AT5G61710

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016621
Physical Location & Seq
Forward (+)
24799836 .. 24800783
948 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61710.1

Sequence Viewer

Length: 468 bp
ATGATGAAGAAGAAGAAAAAGTCATCACGTGGGATGCACATGTTCTCCGTCGTCATGTTCATGCTCCGTCGTCGCCGGACCTCCAACACCAGGTTCTGGCGGCGTGTTGTTGAGTCCGTACGTAAAGTCCGTTCCGAAATTACGATAATGCCAGTGACGGAGATGGGAGGAGACGATGGTGATAATGAAGTTGATGATCGTTTATCGGAGACTATGGAGGTTTTCACGGCGCCTTCCTCTTCATCATCATCAGGAATCTCGGGATATGGATCAGCCATGTCCTTACGTGATTTGGACTATCCTTATGATGATGATATTGATGAATGTTATAGTGATGTCCAAGGAGGAGATGATATGATTGATGAGAAAGCTGAGGAATTCATCGTCAGATTCTATGCGCAAATGAAGATGCAAAATCAGGTTTACACTGATCGTTGCAAAGCCAAAGGGATACTGATGAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

155

Amino Acids

17.92

Weight (kDa)

5.53

Isoelectric Point (pI)

62.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 117 - 147 5.2e-09 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016621)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02160 AT5G61710
fragaria_vesca FvH4_5g39630
prunus_persica Prupe.8G269500_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0241941
rosa_laevigata RLG00000000528
rosa_multiflora Rmu_sc0003266.1_g000012
rosa_roxburghii Rroxscaffold_3G00218460
rosa_rugosa Rorug07G0348800
rosa_samantha Rh7AG502900 Rh7BG474200 Rh7CG519700 Rh7DG488500
rosa_wichuraiana Rw7G042530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 399
AccB1I GGYRCC 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 96
AciI CCGC 1 cut(s) 100
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 2 cut(s) 377, 460
AcvI CACGTG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 90, 96
AflIII ACRYGT 1 cut(s) 39
AjnI CCWGG 1 cut(s) 89
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw26I GTCTC 2 cut(s) 165, 203
AlwI GGATC 1 cut(s) 277
AlwNI CAGNNNCTG 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 259
ApoI RAATTY 2 cut(s) 377, 460
AspLEI GCGC 2 cut(s) 232, 400
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 259
AvaII GGWCC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 229
BbrPI CACGTG 1 cut(s) 29
BbvCI CCTCAGC 1 cut(s) 372
BccI CCATC 2 cut(s) 157, 170
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 91
BciVI GTATCC 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 165, 203
BfoI RGCGCY 1 cut(s) 233
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 2 cut(s) 24, 399
Bpu10I CCTNAGC 1 cut(s) 372
BsaAI YACGTR 3 cut(s) 29, 122, 287
BsaBI GATNNNNATC 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 96
Bse1I ACTGG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 268
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 90, 96
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 183, 360
BshNI GGYRCC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 1 cut(s) 76
BsiWI CGTACG 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 90, 96
BsmAI GTCTC 2 cut(s) 165, 203
BsmBI CGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 259
Bsp143I GATC 3 cut(s) 196, 269, 430
BspACI CCGC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 3 cut(s) 196, 269, 430
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 230
BstBAI YACGTR 3 cut(s) 29, 122, 287
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 232, 400
BstKTI GATC 3 cut(s) 199, 272, 433
BstMAI GTCTC 2 cut(s) 165, 203
BstMBI GATC 3 cut(s) 196, 269, 430
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 89
BstSNI TACGTA 1 cut(s) 122
BsuI GTATCC 1 cut(s) 444
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 159, 426
CaiI CAGNNNCTG 1 cut(s) 96
CfoI GCGC 2 cut(s) 232, 400
Cfr13I GGNCC 1 cut(s) 78
CsiI ACCWGGT 1 cut(s) 89
Csp6I GTAC 1 cut(s) 119
CviAII CATG 4 cut(s) 40, 55, 61, 277
CviJI RGCY 3 cut(s) 275, 371, 443
CviKI_1 RGCY 3 cut(s) 275, 371, 443
