AT4G02790

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015926
Physical Location & Seq
Forward (+)
1247327 .. 1249640
2314 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G02790.1

Sequence Viewer

Length: 1119 bp
ATGTTTGCTCAGTTAGCACCATCGCCGTCTCCTTCTCCGGCGAACGTTAGCCACTTCGTTCACCGTCGCACCTTCCGTCAATGTACATACGCCGTCTCCGCTTCTCTTCCCACTGCAAATTCCTCTCGTCCACCACCAATTCAGATTGTTGGAGGAAAGGATTTGAATTTGGATGTTACACGGAAAGATGATTCAATTGGGTTCAAATTAGAGGCAAATGAAGATGAAATTGATTGGATGAATCTAGAATCTGATATTCGTCTATGGACTAGAGCATTACGTCCTGTTCAGTGGTATCCAGGGCACATAATGAAAACTGAAAAGGAACTTAGGGAACAGCTTAAGTTGATGGATGTTGTGATTGAAGTCCGTGATGCTAGGATTCCTTTATCGACCACTCATCCAAAGATGGATGCGTGGCTTGGGAATAGGAAACGGATATTGGTATTAAATAGAGAAGATATGATCTCGAACGATGATCGAAATGATTGGGCGAGATACTTTGCAAAGCAAGGAATAAAGGTCATTTTCACTAATGGCAAACTTGGGATGGGAGCTATGAAGCTAGGTCGGTTAGCCAAAAGTTTAGCAGGTGACGTAAATGGGAAACGGCGAGAAAAAGGACTTCTCCCTAGATCAGTTAGAGCTGGAATAATTGGATACCCTAATGTTGGGAAATCATCTCTGATCAATCGTCTATTGAAACGAAAAATTTGCGCAGCAGCTCCAAGACCAGGTGTAACTAGAGAAATGAAATGGGTCAAGCTTGGGAAAGATCTTGATCTCTTAGATTCACCTGGAATGCTTCCTATGCGTATCGATGATCAAGCAGCTGCTATAAAGCTGGCAATTTGTGATGACATTGGAGAGAAAGCTTATGACTTCACTGATGTTGCTGGAATCCTTGTGCAGATGTTAGCACGGATTCCAGAAGTAGGCGCAAAGGCTCTTTACAACCGATACAAGATCCAGCTAGAAGGCAACTGCGGGAAAAAATTTGTGAAGACGCTTGGTCTTAATTTGTTTGGTGGAGATAGTCATCAAGCTGCATTTAGAATACTAACGGATTTTCGCAAAGGCAAATTCGGGTATGTCTCGTTGGAGAGACCTCCACTGTGA

Protein Analysis

372

Amino Acids

41.72

Weight (kDa)

