATCATGAAAATGCAGCAGCCCCAGCCACACCAGCCACACAGCTAGCAGCCGCTAAAAAAAGCGTGGAGGCGGCCATGGTTCTGCTCCGAAGTCGTTCTAGAAAATCTTCCAAATCCGCCTCCGTGGAAGGAATGACCCCCAAAAGCCCCTGGAAGCGCCTCGTGGGGTCTATGCGGCCGTTGCACCTCCAGAGCAACCATTCCTCACCTCCGCCGCCTTTATTTGAGATCGCTGCACCTTCAACTCCAACGGGGTCTGAACGATACGAAGACGTGCTCCCTCCACCCATGTCTCCTGCTCACAGCACCGGTCTCGTGTCCAGATCCTCATCCGAAGATAGCATGCAGAGCAAATACGCTTCTGCTGTCAATCTCCAAGAGCTGGACCGGAGCGAGCAGGACGAAGATAAGAACAAGGGCGAGGTTGCTAATATATATGGTGGTGACGATGAGCACATCGACGCCAAGGCCGAAGAGTTCATAGCTCAATTCTATCACCAGATGAAGCTTCAACAATCGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

203

Amino Acids

22.14

Weight (kDa)

5.45

Isoelectric Point (pI)

80.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 179 - 200 1.4e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02160 AT5G61710
fragaria_vesca FvH4_5g39630
prunus_persica Prupe.8G269500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0241941
rosa_laevigata RLG00000000528
rosa_multiflora Rmu_sc0003266.1_g000012
rosa_roxburghii Rroxscaffold_3G00218460
rosa_rugosa Rorug07G0348800
rosa_samantha Rh7AG502900 Rh7BG474200 Rh7CG519700 Rh7DG488500
rosa_wichuraiana Rw7G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 469
AciI CCGC 6 cut(s) 138, 158, 204, 262, 299, 302
AclWI GGATC 2 cut(s) 96, 405
AcoI YGGCCR 2 cut(s) 159, 263
AcyI GRCGYC 1 cut(s) 549
AfiI CCNNNNNNNGG 2 cut(s) 16, 469
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 330, 599
AjiI CACGTC 1 cut(s) 361
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 5 cut(s) 34, 130, 469, 572, 595
AluI AGCT 5 cut(s) 34, 130, 469, 572, 595
Alw21I GWGCWC 2 cut(s) 366, 543
Alw26I GTCTC 2 cut(s) 384, 404
AlwI GGATC 2 cut(s) 96, 405
AoxI GGCC 3 cut(s) 159, 263, 555
ApeKI GCWGC 5 cut(s) 31, 101, 104, 134, 320
AsiGI ACCGGT 1 cut(s) 395
Asp700I GAANNNNTTC 2 cut(s) 181, 193
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 472
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 5 cut(s) 49, 71, 285, 542, 575
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 472
BauI CACGAG 3 cut(s) 83, 248, 401
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 366, 543
BbvI GCAGC 5 cut(s) 43, 113, 116, 146, 307
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 238
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 384, 404
BfaI CTAG 3 cut(s) 68, 131, 186
BfoI RGCGCY 1 cut(s) 247
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 159, 263, 302, 321
BlsI GCNGC 9 cut(s) 33, 103, 106, 136, 139, 160, 264, 303, 322
Bme1390I CCNGG 2 cut(s) 50, 238
Bme18I GGWCC 1 cut(s) 472
BmgBI CACGTC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 472
BmrFI CCNGG 2 cut(s) 50, 238
BmtI GCTAGC 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 50
BsaBI GATNNNNATC 2 cut(s) 44, 415
BsaHI GRCGYC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 4 cut(s) 162, 210, 236, 552
BsaWI WCCGGW 2 cut(s) 395, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 469
Bse118I RCCGGY 1 cut(s) 395
Bse8I GATNNNNATC 2 cut(s) 44, 415
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 4 cut(s) 162, 210, 236, 552
BseGI GGATG 2 cut(s) 45, 416
BseJI GATNNNNATC 2 cut(s) 44, 415
BseLI CCNNNNNNNGG 2 cut(s) 16, 469
BseMII CTCAG 1 cut(s) 29
BseX3I CGGCCG 1 cut(s) 263
BseXI GCAGC 5 cut(s) 43, 113, 116, 146, 307
BseYI CCCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 306
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 3 cut(s) 161, 265, 557
BshTI ACCGGT 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 266
BsiHKAI GWGCWC 2 cut(s) 366, 543
BsiSI CCGG 3 cut(s) 50, 396, 475
BslI CCNNNNNNNGG 2 cut(s) 16, 469
BsmAI GTCTC 2 cut(s) 384, 404
BsnI GGCC 3 cut(s) 161, 265, 557
Bso31I GGTCTC 1 cut(s) 404
Bsp1286I GDGCHC 2 cut(s) 366, 543
Bsp143I GATC 4 cut(s) 76, 88, 315, 410
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 6 cut(s) 138, 158, 204, 262, 299, 302
BspANI GGCC 3 cut(s) 161, 265, 557
BspCNI CTCAG 1 cut(s) 28
BspHI TCATGA 1 cut(s) 91
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 2 cut(s) 96, 405
BspTNI GGTCTC 1 cut(s) 404
BsrFI RCCGGY 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 4 cut(s) 162, 210, 236, 552
BssMI GATC 4 cut(s) 76, 88, 315, 410
BssNI GRCGYC 1 cut(s) 549
BssSI CACGAG 3 cut(s) 83, 248, 401
BssT1I CCWWGG 2 cut(s) 162, 552
Bst2BI CACGAG 3 cut(s) 83, 248, 401
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 555
BstACI GRCGYC 1 cut(s) 549
BstC8I GCNNGC 3 cut(s) 132, 431, 482
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 2 cut(s) 162, 210
BstF5I GGATG 2 cut(s) 45, 416
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 4 cut(s) 79, 91, 318, 413
BstMAI GTCTC 2 cut(s) 384, 404
BstMBI GATC 4 cut(s) 76, 88, 315, 410
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 5 cut(s) 50, 110, 119, 268, 435