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 1 cut(s) 372
DinI GGCGCC 1 cut(s) 231
DpnI GATC 3 cut(s) 198, 271, 432
DpnII GATC 3 cut(s) 196, 269, 430
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco105I TACGTA 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 78
Eco72I CACGTG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 340
EgeI GGCGCC 1 cut(s) 231
EheI GGCGCC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 4 cut(s) 43, 58, 64, 280
FatI CATG 4 cut(s) 39, 54, 60, 276
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 101
FspI TGCGCA 1 cut(s) 399
GlaI GCGC 2 cut(s) 231, 399
GluI GCNGC 1 cut(s) 101
HaeII RGCGCY 1 cut(s) 233
HapII CCGG 1 cut(s) 76
HhaI GCGC 2 cut(s) 232, 400
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 4 cut(s) 43, 58, 64, 280
Hin6I GCGC 2 cut(s) 230, 398
HinP1I GCGC 2 cut(s) 230, 398
HinfI GANTC 3 cut(s) 113, 255, 390
HpaII CCGG 1 cut(s) 76
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 3 cut(s) 136, 208, 389
Hpy188III TCNNGA 2 cut(s) 252, 261
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 3 cut(s) 53, 72, 75
HpyAV CCTTC 1 cut(s) 243
HpyCH4IV ACGT 3 cut(s) 28, 121, 286
HpyCH4V TGCA 3 cut(s) 37, 412, 438
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 3 cut(s) 28, 121, 286
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 4 cut(s) 43, 58, 64, 280
HspAI GCGC 2 cut(s) 230, 398
KasI GGCGCC 1 cut(s) 229
Kzo9I GATC 3 cut(s) 196, 269, 430
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 7 cut(s) 76, 82, 89, 103, 165, 237, 404
LweI GCATC 2 cut(s) 24, 399
MabI ACCWGGT 1 cut(s) 89
MaeII ACGT 3 cut(s) 28, 121, 286
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 198, 271, 432
MboI GATC 3 cut(s) 196, 269, 430
MboII GAAGA 5 cut(s) 19, 22, 25, 231, 418
MluCI AATT 3 cut(s) 138, 377, 460
Mly113I GGCGCC 1 cut(s) 230
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 6 cut(s) 91, 161, 211, 247, 338, 367
MseI TTAA 1 cut(s) 466
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
NarI GGCGCC 1 cut(s) 230
NdeII GATC 3 cut(s) 196, 269, 430
NlaIII CATG 4 cut(s) 43, 58, 64, 280
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 154
NsbI TGCGCA 1 cut(s) 399
NspI RCATGY 1 cut(s) 43
PciI ACATGT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 127
PfeI GAWTC 2 cut(s) 255, 390
Pfl23II CGTACG 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 233
PmaCI CACGTG 1 cut(s) 29
PmlI CACGTG 1 cut(s) 29
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 3 cut(s) 29, 122, 287
PscI ACATGT 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 89
PspCI CACGTG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 89
PspLI CGTACG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 78
PsrI GAACNNNNNNTAC 2 cut(s) 115, 147
PstNI CAGNNNCTG 1 cut(s) 96
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 3 cut(s) 196, 269, 430
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 91
SetI ASST 8 cut(s) 31, 83, 95, 124, 222, 289, 373, 423
SexAI ACCWGGT 1 cut(s) 89
SfaNI GCATC 2 cut(s) 24, 399
SfoI GGCGCC 1 cut(s) 231
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 59
SnaBI TACGTA 1 cut(s) 122
Sse9I AATT 3 cut(s) 138, 377, 460
SsiI CCGC 1 cut(s) 100
SspDI GGCGCC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 340
TaiI ACGT 3 cut(s) 31, 124, 289
TasI AATT 3 cut(s) 138, 377, 460
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 2 cut(s) 255, 390
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TscAI CASTG 2 cut(s) 159, 433
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 7 cut(s) 20, 49, 201, 231, 336, 370, 419
TspGWI ACGGA 5 cut(s) 37, 56, 106, 119, 173
TspRI CASTG 2 cut(s) 159, 433
Van91I CCANNNNNTGG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 2 cut(s) 377, 460
XceI RCATGY 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.