Rmu_sc0003266.1_g000012

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003266.1
OG0016621
Physical Location & Seq
Reverse (-)
59317 .. 59946
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003266.1_g000012.1.cds

Sequence Viewer

Length: 630 bp
atggaaaaccaatctcaggcagacaacaagcagctggtgattgccatcccggccgaccacaccaacctagccactgatcaccacgaggatcatgaaaatgctgcagcccccgtcacaccagccacacaactagcagccgctaaaaagaagcgtggaggtaatcaaattctgaaggcggccatggttctgctccgaagtcgttctagaaaatcttccaaagccacctccgtggaaggaatgacccccaaaagcccctggaagcgcctcgtggggtctatgcggccgttgcacctccagagcaaccattcctcacctccgccgcctttatttgagatcgctgcaccttcaactccaacggggtctgaacgatacgaagacgtgctccctccacccatgtctcctgcccacagcaccggtctcgtgtccagatcctcatccgaagatagcatgcagagcaaatacgcttctgctgtcaatctccaagagctggaccggagcgagcaggacgaagataagaacaagggcgaggttgctaacatatatggtggtgacgatgagcacatcgacgccaaggccgaagagttcatagctcaattctatcaccagatgaagcttcaacaatcggattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

209

Amino Acids

22.86

Weight (kDa)

5.98

Isoelectric Point (pI)

