FvH4_5g39630

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016621
Physical Location & Seq
Forward (+)
29225359 .. 29227070
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39630.t1

Sequence Viewer

Length: 654 bp
ATGGCTCAGGTAGACAACAAGCAGCTGGTGATCGCTATCCCAGCCAACCACACCAATCAAGCCACTGATCACCGCGGGGATCATGAAAATGAAGCAGCCCCGCTCACTCCGGGAACACCAGGCACACCGGCCATACCAGGCACAATAGAAGCCGCTAAAAAGAAGCGTGGAGGTAATCAAATTCTTCAGGCGGCCATGTTTCTGCTCCGACGTCGTCCCAGCAAAAAGAATCTCAAAGCCCCCTCCGTGGAAAGAGTCGCTTCCAAAAACGCATGGAAGCGCCTCGTGGGGTCCATGAGGCCGTTGCACCTCCAGGACAACCCTTCCTCGCCCCGCTCGCCGCCTGTCTTTGAGATCGCTGCACCTTCTACTCCAACGGGGTCTGAAGCTGGATACGAAGACGTGCTCCCTCCACCCATGTCTCCGGCCGACGCCACCAATTTCATGTCTAGATCCTCATCCGAAGATAGCATGCAGAGCCGATACGCTTCTGCAGTCAATCTACAAGAGCTGGATCGGAGCGAGCAGGACGATGATAAGAGCAAGGACAAGGGTACTGATGTATATGATGGTGAGGATGAGCATATCGACGCCAAGGCCGAGGAGTTCATAGCTCAATTCTATCACCAGATGAAACTTCAACCATTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

218

Amino Acids

23.77

Weight (kDa)

5.71

Isoelectric Point (pI)