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 2 cut(s) 48, 236
BstV1I GCAGC 5 cut(s) 43, 113, 116, 146, 307
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BstZI CGGCCG 1 cut(s) 263
BsuRI GGCC 3 cut(s) 161, 265, 557
BtgI CCRYGG 2 cut(s) 162, 210
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 45, 416
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 3 cut(s) 132, 431, 482
CciI TCATGA 1 cut(s) 91
CfoI GCGC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 472
CseI GACGC 1 cut(s) 557
CspAI ACCGGT 1 cut(s) 395
CviAII CATG 4 cut(s) 92, 163, 376, 430
DdeI CTNAG 1 cut(s) 15
DpnI GATC 4 cut(s) 78, 90, 317, 412
DpnII GATC 4 cut(s) 76, 88, 315, 410
EaeI YGGCCR 2 cut(s) 159, 263
EagI CGGCCG 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
EciI GGCGGA 2 cut(s) 193, 288
EclXI CGGCCG 1 cut(s) 263
Eco130I CCWWGG 2 cut(s) 162, 552
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 472
Eco52I CGGCCG 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 2 cut(s) 162, 552
ErhI CCWWGG 2 cut(s) 162, 552
FaeI CATG 4 cut(s) 95, 166, 379, 433
FaiI YATR 9 cut(s) 93, 164, 260, 377, 431, 521, 523, 525, 569
FatI CATG 4 cut(s) 91, 162, 375, 429
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 159, 263, 302, 321
FokI GGATG 2 cut(s) 32, 403
Fsp4HI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 159, 263, 302, 321
FspBI CTAG 3 cut(s) 68, 131, 186
GlaI GCGC 1 cut(s) 245
GluI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 159, 263, 302, 321
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 3 cut(s) 161, 265, 557
HapII CCGG 3 cut(s) 50, 396, 475
HgaI GACGC 1 cut(s) 557
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 4 cut(s) 95, 166, 379, 433
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 593
HpaII CCGG 3 cut(s) 50, 396, 475
HphI GGTGA 5 cut(s) 49, 71, 285, 542, 575
Hpy188I TCNGA 4 cut(s) 176, 346, 421, 607
Hpy188III TCNNGA 4 cut(s) 92, 186, 277, 408
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 2 cut(s) 209, 336
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 4 cut(s) 101, 271, 323, 433
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 110, 119, 268, 435
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 360
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 4 cut(s) 95, 166, 379, 433
HspAI GCGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 76, 88, 315, 410
LmnI GCTCC 3 cut(s) 177, 369, 477
Lsp1109I GCAGC 5 cut(s) 43, 113, 116, 146, 307
MaeI CTAG 3 cut(s) 68, 131, 186
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 530
MalI GATC 4 cut(s) 78, 90, 317, 412
MboI GATC 4 cut(s) 76, 88, 315, 410
MboII GAAGA 5 cut(s) 186, 368, 434, 503, 572
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 2 cut(s) 366, 543
MluCI AATT 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 359
MroXI GAANNNNTTC 2 cut(s) 181, 193
MseI TTAA 1 cut(s) 610
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 3 cut(s) 50, 396, 475
MspR9I CCNGG 2 cut(s) 50, 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 5 cut(s) 50, 110, 119, 268, 435
NciI CCSGG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 162
NdeII GATC 4 cut(s) 76, 88, 315, 410
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 4 cut(s) 95, 166, 379, 433
NmuCI GTSAC 1 cut(s) 530
NspI RCATGY 1 cut(s) 433
PaeI GCATGC 1 cut(s) 433
PagI TCATGA 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PdmI GAANNNNTTC 2 cut(s) 181, 193
PflMI CCANNNNNTGG 1 cut(s) 469
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 9 cut(s) 33, 103, 106, 136, 139, 160, 264, 303, 322
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 236
PspPI GGNCC 1 cut(s) 472
PsuI RGATCY 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 610
SatI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 159, 263, 302, 321
Sau3AI GATC 4 cut(s) 76, 88, 315, 410
Sau96I GGNCC 1 cut(s) 472
ScrFI CCNGG 2 cut(s) 50, 238
SduI GDGCHC 2 cut(s) 366, 543
SinI GGWCC 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 96
SphI GCATGC 1 cut(s) 433
Sse9I AATT 1 cut(s) 575
SsiI CCGC 6 cut(s) 138, 158, 204, 262, 299, 302
SspMI CTAG 3 cut(s) 68, 131, 186
StyD4I CCNGG 2 cut(s) 48, 236
StyI CCWWGG 2 cut(s) 162, 552
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 546
TasI AATT 1 cut(s) 575
TauI GCSGC 4 cut(s) 140, 161, 265, 304
Tru1I TTAA 1 cut(s) 610
Tru9I TTAA 1 cut(s) 610
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 5 cut(s) 31, 101, 104, 134, 320
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 3 cut(s) 108, 556, 605
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 472
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 433
XmnI GAANNNNTTC 2 cut(s) 181, 193
XspI CTAG 3 cut(s) 68, 131, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.