79.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02160 AT5G61710
fragaria_vesca FvH4_5g39630
prunus_persica Prupe.8G269500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0241941
rosa_laevigata RLG00000000528
rosa_multiflora Rmu_sc0003266.1_g000012
rosa_roxburghii Rroxscaffold_3G00218460
rosa_rugosa Rorug07G0348800
rosa_samantha Rh7AG502900 Rh7BG474200 Rh7CG519700 Rh7DG488500
rosa_wichuraiana Rw7G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 487
AciI CCGC 5 cut(s) 138, 176, 280, 317, 320
AclWI GGATC 2 cut(s) 96, 423
AcoI YGGCCR 3 cut(s) 51, 177, 281
AcsI RAATTY 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 567
AfiI CCNNNNNNNGG 2 cut(s) 16, 487
AgeI ACCGGT 1 cut(s) 413
AgsI TTSAA 2 cut(s) 348, 617
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 1 cut(s) 254
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 4 cut(s) 34, 487, 590, 613
AluI AGCT 4 cut(s) 34, 487, 590, 613
Alw21I GWGCWC 2 cut(s) 384, 561
Alw26I GTCTC 2 cut(s) 402, 422
AlwI GGATC 2 cut(s) 96, 423
AoxI GGCC 4 cut(s) 51, 177, 281, 573
ApeKI GCWGC 5 cut(s) 31, 101, 104, 134, 338
ApoI RAATTY 1 cut(s) 165
AsiGI ACCGGT 1 cut(s) 413
Asp700I GAANNNNTTC 2 cut(s) 199, 211
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 1 cut(s) 490
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 5 cut(s) 49, 71, 303, 560, 593
AvaII GGWCC 1 cut(s) 490
BauI CACGAG 3 cut(s) 83, 266, 419
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 2 cut(s) 384, 561
BbvI GCAGC 5 cut(s) 43, 88, 116, 146, 325
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 256
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 402, 422
BfaI CTAG 3 cut(s) 68, 131, 204
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 265
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 177, 281, 320, 339
BlsI GCNGC 9 cut(s) 33, 103, 106, 136, 139, 178, 282, 321, 340
Bme1390I CCNGG 2 cut(s) 50, 256
Bme18I GGWCC 1 cut(s) 490
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 490
BmrFI CCNGG 2 cut(s) 50, 256
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 50
BsaBI GATNNNNATC 2 cut(s) 44, 433
BsaHI GRCGYC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 4 cut(s) 180, 228, 254, 570
BsaWI WCCGGW 2 cut(s) 413, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 487
Bse118I RCCGGY 1 cut(s) 413
Bse8I GATNNNNATC 2 cut(s) 44, 433
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 4 cut(s) 180, 228, 254, 570
BseGI GGATG 2 cut(s) 45, 434
BseJI GATNNNNATC 2 cut(s) 44, 433
BseLI CCNNNNNNNGG 2 cut(s) 16, 487
BseMII CTCAG 1 cut(s) 29
BseX3I CGGCCG 2 cut(s) 51, 281
BseXI GCAGC 5 cut(s) 43, 88, 116, 146, 325
BsgI GTGCAG 1 cut(s) 324
Bsh1285I CGRYCG 2 cut(s) 54, 284
BshFI GGCC 4 cut(s) 53, 179, 283, 575
BshTI ACCGGT 1 cut(s) 413
BsiEI CGRYCG 2 cut(s) 54, 284
BsiHKAI GWGCWC 2 cut(s) 384, 561
BsiSI CCGG 3 cut(s) 50, 414, 493
BslI CCNNNNNNNGG 2 cut(s) 16, 487
BsmAI GTCTC 2 cut(s) 402, 422
BsnI GGCC 4 cut(s) 53, 179, 283, 575
Bso31I GGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 384, 561
Bsp143I GATC 4 cut(s) 76, 88, 333, 428
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 5 cut(s) 138, 176, 280, 317, 320
BspANI GGCC 4 cut(s) 53, 179, 283, 575
BspCNI CTCAG 1 cut(s) 28
BspHI TCATGA 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 2 cut(s) 96, 423
BspTNI GGTCTC 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 4 cut(s) 180, 228, 254, 570
BssMI GATC 4 cut(s) 76, 88, 333, 428
BssNI GRCGYC 1 cut(s) 567
BssSI CACGAG 3 cut(s) 83, 266, 419
BssT1I CCWWGG 2 cut(s) 180, 570
Bst2BI CACGAG 3 cut(s) 83, 266, 419
Bst2UI CCWGG 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 1 cut(s) 567
BstC8I GCNNGC 2 cut(s) 449, 500
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 2 cut(s) 180, 228
BstF5I GGATG 2 cut(s) 45, 434
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 4 cut(s) 79, 91, 336, 431
BstMAI GTCTC 2 cut(s) 402, 422
BstMBI GATC 4 cut(s) 76, 88, 333, 428
BstMCI CGRYCG 2 cut(s) 54, 284
BstMWI GCNNNNNNNGC 3 cut(s) 50, 286, 453
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 2 cut(s) 48, 254
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 5 cut(s) 43, 88, 116, 146, 325
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 1 cut(s) 428
BstZI CGGCCG 2 cut(s) 51, 281
BsuRI GGCC 4 cut(s) 53, 179, 283, 575
BtgI CCRYGG 2 cut(s) 180, 228
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 45, 434
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 2 cut(s) 449, 500
