Prupe.8G269500_v2.0.a1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016621
Physical Location & Seq
Reverse (-)
22404268 .. 22404966
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G269500.1

Sequence Viewer

Length: 699 bp
ATGGAACCCAAGTCAGACAGCGTGATCATCACCATCGCCGACAGCAACAAGGGGCCGGGTCCTACTCCTACTCCTACGGATATTATTGATCATACTAGTATTAAGGAGGTGGCTCATGATCATCAATCTGATGATCATCATCATGATGTCGGCCCCACCTCACCCGCTGCACCTGCACCTAAGAAGAAGCGTGGTGGAGGAGCTATGCACATTCTCCAGTTGGCCTTCTTTATGCTCCGACGACGACATCGTTCAGATGGAAAATCCAAACCCACCTCCTTCGAAGGTCAAGCTCAAGCCGTGGCCTCAACAAAAGGCACGTGGAAGCGCCTCGTAGGGTCCATCCGCCCCTTGCACCTTCAAACCACCAGCAACCCCACGCCGCCATCCTCCGTACACAGATCTGCTCCAAGTGAGCGATACGAGGACGTGCTCCCTCCACCCATGTCTCCGGCGCGAACCGACGACCTCTCCTCCGAAGATGGCATGACTAGCCGATACACCTCTGCCGTCAATCTCCAAGAGCTAGACCGCACCGACGAAGACAACGACAACGCCGCCATCGTCAACGCCAACATTGACGCAAAGGCGGAGGAGTTTATCGCTCAATTCTATCAACAGATGAGGCTTCAGCGCTTGGATCGCTTGGATACCGTCCATCTCAGTTGCAACGACACCATTCGGAGGTCAACCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

233

Amino Acids

25.56

Weight (kDa)

6.4

Isoelectric Point (pI)