9.83

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 216 - 270 4.2e-15 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02790
fragaria_vesca FvH4_2g23540
malus_domestica MD11G1284900.v1.1
prunus_persica Prupe.8G071100_v2.0.a1 Prupe.8G071100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291011
rosa_laevigata RLG00000012155
rosa_multiflora Rmu_sc0041551.1_g000001
rosa_roxburghii Rroxscaffold_7G00176460
rosa_rugosa Rorug06G0217000
rosa_samantha Rh6AG326900 Rh6BG334400 Rh6CG340600 Rh6DG327900
rosa_wichuraiana Rw6G028430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 581
Acc16I TGCGCA 1 cut(s) 718
Acc36I ACCTGC 1 cut(s) 581
AciI CCGC 2 cut(s) 99, 987
AclI AACGTT 1 cut(s) 45
AclWI GGATC 1 cut(s) 961
AcsI RAATTY 5 cut(s) 118, 166, 711, 995, 1082
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 3 cut(s) 671, 734, 935
AflII CTTAAG 1 cut(s) 341
AgsI TTSAA 5 cut(s) 166, 195, 205, 365, 703
AhdI GACNNNNNGTC 1 cut(s) 1011
AjnI CCWGG 3 cut(s) 298, 733, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
Alw26I GTCTC 4 cut(s) 33, 100, 1099, 1099
AlwI GGATC 1 cut(s) 961
ApeKI GCWGC 5 cut(s) 719, 722, 830, 833, 1046
ApoI RAATTY 5 cut(s) 118, 166, 711, 995, 1082
AspLEI GCGC 2 cut(s) 719, 941
AsuHPI GGTGA 3 cut(s) 53, 605, 786
BaeGI GKGCMC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 1010
BbvI GCAGC 5 cut(s) 731, 734, 820, 842, 1033
BccI CCATC 4 cut(s) 28, 343, 403, 544
BceAI ACGGC 3 cut(s) 10, 77, 626
BcgI CGANNNNNNTGC 2 cut(s) 696, 730
BciT130I CCWGG 3 cut(s) 300, 735, 798
BciVI GTATCC 2 cut(s) 306, 653
BclI TGATCA 2 cut(s) 687, 823
BcoDI GTCTC 4 cut(s) 33, 100, 1099, 1099
BfaI CTAG 7 cut(s) 245, 270, 378, 566, 633, 744, 974
BfrI CTTAAG 1 cut(s) 341
BfuAI ACCTGC 1 cut(s) 581
BfuI GTATCC 2 cut(s) 306, 653
BglII AGATCT 1 cut(s) 775
BisI GCNGC 5 cut(s) 720, 723, 831, 834, 1047
BlsI GCNGC 5 cut(s) 721, 724, 832, 835, 1048
Bme1390I CCNGG 3 cut(s) 300, 735, 798
BmeRI GACNNNNNGTC 1 cut(s) 1011
BmrFI CCNGG 3 cut(s) 300, 735, 798
BmsI GCATC 2 cut(s) 364, 403
BpiI GAAGAC 1 cut(s) 1010
Bsa29I ATCGAT 1 cut(s) 819
BsaBI GATNNNNATC 2 cut(s) 780, 1038
BsaI GGTCTC 1 cut(s) 1099
BsaJI CCNNGG 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 671, 734, 935
Bse8I GATNNNNATC 2 cut(s) 780, 1038
BseBI CCWGG 3 cut(s) 300, 735, 798
BseCI ATCGAT 1 cut(s) 819
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 6 cut(s) 178, 243, 358, 400, 418, 555
BseJI GATNNNNATC 2 cut(s) 780, 1038
BseLI CCNNNNNNNGG 3 cut(s) 671, 734, 935
BseMII CTCAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 5 cut(s) 731, 734, 820, 842, 1033
BsgI GTGCAG 1 cut(s) 929
BshVI ATCGAT 1 cut(s) 819
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 671, 734, 935
BsmAI GTCTC 4 cut(s) 33, 100, 1099, 1099
BsmBI CGTCTC 2 cut(s) 33, 100
BsmI GAATGC 1 cut(s) 807
Bso31I GGTCTC 1 cut(s) 1099
Bsp1286I GDGCHC 1 cut(s) 306
Bsp1407I TGTACA 1 cut(s) 83