73.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 193 - 214 8.9e-10 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02160 AT5G61710
fragaria_vesca FvH4_5g39630
prunus_persica Prupe.8G269500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0241941
rosa_laevigata RLG00000000528
rosa_multiflora Rmu_sc0003266.1_g000012
rosa_roxburghii Rroxscaffold_3G00218460
rosa_rugosa Rorug07G0348800
rosa_samantha Rh7AG502900 Rh7BG474200 Rh7CG519700 Rh7DG488500
rosa_wichuraiana Rw7G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 214
AccBSI CCGCTC 2 cut(s) 103, 336
AccI GTMKAC 1 cut(s) 12
AccII CGCG 1 cut(s) 75
AciI CCGC 7 cut(s) 73, 75, 101, 153, 191, 334, 341
AclWI GGATC 3 cut(s) 87, 447, 522
AcoI YGGCCR 3 cut(s) 129, 192, 426
AcsI RAATTY 1 cut(s) 180
AcuI CTGAAG 2 cut(s) 170, 405
AcyI GRCGYC 3 cut(s) 211, 432, 591
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 641
AjiI CACGTC 1 cut(s) 403
AjnI CCWGG 3 cut(s) 118, 136, 312
AluBI AGCT 4 cut(s) 25, 389, 511, 614
AluI AGCT 4 cut(s) 25, 389, 511, 614
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 3 cut(s) 87, 447, 522
AoxI GGCC 5 cut(s) 129, 192, 299, 426, 597
ApeKI GCWGC 3 cut(s) 22, 95, 359
ApoI RAATTY 1 cut(s) 180
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 4 cut(s) 40, 62, 584, 617
AvaII GGWCC 1 cut(s) 291
BaeI ACNNNNGTAYC 2 cut(s) 546, 579
BauI CACGAG 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 3 cut(s) 34, 107, 346
BccI CCATC 1 cut(s) 563
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 3 cut(s) 120, 138, 314
BciVI GTATCC 1 cut(s) 386
BclI TGATCA 1 cut(s) 67
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 283
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 6 cut(s) 23, 96, 153, 192, 341, 360
BlsI GCNGC 6 cut(s) 24, 97, 154, 193, 342, 361
Bme1390I CCNGG 4 cut(s) 111, 120, 138, 314
Bme18I GGWCC 1 cut(s) 291
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 4 cut(s) 111, 120, 138, 314
BpiI GAAGAC 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 111
BsaBI GATNNNNATC 2 cut(s) 35, 457
BsaHI GRCGYC 3 cut(s) 211, 432, 591
BsaJI CCNNGG 4 cut(s) 73, 246, 594, 600
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 127
Bse8I GATNNNNATC 2 cut(s) 35, 457
BseBI CCWGG 3 cut(s) 120, 138, 314
BseDI CCNNGG 4 cut(s) 73, 246, 594, 600
BseGI GGATG 2 cut(s) 458, 583
BseJI GATNNNNATC 2 cut(s) 35, 457
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 617
BseX3I CGGCCG 1 cut(s) 426
BseXI GCAGC 3 cut(s) 34, 107, 346
BseYI CCCAGC 2 cut(s) 40, 218
BsgI GTGCAG 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 5 cut(s) 131, 194, 301, 428, 599
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 3 cut(s) 110, 128, 425
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 5 cut(s) 131, 194, 301, 428, 599
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 6 cut(s) 30, 67, 79, 354, 452, 514
BspACI CCGC 7 cut(s) 73, 75, 101, 153, 191, 334, 341
BspANI GGCC 5 cut(s) 131, 194, 301, 428, 599
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 496
BspPI GGATC 3 cut(s) 87, 447, 522
BsrBI CCGCTC 2 cut(s) 103, 336
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 4 cut(s) 73, 246, 594, 600
BssMI GATC 6 cut(s) 30, 67, 79, 354, 452, 514
BssNI GRCGYC 3 cut(s) 211, 432, 591
BssSI CACGAG 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 594
Bst2BI CACGAG 1 cut(s) 284
Bst2UI CCWGG 3 cut(s) 120, 138, 314
BstACI GRCGYC 3 cut(s) 211, 432, 591
BstC8I GCNNGC 3 cut(s) 338, 473, 524
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 73, 246
BstF5I GGATG 2 cut(s) 458, 583
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 6 cut(s) 33, 70, 82, 357, 455, 517
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 6 cut(s) 30, 67, 79, 354, 452, 514
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 3 cut(s) 41, 337, 477
BstNI CCWGG 3 cut(s) 120, 138, 314
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 4 cut(s) 109, 118, 136, 312
BstSFI CTRYAG 1 cut(s) 492
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 3 cut(s) 34, 107, 346
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BstZI CGGCCG 1 cut(s) 426
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 5 cut(s) 131, 194, 301, 428, 599
BtgI CCRYGG 2 cut(s) 73, 246
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 2 cut(s) 458, 583
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 338, 473, 524
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 291
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 2 cut(s) 440, 599
Csp6I GTAC 1 cut(s) 555
CviAII CATG 7 cut(s) 83, 196, 273, 295, 418, 445, 472
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 1 cut(s) 6