CciI TCATGA 1 cut(s) 91
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 490
CseI GACGC 1 cut(s) 575
CspAI ACCGGT 1 cut(s) 413
CviAII CATG 4 cut(s) 92, 181, 394, 448
DdeI CTNAG 1 cut(s) 15
DpnI GATC 4 cut(s) 78, 90, 335, 430
DpnII GATC 4 cut(s) 76, 88, 333, 428
EaeI YGGCCR 3 cut(s) 51, 177, 281
EagI CGGCCG 2 cut(s) 51, 281
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
EciI GGCGGA 1 cut(s) 306
EclXI CGGCCG 2 cut(s) 51, 281
Eco130I CCWWGG 2 cut(s) 180, 570
Eco31I GGTCTC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 490
Eco52I CGGCCG 2 cut(s) 51, 281
Eco57I CTGAAG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 180, 570
ErhI CCWWGG 2 cut(s) 180, 570
FaeI CATG 4 cut(s) 95, 184, 397, 451
FaiI YATR 9 cut(s) 93, 182, 278, 395, 449, 539, 541, 543, 587
FatI CATG 4 cut(s) 91, 180, 393, 447
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 177, 281, 320, 339
FokI GGATG 2 cut(s) 32, 421
Fsp4HI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 177, 281, 320, 339
FspBI CTAG 3 cut(s) 68, 131, 204
GlaI GCGC 1 cut(s) 263
GluI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 177, 281, 320, 339
GsuI CTGGAG 1 cut(s) 278
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 4 cut(s) 53, 179, 283, 575
HapII CCGG 3 cut(s) 50, 414, 493
HgaI GACGC 1 cut(s) 575
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 4 cut(s) 95, 184, 397, 451
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 611
HpaII CCGG 3 cut(s) 50, 414, 493
HphI GGTGA 5 cut(s) 49, 71, 303, 560, 593
Hpy188I TCNGA 5 cut(s) 171, 194, 364, 439, 625
Hpy188III TCNNGA 4 cut(s) 92, 204, 295, 426
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 3 cut(s) 166, 227, 354
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 4 cut(s) 104, 289, 341, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 286, 453
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 4 cut(s) 95, 184, 397, 451
HspAI GCGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 76, 88, 333, 428
LmnI GCTCC 3 cut(s) 195, 387, 495
Lsp1109I GCAGC 5 cut(s) 43, 88, 116, 146, 325
MaeI CTAG 3 cut(s) 68, 131, 204
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 112, 548
MalI GATC 4 cut(s) 78, 90, 335, 430
MboI GATC 4 cut(s) 76, 88, 333, 428
MboII GAAGA 5 cut(s) 204, 386, 452, 521, 590
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 384, 561
MluCI AATT 2 cut(s) 165, 593
MmeI TCCRAC 1 cut(s) 377
MroXI GAANNNNTTC 2 cut(s) 199, 211
MseI TTAA 1 cut(s) 628
MslI CAYNNNNRTG 2 cut(s) 96, 227
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 3 cut(s) 50, 414, 493
MspR9I CCNGG 2 cut(s) 50, 256
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 3 cut(s) 50, 286, 453
NciI CCSGG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 180
NdeII GATC 4 cut(s) 76, 88, 333, 428
NlaIII CATG 4 cut(s) 95, 184, 397, 451
NmuCI GTSAC 2 cut(s) 112, 548
NspI RCATGY 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 227
PaeI GCATGC 1 cut(s) 451
PagI TCATGA 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PdmI GAANNNNTTC 2 cut(s) 199, 211
PflMI CCANNNNNTGG 1 cut(s) 487
PinAI ACCGGT 1 cut(s) 413
PkrI GCNGC 9 cut(s) 33, 103, 106, 136, 139, 178, 282, 321, 340
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspPI GGNCC 1 cut(s) 490
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 34
RseI CAYNNNNRTG 2 cut(s) 96, 227
SaqAI TTAA 1 cut(s) 628
SatI GCNGC 9 cut(s) 32, 102, 105, 135, 138, 177, 281, 320, 339
Sau3AI GATC 4 cut(s) 76, 88, 333, 428
Sau96I GGNCC 1 cut(s) 490
ScrFI CCNGG 2 cut(s) 50, 256
SduI GDGCHC 2 cut(s) 384, 561
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 2 cut(s) 96, 227
SphI GCATGC 1 cut(s) 451
Sse9I AATT 2 cut(s) 165, 593
SsiI CCGC 5 cut(s) 138, 176, 280, 317, 320
SspMI CTAG 3 cut(s) 68, 131, 204
StyD4I CCNGG 2 cut(s) 48, 254
StyI CCWWGG 2 cut(s) 180, 570
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 564
TasI AATT 2 cut(s) 165, 593
TauI GCSGC 4 cut(s) 140, 179, 283, 322
Tru1I TTAA 1 cut(s) 628
Tru9I TTAA 1 cut(s) 628
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 2 cut(s) 112, 548
TseI GCWGC 5 cut(s) 31, 101, 104, 134, 338
Tsp45I GTSAC 2 cut(s) 112, 548
TspDTI ATGAA 3 cut(s) 108, 574, 623
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 1 cut(s) 165
XbaI TCTAGA 1 cut(s) 203
XceI RCATGY 1 cut(s) 451
XmnI GAANNNNTTC 2 cut(s) 199, 211
XspI CTAG 3 cut(s) 68, 131, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.