Bsp143I GATC 8 cut(s) 465, 478, 635, 687, 775, 781, 823, 966
BspACI CCGC 2 cut(s) 99, 987
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 819
BspMI ACCTGC 1 cut(s) 581
BspPI GGATC 1 cut(s) 961
BspTI CTTAAG 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 1099
BsrGI TGTACA 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 8 cut(s) 465, 478, 635, 687, 775, 781, 823, 966
Bst2UI CCWGG 3 cut(s) 300, 735, 798
Bst4CI ACNGT 2 cut(s) 65, 1116
Bst6I CTCTTC 1 cut(s) 111
BstAFI CTTAAG 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 3 cut(s) 9, 329, 787
BstF5I GGATG 6 cut(s) 178, 243, 358, 400, 418, 555
BstHHI GCGC 2 cut(s) 719, 941
BstKTI GATC 8 cut(s) 468, 481, 638, 690, 778, 784, 826, 969
BstMAI GTCTC 4 cut(s) 33, 100, 1099, 1099
BstMBI GATC 8 cut(s) 465, 478, 635, 687, 775, 781, 823, 966
BstMWI GCNNNNNNNGC 3 cut(s) 14, 98, 811
BstNI CCWGG 3 cut(s) 300, 735, 798
BstSCI CCNGG 3 cut(s) 298, 733, 796
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 5 cut(s) 731, 734, 820, 842, 1033
BstV2I GAAGAC 1 cut(s) 1010
BstX2I RGATCY 2 cut(s) 775, 966
BstYI RGATCY 2 cut(s) 775, 966
Bsu15I ATCGAT 1 cut(s) 819
BsuI GTATCC 2 cut(s) 306, 653
BsuTUI ATCGAT 1 cut(s) 819
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 6 cut(s) 178, 243, 358, 400, 418, 555
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 4 cut(s) 111, 296, 885, 1112
BveI ACCTGC 1 cut(s) 581
Cac8I GCNNGC 1 cut(s) 846
CfoI GCGC 2 cut(s) 719, 941
ClaI ATCGAT 1 cut(s) 819
CseI GACGC 1 cut(s) 1015
CsiI ACCWGGT 1 cut(s) 733
Csp6I GTAC 1 cut(s) 84
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 3 cut(s) 9, 329, 787
DpnI GATC 8 cut(s) 467, 480, 637, 689, 777, 783, 825, 968
DpnII GATC 8 cut(s) 465, 478, 635, 687, 775, 781, 823, 966
DriI GACNNNNNGTC 1 cut(s) 1011
Eam1104I CTCTTC 1 cut(s) 111
Eam1105I GACNNNNNGTC 1 cut(s) 1011
EarI CTCTTC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 1099
EcoRII CCWGG 3 cut(s) 298, 733, 796
Esp3I CGTCTC 2 cut(s) 33, 100
FaiI YATR 9 cut(s) 88, 265, 308, 464, 560, 812, 839, 879, 1092
FauI CCCGC 1 cut(s) 980
FbaI TGATCA 2 cut(s) 687, 823
Fnu4HI GCNGC 5 cut(s) 720, 723, 831, 834, 1047
FokI GGATG 6 cut(s) 185, 250, 365, 387, 425, 562
Fsp4HI GCNGC 5 cut(s) 720, 723, 831, 834, 1047
FspBI CTAG 7 cut(s) 245, 270, 378, 566, 633, 744, 974
FspI TGCGCA 1 cut(s) 718
GlaI GCGC 2 cut(s) 718, 940
GluI GCNGC 5 cut(s) 720, 723, 831, 834, 1047
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 1015
HhaI GCGC 2 cut(s) 719, 941
Hin6I GCGC 2 cut(s) 717, 939
HinP1I GCGC 2 cut(s) 717, 939
HindIII AAGCTT 2 cut(s) 764, 873
HinfI GANTC 7 cut(s) 191, 241, 248, 382, 791, 900, 925
HpaII CCGG 1 cut(s) 38
HphI GGTGA 3 cut(s) 53, 605, 786
Hpy166II GTNNAC 2 cut(s) 61, 131
Hpy188I TCNGA 3 cut(s) 144, 253, 687
Hpy188III TCNNGA 4 cut(s) 245, 469, 779, 929
Hpy8I GTNNAC 2 cut(s) 61, 131
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 3 cut(s) 42, 82, 971