65.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02160 AT5G61710
fragaria_vesca FvH4_5g39630
prunus_persica Prupe.8G269500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0241941
rosa_laevigata RLG00000000528
rosa_multiflora Rmu_sc0003266.1_g000012
rosa_roxburghii Rroxscaffold_3G00218460
rosa_rugosa Rorug07G0348800
rosa_samantha Rh7AG502900 Rh7BG474200 Rh7CG519700 Rh7DG488500
rosa_wichuraiana Rw7G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 181
AccII CGCG 1 cut(s) 457
AciI CCGC 6 cut(s) 165, 346, 383, 532, 558, 590
AclWI GGATC 1 cut(s) 648
AcuI CTGAAG 1 cut(s) 614
AcvI CACGTG 1 cut(s) 321
AfaI GTAC 1 cut(s) 396
AfeI AGCGCT 1 cut(s) 635
AfiI CCNNNNNNNGG 1 cut(s) 684
AgsI TTSAA 1 cut(s) 362
AhlI ACTAGT 1 cut(s) 95
AjiI CACGTC 1 cut(s) 430
AluBI AGCT 3 cut(s) 203, 293, 526
AluI AGCT 3 cut(s) 203, 293, 526
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 648
Aor51HI AGCGCT 1 cut(s) 635
AoxI GGCC 4 cut(s) 53, 151, 222, 303
ApeKI GCWGC 1 cut(s) 167
AspLEI GCGC 3 cut(s) 330, 457, 636
AspS9I GGNCC 4 cut(s) 53, 59, 152, 339
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 22, 153
AsuII TTCGAA 1 cut(s) 282
AvaII GGWCC 2 cut(s) 59, 339
BbrPI CACGTG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 154
BccI CCATC 7 cut(s) 41, 251, 350, 394, 476, 569, 666
BceAI ACGGC 2 cut(s) 284, 494
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 4 cut(s) 24, 88, 118, 133
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 453
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 3 cut(s) 96, 492, 527
BfoI RGCGCY 2 cut(s) 331, 637
BfuAI ACCTGC 1 cut(s) 181
BfuI GTATCC 1 cut(s) 643
BglII AGATCT 1 cut(s) 401
BisI GCNGC 3 cut(s) 168, 383, 558
BlsI GCNGC 3 cut(s) 169, 384, 559
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 2 cut(s) 59, 339
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 4 cut(s) 53, 59, 152, 339
BmiI GGNNCC 5 cut(s) 6, 54, 60, 154, 340
BmrFI CCNGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 549
BpmI CTGGAG 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 321
BsaBI GATNNNNATC 2 cut(s) 135, 138
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 6 cut(s) 55, 85, 455, 458, 485, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 684
Bse1I ACTGG 2 cut(s) 217, 693
Bse8I GATNNNNATC 2 cut(s) 135, 138
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 342, 386
BseJI GATNNNNATC 2 cut(s) 135, 138
BseLI CCNNNNNNNGG 1 cut(s) 684
BseMII CTCAG 1 cut(s) 676
BseNI ACTGG 2 cut(s) 217, 693
BseRI GAGGAG 3 cut(s) 213, 463, 608
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 2 cut(s) 153, 159
Bsh1236I CGCG 1 cut(s) 457
BshFI GGCC 4 cut(s) 55, 153, 224, 305
BsiHKAI GWGCWC 1 cut(s) 435
BsiSI CCGG 2 cut(s) 56, 452
BslI CCNNNNNNNGG 1 cut(s) 684
BsmAI GTCTC 1 cut(s) 453
BsnI GGCC 4 cut(s) 55, 153, 224, 305
Bsp119I TTCGAA 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 6 cut(s) 24, 88, 118, 133, 401, 640
BspACI CCGC 6 cut(s) 165, 346, 383, 532, 558, 590
BspANI GGCC 4 cut(s) 55, 153, 224, 305
BspCNI CTCAG 1 cut(s) 675
BspFNI CGCG 1 cut(s) 457
BspHI TCATGA 2 cut(s) 115, 142
BspLI GGNNCC 5 cut(s) 6, 54, 60, 154, 340
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 217, 693
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 6 cut(s) 24, 88, 118, 133, 401, 640
Bst4CI ACNGT 1 cut(s) 655
BstBAI YACGTR 1 cut(s) 321
BstBI TTCGAA 1 cut(s) 282
BstDEI CTNAG 2 cut(s) 180, 662
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 342, 386
BstFNI CGCG 1 cut(s) 457
BstH2I RGCGCY 2 cut(s) 331, 637
BstHHI GCGC 3 cut(s) 330, 457, 636
BstKTI GATC 6 cut(s) 27, 91, 121, 136, 404, 643
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 6 cut(s) 24, 88, 118, 133, 401, 640
BstMWI GCNNNNNNNGC 3 cut(s) 173, 492, 642
BstSCI CCNGG 1 cut(s) 55
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 549
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 4 cut(s) 55, 153, 224, 305
BtgI CCRYGG 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 19
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 2 cut(s) 342, 386
BveI ACCTGC 1 cut(s) 181
CciI TCATGA 2 cut(s) 115, 142
CfoI GCGC 3 cut(s) 330, 457, 636
Cfr13I GGNCC 4 cut(s) 53, 59, 152, 339
CseI GACGC 1 cut(s) 590