DpnI GATC 6 cut(s) 32, 69, 81, 356, 454, 516
DpnII GATC 6 cut(s) 30, 67, 79, 354, 452, 514
EaeI YGGCCR 3 cut(s) 129, 192, 426
EagI CGGCCG 1 cut(s) 426
EclXI CGGCCG 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 291
Eco52I CGGCCG 1 cut(s) 426
Eco57I CTGAAG 2 cut(s) 170, 405
EcoRII CCWGG 3 cut(s) 118, 136, 312
EcoT14I CCWWGG 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 7 cut(s) 86, 199, 276, 298, 421, 448, 475
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FaqI GGGAC 1 cut(s) 201
FatI CATG 7 cut(s) 82, 195, 272, 294, 417, 444, 471
FauI CCCGC 3 cut(s) 68, 108, 341
FbaI TGATCA 1 cut(s) 67
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 6 cut(s) 23, 96, 153, 192, 341, 360
FokI GGATG 2 cut(s) 445, 590
Fsp4HI GCNGC 6 cut(s) 23, 96, 153, 192, 341, 360
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 281
GluI GCNGC 6 cut(s) 23, 96, 153, 192, 341, 360
GsaI CCCAGC 2 cut(s) 44, 222
GsuI CTGGAG 1 cut(s) 296
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 5 cut(s) 131, 194, 301, 428, 599
HapII CCGG 3 cut(s) 110, 128, 425
HgaI GACGC 2 cut(s) 440, 599
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 3 cut(s) 211, 432, 591
Hin1II CATG 7 cut(s) 86, 199, 276, 298, 421, 448, 475
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 2 cut(s) 229, 255
HpaII CCGG 3 cut(s) 110, 128, 425
HphI GGTGA 4 cut(s) 40, 62, 584, 617
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 4 cut(s) 209, 385, 463, 519
Hpy188III TCNNGA 2 cut(s) 83, 450
Hpy8I GTNNAC 1 cut(s) 13
Hpy99I CGWCG 4 cut(s) 213, 216, 434, 593
HpyAV CCTTC 2 cut(s) 333, 375
HpyCH4IV ACGT 2 cut(s) 211, 402
HpyCH4V TGCA 4 cut(s) 307, 362, 475, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 337, 477
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 2 cut(s) 211, 402
Hsp92I GRCGYC 3 cut(s) 211, 432, 591
Hsp92II CATG 7 cut(s) 86, 199, 276, 298, 421, 448, 475
HspAI GCGC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 67
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 6 cut(s) 30, 67, 79, 354, 452, 514
LmnI GCTCC 3 cut(s) 210, 411, 519
Lsp1109I GCAGC 3 cut(s) 34, 107, 346
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 211, 402
MalI GATC 6 cut(s) 32, 69, 81, 356, 454, 516
MbiI CCGCTC 2 cut(s) 103, 336
MboI GATC 6 cut(s) 30, 67, 79, 354, 452, 514
MboII GAAGA 3 cut(s) 176, 410, 476
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 3 cut(s) 180, 439, 617
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 2 cut(s) 232, 398
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 2 cut(s) 25, 75
MspI CCGG 3 cut(s) 110, 128, 425
MspR9I CCNGG 4 cut(s) 111, 120, 138, 314
MvaI CCWGG 3 cut(s) 120, 138, 314
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 41, 337, 477
NciI CCSGG 1 cut(s) 111
NdeII GATC 6 cut(s) 30, 67, 79, 354, 452, 514
NlaIII CATG 7 cut(s) 86, 199, 276, 298, 421, 448, 475
NlaIV GGNNCC 1 cut(s) 292
NmeAIII GCCGAG 1 cut(s) 625
NspI RCATGY 1 cut(s) 475
PaeI GCATGC 1 cut(s) 475
PagI TCATGA 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 597
PfeI GAWTC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 213
PfoI TCCNGGA 2 cut(s) 109, 312
PkrI GCNGC 6 cut(s) 24, 97, 154, 193, 342, 361
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Psp6I CCWGG 3 cut(s) 118, 136, 312
PspFI CCCAGC 2 cut(s) 40, 218
PspGI CCWGG 3 cut(s) 118, 136, 312
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 291
PstI CTGCAG 1 cut(s) 496
PsuI RGATCY 1 cut(s) 452
PsyI GACNNNGTC 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
RseI CAYNNNNRTG 1 cut(s) 87
SacII CCGCGG 1 cut(s) 76
SatI GCNGC 6 cut(s) 23, 96, 153, 192, 341, 360
Sau3AI GATC 6 cut(s) 30, 67, 79, 354, 452, 514
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 4 cut(s) 111, 120, 138, 314
SduI GDGCHC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 492
Sfr303I CCGCGG 1 cut(s) 76
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 87
SphI GCATGC 1 cut(s) 475
Sse9I AATT 3 cut(s) 180, 439, 617
SsiI CCGC 7 cut(s) 73, 75, 101, 153, 191, 334, 341
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 4 cut(s) 109, 118, 136, 312
StyI CCWWGG 1 cut(s) 594
TaiI ACGT 2 cut(s) 214, 405
TaqI TCGA 1 cut(s) 588
TasI AATT 3 cut(s) 180, 439, 617
TauI GCSGC 3 cut(s) 155, 194, 343
TfiI GAWTC 1 cut(s) 229
TscAI CASTG 1 cut(s) 70
TseI GCWGC 3 cut(s) 22, 95, 359
TspDTI ATGAA 5 cut(s) 99, 105, 433, 598, 647
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 70
Tth111I GACNNNGTC 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 449
XceI RCATGY 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 1 cut(s) 450
ZraI GACGTC 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.