HpyCH4III ACNGT 2 cut(s) 65, 1116
HpyCH4IV ACGT 3 cut(s) 45, 280, 597
HpyCH4V TGCA 4 cut(s) 116, 506, 910, 1049
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 98, 811
HpyF3I CTNAG 3 cut(s) 9, 329, 787
HpySE526I ACGT 3 cut(s) 45, 280, 597
HspAI GCGC 2 cut(s) 717, 939
Ksp22I TGATCA 2 cut(s) 687, 823
Kzo9I GATC 8 cut(s) 465, 478, 635, 687, 775, 781, 823, 966
LmnI GCTCC 2 cut(s) 554, 730
Lsp1109I GCAGC 5 cut(s) 731, 734, 820, 842, 1033
LweI GCATC 2 cut(s) 364, 403
MabI ACCWGGT 1 cut(s) 733
MaeI CTAG 7 cut(s) 245, 270, 378, 566, 633, 744, 974
MaeII ACGT 3 cut(s) 45, 280, 597
MaeIII GTNAC 3 cut(s) 175, 593, 739
MalI GATC 8 cut(s) 467, 480, 637, 689, 777, 783, 825, 968
MboI GATC 8 cut(s) 465, 478, 635, 687, 775, 781, 823, 966
MboII GAAGA 4 cut(s) 98, 233, 470, 1015
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 2 cut(s) 775, 966
MhlI GDGCHC 1 cut(s) 306
MmeI TCCRAC 2 cut(s) 130, 1080
MnlI CCTC 4 cut(s) 133, 146, 205, 1119
MseI TTAA 3 cut(s) 342, 449, 1017
MspA1I CMGCKG 1 cut(s) 833
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 3 cut(s) 300, 735, 798
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 3 cut(s) 300, 735, 798
MwoI GCNNNNNNNGC 3 cut(s) 14, 98, 811
NdeII GATC 8 cut(s) 465, 478, 635, 687, 775, 781, 823, 966
NmuCI GTSAC 1 cut(s) 593
NsbI TGCGCA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 581
PcsI WCGNNNNNNNCGW 1 cut(s) 73
PctI GAATGC 1 cut(s) 807
PfeI GAWTC 7 cut(s) 191, 241, 248, 382, 791, 900, 925
PkrI GCNGC 5 cut(s) 721, 724, 832, 835, 1048
Psp1406I AACGTT 1 cut(s) 45
Psp6I CCWGG 3 cut(s) 298, 733, 796
PspGI CCWGG 3 cut(s) 298, 733, 796
PsuI RGATCY 2 cut(s) 775, 966
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 342, 449, 1017
SatI GCNGC 5 cut(s) 720, 723, 831, 834, 1047
Sau3AI GATC 8 cut(s) 465, 478, 635, 687, 775, 781, 823, 966
ScrFI CCNGG 3 cut(s) 300, 735, 798
SduI GDGCHC 1 cut(s) 306
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 2 cut(s) 364, 403
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SsiI CCGC 2 cut(s) 99, 987
SspMI CTAG 7 cut(s) 245, 270, 378, 566, 633, 744, 974
StyD4I CCNGG 3 cut(s) 298, 733, 796
TaaI ACNGT 2 cut(s) 65, 1116
TaiI ACGT 3 cut(s) 48, 283, 600
TaqI TCGA 4 cut(s) 392, 470, 481, 819
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 7 cut(s) 191, 241, 248, 382, 791, 900, 925
Tru1I TTAA 3 cut(s) 342, 449, 1017
Tru9I TTAA 3 cut(s) 342, 449, 1017
TscAI CASTG 4 cut(s) 118, 296, 892, 1119
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 5 cut(s) 719, 722, 830, 833, 1046
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 6 cut(s) 234, 240, 254, 326, 575, 767
TspGWI ACGGA 6 cut(s) 65, 196, 359, 451, 937, 1079
TspRI CASTG 4 cut(s) 118, 296, 892, 1119
Vha464I CTTAAG 1 cut(s) 341
XapI RAATTY 5 cut(s) 118, 166, 711, 995, 1082
XbaI TCTAGA 1 cut(s) 244
XspI CTAG 7 cut(s) 245, 270, 378, 566, 633, 744, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.