Csp6I GTAC 1 cut(s) 395
CviAII CATG 4 cut(s) 116, 143, 445, 487
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 2 cut(s) 180, 662
DpnI GATC 6 cut(s) 26, 90, 120, 135, 403, 642
DpnII GATC 6 cut(s) 24, 88, 118, 133, 401, 640
EciI GGCGGA 2 cut(s) 335, 605
Eco47I GGWCC 2 cut(s) 59, 339
Eco47III AGCGCT 1 cut(s) 635
Eco57I CTGAAG 1 cut(s) 614
Eco72I CACGTG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 59
FaeI CATG 4 cut(s) 119, 146, 448, 490
FaiI YATR 7 cut(s) 93, 117, 144, 206, 233, 446, 488
FatI CATG 4 cut(s) 115, 142, 444, 486
FauI CCCGC 1 cut(s) 172
FbaI TGATCA 4 cut(s) 24, 88, 118, 133
Fnu4HI GCNGC 3 cut(s) 168, 383, 558
FokI GGATG 2 cut(s) 329, 373
Fsp4HI GCNGC 3 cut(s) 168, 383, 558
FspBI CTAG 3 cut(s) 96, 492, 527
GlaI GCGC 3 cut(s) 329, 456, 635
GluI GCNGC 3 cut(s) 168, 383, 558
GsuI CTGGAG 1 cut(s) 200
HaeII RGCGCY 2 cut(s) 331, 637
HaeIII GGCC 4 cut(s) 55, 153, 224, 305
HapII CCGG 2 cut(s) 56, 452
HgaI GACGC 1 cut(s) 590
HhaI GCGC 3 cut(s) 330, 457, 636
Hin1II CATG 4 cut(s) 119, 146, 448, 490
Hin6I GCGC 3 cut(s) 328, 455, 634
HinP1I GCGC 3 cut(s) 328, 455, 634
HincII GTYRAC 2 cut(s) 568, 690
HindII GTYRAC 2 cut(s) 568, 690
HpaII CCGG 2 cut(s) 56, 452
HphI GGTGA 2 cut(s) 22, 153
Hpy166II GTNNAC 3 cut(s) 397, 568, 690
Hpy188I TCNGA 6 cut(s) 16, 130, 239, 256, 478, 684
Hpy188III TCNNGA 2 cut(s) 116, 143
Hpy8I GTNNAC 3 cut(s) 397, 568, 690
Hpy99I CGWCG 4 cut(s) 243, 246, 467, 542
HpyAV CCTTC 4 cut(s) 235, 278, 289, 368
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 2 cut(s) 320, 429
HpyCH4V TGCA 5 cut(s) 170, 176, 208, 355, 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 492, 642
HpyF3I CTNAG 2 cut(s) 180, 662
HpySE526I ACGT 2 cut(s) 320, 429
Hsp92II CATG 4 cut(s) 119, 146, 448, 490
HspAI GCGC 3 cut(s) 328, 455, 634
Ksp22I TGATCA 4 cut(s) 24, 88, 118, 133
Kzo9I GATC 6 cut(s) 24, 88, 118, 133, 401, 640
LmnI GCTCC 4 cut(s) 200, 240, 412, 438
LpnPI CCDG 5 cut(s) 69, 186, 230, 382, 465
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 3 cut(s) 96, 492, 527
MaeII ACGT 2 cut(s) 320, 429
MalI GATC 6 cut(s) 26, 90, 120, 135, 403, 642
MboI GATC 6 cut(s) 24, 88, 118, 133, 401, 640
MboII GAAGA 3 cut(s) 196, 491, 554
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 1 cut(s) 435
MluCI AATT 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 262
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 2 cut(s) 141, 144
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 2 cut(s) 56, 452
MspR9I CCNGG 1 cut(s) 57
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 3 cut(s) 173, 492, 642
NciI CCSGG 1 cut(s) 57
NdeII GATC 6 cut(s) 24, 88, 118, 133, 401, 640
NlaIII CATG 4 cut(s) 119, 146, 448, 490
NlaIV GGNNCC 5 cut(s) 6, 54, 60, 154, 340
NspV TTCGAA 1 cut(s) 282
PagI TCATGA 2 cut(s) 115, 142
PaqCI CACCTGC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 3 cut(s) 247, 546, 561
PkrI GCNGC 3 cut(s) 169, 384, 559
PmaCI CACGTG 1 cut(s) 321
PmlI CACGTG 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 321
PpuMI RGGWCCY 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 59
PspCI CACGTG 1 cut(s) 321
PspN4I GGNNCC 5 cut(s) 6, 54, 60, 154, 340
PspPI GGNCC 4 cut(s) 53, 59, 152, 339
PspPPI RGGWCCY 1 cut(s) 59
PsuI RGATCY 1 cut(s) 401
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
RseI CAYNNNNRTG 2 cut(s) 141, 144
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 3 cut(s) 168, 383, 558
Sau3AI GATC 6 cut(s) 24, 88, 118, 133, 401, 640
Sau96I GGNCC 4 cut(s) 53, 59, 152, 339
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 435
SfuI TTCGAA 1 cut(s) 282
SinI GGWCC 2 cut(s) 59, 339
SmiMI CAYNNNNRTG 2 cut(s) 141, 144
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SpeI ACTAGT 1 cut(s) 95
Sse9I AATT 1 cut(s) 608
SsiI CCGC 6 cut(s) 165, 346, 383, 532, 558, 590
SspMI CTAG 3 cut(s) 96, 492, 527
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 2 cut(s) 323, 432
TaqI TCGA 1 cut(s) 282
TasI AATT 1 cut(s) 608
TauI GCSGC 2 cut(s) 385, 560
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseI GCWGC 1 cut(s) 167
TspGWI ACGGA 2 cut(s) 92, 382
VpaK11BI GGWCC 2 cut(s) 59, 339
XspI CTAG 3 cut(s) 96, 492, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.